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GustavoLacerdas library [188 articles]

Neue Artikel in GustavoLacerdas Bibliothek.
  • Recent Studies of the Enzymic Synthesis of Ricinoleic Acid by Developing Castor Beans.
    Plant physiology, Vol. 67, No. 4. (April 1981), pp. 672-676.
    by Robert A A Moreau, Paul K K Stumpf
    posted to ricinus by GustavoLacerda on 2008-07-16 16:00:44 as **
  • Molecular species of PC and PE formed during castor oil biosynthesis
    Lipids, Vol. 37, No. 10. (17 October 2002), pp. 991-995.
    by Jiann-Tsyh Lin, Jennifer Chen, Pei Chen, Lucy Liao, Thomas Mckeon
    posted to ricinus by GustavoLacerda on 2008-07-16 15:21:28 as **
  • Ricinus communis Contains an Acyl-CoA Synthetase that Preferentially Activates Ricinoleate to Its CoA Thioester
    Lipids, Vol. 42, No. 10. (19 October 2007), pp. 931-938.
    by Xiaohua He, Grace Chen, Sung Kang, Thomas Mckeon
    posted to ricinus by GustavoLacerda on 2008-07-16 15:20:42 as **
  • Cloning and characterization of a cDNA encoding diacylglycerol acyltransferase from castor bean
    Lipids, Vol. 39, No. 4. (18 April 2004), pp. 311-318.
    by Xiaohua He, Charlotta Turner, Grace Chen, Jiann-Tsyh Lin, Thomas Mckeon
    posted to ricinus by GustavoLacerda on 2008-07-16 15:16:49 as **
  • Metabolism of 1-acyl-2-oleoyl-sn-glycero-3-phosphoethanolamine in castor oil biosynthesis
    Lipids, Vol. 35, No. 5. (15 May 2000), pp. 481-486.
    by Jiann-Tsyh Lin, Karen Lew, Jennifer Chen, Yugo Iwasaki, Thomas Mckeon
    posted to ricinus by GustavoLacerda on 2008-07-16 15:16:34 as **
  • Polyamines are essential for the synthesis of 2-ricinoleoyl phosphatidic acid in developing seeds of castor
    Planta, Vol. 223, No. 2. (11 January 2006), pp. 349-358.
    by Mitsuhiro Tomosugi, Ken’ichi Ichihara, Kazumi Saito
    posted to ricinus by GustavoLacerda on 2008-07-16 15:16:18 as **
  • Genome Annotation in Plants and Fungi: EuGene as a Model Platform
    Current Bioinformatics, Vol. 3, No. 2. (May 2008), pp. 87-97.
    by Foissac, Sylvain, Gouzy, Jerome, Rombauts, Stephane, Mathe, Catherine, Amselem, Joelle, Sterck, Lieven, De Peer, V Yves, Rouze, Pierre, Schiex, Thomas
    posted to genefinding by GustavoLacerda on 2008-07-14 17:01:32 as ** along with 1 person jamselem
  • Steady progress and recent breakthroughs in the accuracy of automated genome annotation
    Nat Rev Genet, Vol. 9, No. 1. (January 2008), pp. 62-73.
    by Michael R Brent
    posted to genefinding by GustavoLacerda on 2008-07-14 15:44:31 as ** along with 7 people alexl jyuh dchughes jermth wenhan renatomilani drbal
  • Heuristic approach to deriving models for gene finding.
    Nucleic Acids Res, Vol. 27, No. 19. (1 October 1999), pp. 3911-3920.
    by J Besemer, M Borodovsky
    posted to genefinding by GustavoLacerda on 2008-07-09 04:27:04 as ** along with 4 people and 2 groups alexl azazello indigoviolet wenhan MBLAB EisenLab
  • Genome assembly forensics: finding the elusive mis-assembly
    Genome Biology, Vol. 9 (14 March 2008), R55.
    by Adam M Phillippy, Michael C Schatz, Mihai Pop
    posted to assembly 454 by GustavoLacerda on 2008-07-07 13:50:55 as ** along with 3 people Neeperando fernan lp2
  • Molecular biology: Power sequencing
    Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1197-1198.
    by Brenton R Graveley
    posted to short_read_sequencing 454 by GustavoLacerda on 2008-07-01 21:34:54 as ** along with 5 people myourshaw GeeSharpMinor reyez dullhunk megraw
  • Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells
    Genome Res. (15 May 2008), gr.072769.107.
