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Cortels library [256 articles]

Neue Artikel in Cortels Bibliothek.
  • The entire organization of transcription units on the Bacillus subtilis genome
    BMC Genomics, Vol. 8 (28 June 2007), 197.
    by Hirokazu Kobayashi, Joe Akitomi, Nobuyuki Fujii, Kazuo Kobayashi, Md A Amin, Ken Kurokawa, Naotake Ogasawara, Shigehiko Kanaya
    posted to bacteria genome transcriptome tu by Cortel on 2007-06-30 19:32:59 as ** along with 1 person hpaces
  • Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach
    BMC Bioinformatics, Vol. 8 (28 June 2007), 225.
    by Masashi Fujita, Hisaaki Mihara, Susumu Goto, Nobuyoshi Esaki, Minoru Kanehisa
    posted to no-tag by Cortel on 2007-06-30 19:31:15 as ** along with 2 people wenhan rsandie
  • Advancing translational research with the Semantic Web
    BMC Bioinformatics, Vol. 8, No. Suppl 3. (2007)
    by Alan Ruttenberg, Tim Clark, William Bug, Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, Scott M Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn Wong, Elizabeth Wu, Davide Zaccagnini, Tonya Hongsermeier, Eric Neumann, Ivan Herman, Kei H Cheung
    posted to lsid semantic_web web_service by Cortel on 2007-05-16 19:48:46 as **** along with 13 people and 1 group dansullivanblk jyuh wnpx dullhunk hpiwowar egonw suizan jasonbobe ibuch PredictER bmaust benfqt Gaetan Evidence-based-medicine
  • The implications of alternative splicing in the ENCODE protein complement.
    Proc Natl Acad Sci U S A, Vol. 104, No. 13. (27 March 2007), pp. 5495-5500.
    by ML Tress, PL Martelli, A Frankish, GA Reeves, JJ Wesselink, C Yeats, PL Olason, M Albrecht, H Hegyi, A Giorgetti, D Raimondo, J Lagarde, RA Laskowski, G López, MI Sadowski, JD Watson, P Fariselli, I Rossi, A Nagy, W Kai, Z Størling, M Orsini, Y Assenov, H Blankenburg, C Huthmacher, F Ramírez, A Schlicker, F Denoeud, P Jones, S Kerrien, S Orchard, SE Antonarakis, A Reymond, E Birney, S Brunak, R Casadio, R Guigo, J Harrow, H Hermjakob, DT Jones, T Lengauer, C A Orengo, L Patthy, JM Thornton, A Tramontano, A Valencia
    posted to as evolution isoforms by Cortel on 2007-04-29 14:22:19 as ***** along with 4 people and 4 groups stevanspringer dchughes winterschlaefer antonkratz Bioinformatics FAB-lab G4ID Genetics-of-Gambling
  • Annotating the human proteome: beyond establishing a parts list.
    Biochim Biophys Acta, Vol. 1774, No. 2. (February 2007), pp. 175-191.
    by M Mueller, L Martens, R Apweiler
    posted to no-tag by Cortel on 2007-04-28 19:18:04 as *****
  • Alternative splicing and bioinformatic analysis of human U12-type introns
    Nucl. Acids Res., Vol. 35, No. 6. (19 March 2007), pp. 1833-1841.
    by Wen-Cheng Chang, Yung-Chia Chen, Kuo-Ming Lee, Woan-Yuh Tarn
    posted to as bioinformatics isoforms by Cortel on 2007-04-27 02:25:57 as ***
  • Switched alternative splicing of oncogene CoAA during embryonal carcinoma stem cell differentiation
    Nucl. Acids Res., Vol. 35, No. 6. (19 March 2007), pp. 1919-1932.
    by Zheqiong Yang, Yang Sui, Shiqin Xiong, Sean S Liour, Andrew C Phillips, Lan Ko
    posted to as isoforms by Cortel on 2007-04-27 02:24:41 as ***
  • notes Beyond the 3' end: experimental validation of extended transcript isoforms
    Nucl. Acids Res., Vol. 35, No. 6. (19 March 2007), pp. 1947-1957.