    by Dan Xie, Jun Cai, Na-Yu Chia, Huck Ng, Sheng Zhong
    posted to regulation by GustavoLacerda on 2008-06-30 22:16:07 as ** along with 4 people phoenixzxl isimpson ihpark idonaldson
  • SCUMBLE: a method for systematic and accurate detection of codon usage bias by maximum likelihood estimation
    Nucl. Acids Res., Vol. 36, No. 11. (1 June 2008), pp. 3819-3827.
    by Morten Kloster, Chao Tang
    posted to codon_usage by GustavoLacerda on 2008-06-30 16:02:37 as **
  • EagleView: a genome assembly viewer for next-generation sequencing technologies.
    Genome research (11 June 2008)
    by Weichun Huang, Gabor T T Marth
    posted to assembly 454 by GustavoLacerda on 2008-06-30 15:52:26 as ** along with 5 people balicea Neeperando APRegier fpattyn bcondon
  • Characterization of a new mitochondrial plasmid from Fusarium proliferatum
    Plasmid, Vol. 59, No. 2. (March 2008), pp. 127-133.
    by Miklós Láday, Veronika Stubnya, Zsuzsanna Hamari, László Hornok
    posted to plasmid mitochondria by GustavoLacerda on 2008-06-20 18:35:13 as **
  • The complete mitochondrial genome of the vascular wilt fungus Verticillium dahliae: a novel gene order for Verticillium and a diagnostic tool for species identification
    Current Genetics, Vol. 50, No. 2. (2006), pp. 125-136.
    by Malena Pantou, Vassili Kouvelis, Milton Typas
    posted to mitochondria by GustavoLacerda on 2008-06-20 18:12:48 as **
  • The phylogeny of squamate reptiles (lizards, snakes, and amphisbaenians) inferred from nine nuclear protein-coding genes
    Comptes Rendus Biologies, Vol. 328, No. 10-11. ( 2005), pp. 1000-1008.
    by Nicolas Vidal, Blair S Hedges
    posted to snake by GustavoLacerda on 2008-06-18 18:54:51 as **
  • Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species
    BMC Bioinformatics, Vol. 9 (13 June 2008), 278.
    by Oliver Keller, Florian Odronitz, Mario Stanke, Martin Kollmar, Stephan Waack
    posted to genomics genefinding by GustavoLacerda on 2008-06-13 21:23:47 as ** along with 1 person tharris
  • Everything you wanted to know about small RNA but were afraid to ask
    Laboratory Investigation, Vol. aop, No. current.
    by Scott D Boyd
    posted to regulation microrna by GustavoLacerda on 2008-06-13 21:20:34 as ** along with 3 people and 1 group heliopais balicea bootsy microRNA
  • Genome sequencing in microfabricated high-density picolitre reactors
    Nature (31 July 2005)
    by Marcel Margulies, Michael Egholm, William E Altman, Said Attiya, Joel S Bader, Lisa A Bemben, Jan Berka, Michael S Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B Dewell, Lei Du, Joseph M Fierro, Xavier V Gomes, Brian C Godwin, Wen He, Scott Helgesen, Chun H Ho, Gerard P Irzyk, Szilveszter C Jando, Maria LI Alenquer, Thomas P Jarvie, Kshama B Jirage, Jong-Bum Kim, James R Knight, Janna R Lanza, John H Leamon, Steven M Lefkowitz, Ming Lei, Jing Li, Kenton L Lohman, Hong Lu, Vinod B Makhijani, Keith E Mcdade, Michael P Mckenna, Eugene W Myers, Elizabeth Nickerson, John R Nobile, Ramona Plant, Bernard P Puc, Michael T Ronan, George T Roth, Gary J Sarkis, Jan F Simons, John W Simpson, Maithreyan Srinivasan, Karrie R Tartaro, Alexander Tomasz, Kari A Vogt, Greg A Volkmer, Shally H Wang, Yong Wang, Michael P Weiner, Pengguang Yu, Richard F Begley, Jonathan M Rothberg
    posted to 454 by GustavoLacerda on 2008-06-12 02:13:12 as ***** along with 23 people and 5 groups jlgreen kieran101 farhat mcox bpb carpi bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin azazello beatrizfernandez wenhan xingxu erbon tpreeprem iSEEM Green Lab Microbial-Ecology GIG gatech-compgenomics
  • The new paradigm of flow cell sequencing
    Genome Res., Vol. 18, No. 6. (1 June 2008), pp. 839-846.
    by Robert A Holt, Steven J Jones
    posted to 454 by GustavoLacerda on 2008-06-12 01:42:52 as ** along with 11 people and 1 group dchughes serdarbozdag hpaces balicea tharris reyez caseybrown kintoki lp2 stajich tmmurali Berkeley Mycology
  • Synonymous codon usage bias and the expression of human glucocerebrosidase in the methylotrophic yeast, Pichia pastoris
    Protein Expression and Purification, Vol. 26, No. 1. (October 2002), pp. 96-105.
    by Graham Sinclair, Francis Y Choy
    posted to transgene by GustavoLacerda on 2008-06-11 18:37:31 as **
  • Codon bias and heterologous protein expression
    Trends in Biotechnology, Vol. 22, No. 7. (July 2004), pp. 346-353.
    by Claes Gustafsson, Sridhar Govindarajan, Jeremy Minshull
    posted to transgene by GustavoLacerda on 2008-06-11 18:28:54 as ** along with 1 person eghorani
  • The mitochondrial genome of the Basidiomycete fungus Pleurotus ostreatus (oyster mushroom)
    FEMS Microbiology Letters, Vol. 280, No. 1. (2008), pp. 34-41.
    by Yong Wang, Fanya Zeng, Chung C Hon, Yizheng Zhang, Frederick
    posted to mitochondria by GustavoLacerda on 2008-06-10 23:29:04 as **
  • The mitochondrial genome of the thermal dimorphic fungus Penicillium marneffei is more closely related to those of molds than yeasts
    FEBS Letters, Vol. 555, No. 3. (18 December 2003), pp. 469-477.
    by Patrick C Woo, Hongjun Zhen, James J Cai, Jun Yu, Susanna K Lau, Jian Wang, Jade L Teng, Samson S Wong, Ronald H Tse, Ran Chen, Huanming Yang, Bin Liu, Kwok-Yung Yuen
    posted to mitochondria by GustavoLacerda on 2008-06-10 23:28:45 as **
  • The Agrocybe aegerita mitochondrial genome contains two inverted repeats of the nad4 gene arisen by duplication on both sides of a linear plasmid integration site
    Fungal Genetics and Biology, Vol. 45, No. 3. (March 2008), pp. 292-301.
    by C Ferandon, Chatel, B Castandet, M Castroviejo, G Barroso
    posted to mitochondria by GustavoLacerda on 2008-06-10 23:28:25 as **
  • Modeling Transcriptome Based on Transcript-Sampling Data
    PLoS ONE, Vol. 3, No. 2. (20 February 2008), e1659.
    by Jiang Zhu, Fuhong He, Jing Wang, Jun Yu
    posted to transcriptome est by GustavoLacerda on 2008-06-10 06:57:37 as **
  • An analysis of expressed sequence tags of developing castor endosperm using a full-length cDNA library
    BMC Plant Biology, Vol. 7 (31 July 2007), 42.
    by Chaofu Lu, James G Wallis, John Browse
    posted to ricinus by GustavoLacerda on 2008-06-04 14:34:41 as **
  • Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes.
    Genome Res, Vol. 18, No. 1. (January 2008), pp. 88-103.
    by S Schwartz, J Silva, D Burstein, T Pupko, E Eyras, G Ast
    posted to splicing by GustavoLacerda on 2008-05-27 17:04:47 as ** along with 3 people and 1 group dchughes stajich gjuggler Berkeley Mycology
  • ALLPATHS: De novo assembly of whole-genome shotgun microreads.