    by Virginie Moucadel, Fabrice Lopez, Takeshi Ara, Philippe Benech, Daniel Gautheret
    posted to 3utr as isoforms multiple_polyadenylation by Cortel on 2007-04-27 02:23:37 as ***
  • The Functions of Sco Proteins from Genome-Based Analysis
    J. Proteome Res. (15 February 2007)
    by L Banci, I Bertini, G Cavallaro, A Rosato
    posted to genome by Cortel on 2007-02-21 08:12:08 as ***
  • Bioinformatics software resources
    Brief Bioinform, Vol. 5, No. 3. (1 January 2004), pp. 300-304.
    by Don Gilbert
    posted to software resource bioinformatics b-src by Cortel on 2007-01-19 07:56:54 as ***
  • Multiple start codons and phosphorylation result in discrete Rad52 protein species
    Nucleic Acids Research, Vol. 34, No. 9. (17 May 2006), pp. 2587-2597.
    by De Mayolo, Adriana Antunez, Lisby, Michael, Erdeniz, Naz, Thybo, Tanja, Mortensen, H Uffe, Rothstein, Rodney
    posted to multiple_start_codons by Cortel on 2006-05-25 02:10:10 as ****
  • Alternative splicing--when two's a crowd.
    Cell, Vol. 123, No. 1. (7 October 2005), pp. 1-3.
    by CW Smith
    posted to as cis-element regulation review by Cortel on 2006-01-30 05:31:02 as *** along with 2 people and 1 group kaspermunch mdimon Bioinformatics
  • Mutually exclusive splicing of the insect Dscam pre-mRNA directed by competing intronic RNA secondary structures.
    Cell, Vol. 123, No. 1. (7 October 2005), pp. 65-73.
    by BR Graveley
    posted to as cis-element regulation by Cortel on 2006-01-30 05:30:14 as *** along with 1 person and 1 group kaspermunch Bioinformatics
  • Role of a locus control region in the mutually exclusive expression of human red and green cone pigment genes.
    Proc Natl Acad Sci U S A, Vol. 99, No. 2. (22 January 2002), pp. 1008-1011.
    by PM Smallwood, Y Wang, J Nathans
    posted to as cis-element regulation by Cortel on 2006-01-30 05:29:49 as ***
  • Negative feedback regulation ensures the one receptor-one olfactory neuron rule in mouse.
    Science, Vol. 302, No. 5653. (19 December 2003), pp. 2088-2094.
    by S Serizawa, K Miyamichi, H Nakatani, M Suzuki, M Saito, Y Yoshihara, H Sakano
    posted to as cis-element regulation by Cortel on 2006-01-30 05:29:23 as *** along with 1 person yama_tah
  • Allelic inactivation regulates olfactory receptor gene expression.
    Cell, Vol. 78, No. 5. (9 September 1994), pp. 823-834.
    by A Chess, I Simon, H Cedar, R Axel
    posted to as cis-element regulation by Cortel on 2006-01-30 05:28:43 as ***
  • Mutually exclusive expression of odorant receptor transgenes.
    Nat Neurosci, Vol. 3, No. 7. (July 2000), pp. 687-693.
    by S Serizawa, T Ishii, H Nakatani, A Tsuboi, F Nagawa, M Asano, K Sudo, J Sakagami, H Sakano, T Ijiri, Y Matsuda, M Suzuki, T Yamamori, Y Iwakura, H Sakano
    posted to as cis-element regulation by Cortel on 2006-01-30 05:27:54 as ***
  • Alternative splicing of the Drosophila Dscam pre-mRNA is both temporally and spatially regulated.
    Genetics, Vol. 159, No. 2. (October 2001), pp. 599-608.
    by AM Celotto, BR Graveley
    posted to as cis-element dscam regulation by Cortel on 2006-01-30 05:27:03 as *** along with 1 person and 1 group kaspermunch Bioinformatics
  • The generic genome browser: a building block for a model organism system database.