    Genome Res (13 March 2008)
    by Jonathan Butler, Iain Maccallum, Michael Kleber, Ilya A A Shlyakhter, Matthew K K Belmonte, Eric S S Lander, Chad Nusbaum, David B B Jaffe
    posted to assembly by GustavoLacerda on 2008-05-27 16:23:29 as ** along with 9 people and 1 group GeeSharpMinor iris42 tharris sharpton Neeperando jwhitney stajich azazello hpaces Berkeley Mycology
  • Velvet: Algorithms for De Novo Short Read Assembly Using De Bruijn Graphs
    Genome Res. (18 March 2008), gr.074492.107.
    by Daniel Zerbino, Ewan Birney
    posted to assembly by GustavoLacerda on 2008-05-27 16:22:52 as ** along with 6 people and 1 group iris42 tharris sharpton farhat Neeperando stajich Berkeley Mycology
  • Mireval: a web tool for simple microRNA prediction in genome sequences
    Bioinformatics, Vol. 24, No. 11. (1 June 2008), pp. 1394-1396.
    by William Ritchie, Francois-Xavier Theodule, Daniel Gautheret
    posted to regulation microrna by GustavoLacerda on 2008-05-20 19:03:26 as ** along with 1 person tharris
  • Lachesis muta (Viperidae) cDNAs reveal diverging pit viper molecules and scaffolds typical of cobra (Elapidae) venoms: implications for snake toxin repertoire evolution.
    Genetics, Vol. 173, No. 2. (June 2006), pp. 877-889.
    by IL Junqueira-de-Azevedo, AT Ching, E Carvalho, F Faria, MY Nishiyama, PL Ho, MR Diniz
    posted to snake by GustavoLacerda on 2008-05-19 13:59:54 as **
  • CompariMotif: quick and easy comparisons of sequence motifs
    Bioinformatics, Vol. 24, No. 10. (15 May 2008), pp. 1307-1309.
    by Richard J Edwards, Norman E Davey, Denis C Shields
    posted to regulation motif by GustavoLacerda on 2008-05-09 13:42:20 as ** along with 2 people jyuh maximilianh
  • EST assembly supported by a draft genome sequence: an analysis of the Chlamydomonas reinhardtii transcriptome.
    Nucleic Acids Res (1 April 2007)
    by Monica Jain, Jeff Shrager, Elizabeth H H Harris, Renee Halbrook, Arthur R R Grossman, Charles Hauser, Olivier Vallon
    posted to est2genome est assembly by GustavoLacerda on 2008-05-07 16:16:13 as ** along with 1 group Bioinformatics
  • Quality scores and SNP detection in sequencing-by-synthesis systems
    Genome Res. (22 January 2008), gr.070227.107.
    by William Brockman, Pablo Alvarez, Sarah Young, Manuel Garber, Georgia Giannoukos, William L Lee, Carsten Russ, Eric S Lander, Chad Nusbaum, David B Jaffe
    posted to assembly 454 by GustavoLacerda on 2008-05-06 18:20:19 as ** along with 5 people caseybrown dbensasson sharpton Neeperando bpb
  • Empirical comparison of ab initio repeat finding programs
    Nucl. Acids Res. (20 February 2008), gkn064.
    by Surya Saha, Susan Bridges, Zenaida V Magbanua, Daniel G Peterson
    posted to repeat by GustavoLacerda on 2008-05-05 18:18:55 as ** along with 5 people tharris Ema operon timflutre wisdom_love
  • Comparative analysis of sequence features involved in the recognition of tandem splice sites
    BMC Genomics, Vol. 9 (30 April 2008), 202.
    by Ralf Bortfeldt, Stefanie Schindler, Karol Szafranski, Stefan Schuster, Dirk Holste
    posted to splicing genefinding by GustavoLacerda on 2008-05-05 17:59:25 as **
  • What is principal component analysis?
    Nature Biotechnology, Vol. 26, No. 3., pp. 303-304.
    by Markus Ringnér
    posted to pca statistics by GustavoLacerda on 2008-04-01 22:00:09 as ** along with 53 people and 3 groups jdiezperezj mjoach ale rrbarb HugoMarcelo tharris rsantana kengg laharrin chrissp100 xingxu dekay23 rvosa i-stevenson dimka dayjm markusd ashko craigwilson06 abbie_riner quianominorleo bibay2004 jfr kristgy pavanghatty rchauhan waghsk hpaces adacier fryanpan sobolevnrm Yanno jyuh operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu FAB-lab Bioinformatics baker-group
  • RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure
    BMC Bioinformatics, Vol. 9 (31 March 2008), 176.
    by Qi Liu, Yu Yang, Chun Chen, Jiajun Bu, Yin Zhang, Xiuzi Ye
    posted to compression by GustavoLacerda on 2008-04-01 20:52:25 as **
  • Rare Structural Variants Disrupt Multiple Genes in Neurodevelopmental Pathways in Schizophrenia
    Science (27 March 2008), 1155174.