    Genome Res, Vol. 12, No. 10. (October 2002), pp. 1599-1610.
    by LD Stein, C Mungall, S Shu, M Caudy, M Mangone, A Day, E Nickerson, JE Stajich, TW Harris, A Arva, S Lewis
    posted to bioperl genome_browser gff gmod software by Cortel on 2006-01-27 07:45:20 as **** along with 7 people and 1 group tharris dullhunk farhat indigoviolet dquest stajich natstreet EisenLab
  • Non-EST based prediction of exon skipping and intron retention events using Pfam information.
    Nucleic Acids Res, Vol. 33, No. 17. (2005), pp. 5611-5621.
    by M Hiller, K Huse, M Platzer, R Backofen
    posted to as prediction by Cortel on 2006-01-13 10:29:28 as **
  • Alternative splicing regulation at tandem 3' splice sites.
    Nucleic Acids Res, Vol. 34, No. 1. (2006), pp. 23-31.
    by A Martin, MG Yael
    posted to as nagnag by Cortel on 2006-01-13 10:29:06 as ***
  • Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms
    Nature Genetics, Vol. 37, No. 6. (15 May 2005), pp. 588-589.
    by Naama M Kopelman, Doron Lancet, Itai Yanai
    posted to evolution as by Cortel on 2006-01-11 15:08:29 as ** along with 1 person imouthesmp
  • Evolution of alternative splicing after gene duplication.
    Genome Res (19 December 2005)
    by Zhixi Su, Jianmin Wang, Jun Yu, Xiaoqiu Huang, Xun Gu
    posted to as evolution by Cortel on 2006-01-11 15:07:37 as **** along with 1 person stajich
  • A haplotype map of the human genome.
    Nature, Vol. 437, No. 7063. (27 October 2005), pp. 1299-1320.
    by D Altshuler, LD Brooks, A Chakravarti, FS Collins, MJ Daly, P Donnelly, international H Consortium
    posted to hapmap snps by Cortel on 2006-01-01 13:54:03 as ** along with 11 people and 2 groups jermth eoghanharr textoris pcahan1 cgasa tabu adepace djkt vplagnol ramensky jjannink EisenLab PROPOSED_CGASA
  • Ensembl 2005.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by T Hubbard, D Andrews, M Caccamo, G Cameron, Y Chen, M Clamp, L Clarke, G Coates, T Cox, F Cunningham, V Curwen, T Cutts, T Down, R Durbin, XM Fernandez-Suarez, J Gilbert, M Hammond, J Herrero, H Hotz, K Howe, V Iyer, K Jekosch, A Kahari, A Kasprzyk, D Keefe, S Keenan, F Kokocinsci, D London, I Longden, G McVicker, C Melsopp, P Meidl, S Potter, G Proctor, M Rae, D Rios, M Schuster, S Searle, J Severin, G Slater, D Smedley, J Smith, W Spooner, A Stabenau, J Stalker, R Storey, S Trevanion, A Ureta-Vidal, J Vogel, S White, C Woodwark, E Birney
    posted to database genome-browser by Cortel on 2005-12-30 15:11:49 as ** along with 5 people and 1 group brant raizada pcahan1 chad_davis leelarcombe Raizada-Lab
  • The Universal Protein Resource (UniProt).
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by A Bairoch, R Apweiler, CH Wu, WC Barker, B Boeckmann, S Ferro, E Gasteiger, H Huang, R Lopez, M Magrane, MJ Martin, DA Natale, C O'Donovan, N Redaschi, LS Yeh
    posted to database protein by Cortel on 2005-12-26 12:09:03 as ** along with 7 people kuhn dullhunk fisherp happy_manatee myui cjeans incovoma
  • Selective use of an alternative stop codon and polyadenylation signal within intron sequences leads to a truncated topoisomerase II alpha messenger RNA and protein in human HL-60 leukemia cells selected for resistance to mitoxantrone.
    Cancer Res, Vol. 55, No. 21. (1 November 1995), pp. 4962-4971.
    by WG Harker, DL Slade, RL Parr, MH Holguin
    posted to multiple_polyadenylation ptc stop_codon by Cortel on 2005-12-26 07:04:33 as **
  • Exon selection in alpha-tropomyosin mRNA is regulated by the antagonistic action of RBM4 and PTB.
    Mol Cell Biol, Vol. 25, No. 22. (November 2005), pp. 10111-10121.
    by JC Lin, WY Tarn
    posted to as ptb by Cortel on 2005-12-25 06:48:05 as **
  • Natural antisense as potential regulator of alternative initiation, splicing and termination.
    In Silico Biol, Vol. 5, No. 4. (17 May 2005)
    by Espen Enerly, Zeng Sheng, Kuo-Bin B Li
    posted to anti-sense as bioinformatics nat by Cortel on 2005-12-25 06:46:55 as **
  • Alternative splicing: A new drug target of the post-genome era.
    Biochim Biophys Acta, Vol. 1754, No. 1-2. (30 December 2005), pp. 324-331.
    by M Hagiwara
    posted to as review by Cortel on 2005-12-25 06:45:47 as **
  • Changes in alternative splicing of human and mouse genes are accompanied by faster evolution of constitutive exons.
    Mol Biol Evol, Vol. 22, No. 11. (November 2005), pp. 2198-2208.
    by BP Cusack, KH Wolfe
    posted to as comparative_genomics evolution by Cortel on 2005-12-25 06:45:24 as ** along with 2 people radek hpaces
  • Alternatively spliced lipin isoforms exhibit distinct expression pattern, subcellular localization, and role in adipogenesis.
    J Biol Chem, Vol. 280, No. 38. (23 September 2005), pp. 32883-32889.
    by M Péterfy, J Phan, K Reue
    posted to as dsl isoforms by Cortel on 2005-12-25 06:44:58 as **
  • The splicing machinery is a genetic modifier of disease severity.
    Trends Genet, Vol. 21, No. 9. (September 2005), pp. 480-483.
    by M Nissim-Rafinia, B Kerem
    posted to as review by Cortel on 2005-12-25 06:44:19 as **
  • Alternative splicing and promoter use in the human GABRA2 gene.
    Brain Res Mol Brain Res, Vol. 137, No. 1-2. (13 June 2005), pp. 174-183.
    by H Tian, HJ Chen, TH Cross, HJ Edenberg
    posted to as isoforms by Cortel on 2005-12-25 06:43:49 as **
  • A complex pattern of mutations and abnormal splicing of Smad4 is present in thyroid tumours
    Oncogene, Vol. aop, No. current.
    by Davide Lazzereschi, Francesco Nardi, Alessandra Turco, Laura Ottini, Cristina D'Amico, Renato Mariani-Costantini, Alberto Gulino, Anna Coppa, Anna Coppa
    posted to as isoforms by Cortel on 2005-12-25 06:43:33 as **
  • Gene splice sites correlate with nucleosome positions.
    Gene, Vol. 352 (6 June 2005), pp. 57-62.
    by S Kogan, EN Trifonov
    posted to as bioinformatics isoforms by Cortel on 2005-12-25 06:43:15 as ** along with 2 people and 1 group shantanu nucleosome Chromatin
  • Lack of telomerase activity in lung carcinoids is dependent on human telomerase reverse transcriptase transcription and alternative splicing and is associated with long telomeres.
    Clin Cancer Res, Vol. 11, No. 8. (15 April 2005), pp. 2832-2839.
    by N Zaffaroni, R Villa, U Pastorino, R Cirincione, M Incarbone, M Alloisio, M Curto, S Pilotti, MG Daidone
    posted to as isoforms by Cortel on 2005-12-25 06:42:38 as **
  • An SVM-based system for predicting protein subnuclear localizations.