    by Tom Walsh, Jon M Mcclellan, Shane E Mccarthy, Anjene M Addington, Sarah B Pierce, Greg M Cooper, Alex S Nord, Mary Kusenda, Dheeraj Malhotra, Abishek Bhandari, Sunday M Stray, Caitlin F Rippey, Patricia Roccanova, Vlad Makarov, B Lakshmi, Robert L Findling, Linmarie Sikich, Thomas Stromberg, Barry Merriman, Nitin Gogtay, Philip Butler, Kristen Eckstrand, Laila Noory, Peter Gochman, Robert Long, Zugen Chen, Sean Davis, Carl Baker, Evan E Eichler, Paul S Meltzer, Stanley F Nelson, Andrew B Singleton, Ming K Lee, Judith L Rapoport, Mary-Claire King, Jonathan Sebat
    posted to schizophrenia by GustavoLacerda on 2008-03-28 13:35:11 as ** along with 7 people and 1 group renatomilani lisa1 djkt giovanni sekulerlab MWagner applebyb VisionLab
  • Origins and evolution of spliceosomal introns.
    Annu Rev Genet, Vol. 40 (2006), pp. 47-76.
    by F Rodríguez-Trelles, R Tarrío, FJ Ayala
    posted to intron by GustavoLacerda on 2008-03-19 18:51:25 as ** along with 1 person timflutre
  • Mitochondrial introns: a critical view
    Trends in Genetics, Vol. 23, No. 3. (March 2007), pp. 119-125.
    by Franz B Lang, Marie-Josee Laforest, Gertraud Burger
    posted to fungi genefinding intron mitochondria by GustavoLacerda on 2008-03-18 19:25:34 as **
  • prot4EST: Translating Expressed Sequence Tags from neglected genomes
    BMC Bioinformatics, Vol. 5, No. 1. (2004)
    by James Wasmuth, Mark Blaxter
    posted to est genefinding by GustavoLacerda on 2008-03-18 17:41:40 as **
  • Sequencing and analysis of the gene-rich space of cowpea
    BMC Genomics, Vol. 9 (27 February 2008), 103.
    by Michael P Timko, Paul J Rushton, Thomas W Laudeman, Marta T Bokoviec, Edmond Chipumuro, Foo Cheung, Christopher D Town, Xianfeng Chen
    posted to cowpea by GustavoLacerda on 2008-03-17 13:40:52 as **
  • Detection and validation of single feature polymorphisms in cowpea (Vigna unguiculata L. Walp) using a soybean genome array
    BMC Genomics, Vol. 9 (28 February 2008), 107.
    by Sayan Das, Prasanna R Bhat, Chinta Sudhakar, Jeffrey D Ehlers, Steve Wanamaker, Philip A Roberts, Xinping Cui, Timothy J Close
    posted to cowpea by GustavoLacerda on 2008-03-17 13:34:23 as **
  • The Genome Assembly Archive: A New Public Resource
    PLoS Biology, Vol. 2, No. 9. (1 September 2004), e285.
    by Steven L Salzberg, Deanna Church, Michael Dicuccio, Eugene Yaschenko, James Ostell
    posted to assembly by GustavoLacerda on 2008-03-14 14:22:09 as ** along with 1 person and 1 group tpreeprem gatech-compgenomics
  • SOAP: short oligonucleotide alignment program.
    Bioinformatics (28 January 2008)
    by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang
    posted to assembly by GustavoLacerda on 2008-03-14 14:21:05 as ** along with 6 people urgi caseybrown jyuh ghattem niallhaslam mdimon
  • Bioinformatics challenges of new sequencing technology
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Mihai Pop, Steven L Salzberg
    posted to 454 assembly by GustavoLacerda on 2008-03-13 20:04:53 as ** along with 9 people tharris mariakmejia jfr Neeperando jmeppley dchughes djkt niallhaslam urgi
  • A machine-learning approach to combined evidence validation of genome assemblies
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 744-750.
    by Jeong-Hyeon Choi, Sun Kim, Haixu Tang, Justen Andrews, Don G Gilbert, John K Colbourne
    posted to assembly by GustavoLacerda on 2008-03-13 19:55:37 as ** along with 4 people bertelsen ttuechler tharris Neeperando
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