    BMC Bioinformatics, Vol. 6, No. 1. (7 December 2005)
    by Zhengdeng Lei, Yang Dai
    posted to prediction subcellular_localization svm by Cortel on 2005-12-24 20:45:02 as ** along with 1 person mloewer
  • Predicting protein subcellular localization: past, present, and future.
    Genomics Proteomics Bioinformatics, Vol. 2, No. 4. (November 2004), pp. 209-215.
    by P Dönnes, A Höglund
    posted to prediction review subcellular_localization by Cortel on 2005-12-24 17:18:00 as **
  • Better prediction of sub-cellular localization by combining evolutionary and structural information.
    Proteins, Vol. 53, No. 4. (1 December 2003), pp. 917-930.
    by R Nair, B Rost
    posted to prediction subcellular_localization by Cortel on 2005-12-24 17:08:04 as **
  • Prediction of subcellular localization using sequence-biased recurrent networks.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2279-2286.
    by M Bodén, J Hawkins
    posted to prediction subcellular_localization web_server by Cortel on 2005-12-24 16:37:13 as **
  • High-throughput protein analysis integrating bioinformatics and experimental assays.
    Nucleic Acids Res, Vol. 32, No. 2. (2004), pp. 742-748.
    by C del Val, A Mehrle, M Falkenhahn, M Seiler, KH Glatting, A Poustka, S Suhai, S Wiemann
    posted to flcdna subcellular_localization by Cortel on 2005-12-24 16:33:08 as ** along with 1 person surendrk
  • PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3613-3617.
    by JL Gardy, C Spencer, K Wang, M Ester, GE Tusnády, I Simon, S Hua, K deFays, C Lambert, K Nakai, FS Brinkman
    posted to algorithm prediction subcellular_localization by Cortel on 2005-12-24 16:31:48 as ** along with 1 person rph
  • Remote homology detection: a motif based approach.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by A Ben-Hur, D Brutlag
    posted to homology motif_detection svm by Cortel on 2005-12-24 16:29:28 as ** along with 2 people and 1 group ujh okarsligil Bioinformatics
  • Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs.
    Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1656-1663.
    by KJ Park, M Kanehisa
    posted to prediction subcellular_localization by Cortel on 2005-12-24 16:16:18 as ** along with 1 person tmmurali
  • Global analysis of protein localization in budding yeast.
    Nature, Vol. 425, No. 6959. (16 October 2003), pp. 686-691.
    by WK Huh, JV Falvo, LC Gerke, AS Carroll, RW Howson, JS Weissman, EK O'Shea
    posted to localizome subcellular_localization by Cortel on 2005-12-24 16:15:46 as ** along with 9 people and 1 group hplatero lfriedl opheliav rebeccahainess nirfriedman gurkanbebek koller raiyar iris_2001 kdl
  • pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties.
    BMC Bioinformatics, Vol. 6, No. 1. (17 June 2005)
    by Deepak Sarda, Gek Huey H Chua, Kuo-Bin B Li, Arun Krishnan
    posted to prediction subcellular_localization by Cortel on 2005-12-24 16:14:35 as ** along with 1 person tmmurali
  • Predicting subcellular localization of proteins using machine-learned classifiers.
    Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 547-556.
    by Z Lu, D Szafron, R Greiner, P Lu, DS Wishart, B Poulin, J Anvik, C Macdonell, R Eisner
    posted to prediction subcellular_localization by Cortel on 2005-12-24 16:13:59 as ** along with 1 person ujh
  • Automatic prediction of protein function.
    Cell Mol Life Sci, Vol. 60, No. 12. (December 2003), pp. 2637-2650.
    by B Rost, J Liu, R Nair, KO Wrzeszczynski, Y Ofran
    posted to prediction review subcellular_localization by Cortel on 2005-12-24 16:03:15 as **
  • Mimicking cellular sorting improves prediction of subcellular localization.
    J Mol Biol, Vol. 348, No. 1. (22 April 2005), pp. 85-100.
    by R Nair, B Rost
    posted to algorithm prediction subcellular_localization by Cortel on 2005-12-24 15:47:43 as **
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