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CharlesMs summer2008 [58 articles]

Neue Publikationen in CharlesMs Bibliothek eingetragen unter dem Bezeichner: summer2008. You can also see everyone's summer2008.
  • Multiple sequence alignment
    Current Opinion in Structural Biology, Vol. 16, No. 3. (June 2006), pp. 368-373.
    by Robert C Edgar, Serafim Batzoglou
    posted to summer2008 by CharlesM on 2008-09-01 14:28:09 as ** along with 8 people and 1 group treangen druvus caporaso rabio cjeans mingzhi edvin nklee biomedical-nlp
  • MAFFT version 5: improvement in accuracy of multiple sequence alignment.
    Nucleic Acids Res, Vol. 33, No. 2. (2005), pp. 511-518.
    by K Katoh, K Kuma, H Toh, T Miyata
    posted to summer2008 by CharlesM on 2008-09-01 14:26:00 as ** along with 4 people and 1 group caporaso rabio timflutre urgi biomedical-nlp
  • http://www.ncbi.nlm.nih.gov/
    posted to summer2008 by CharlesM on 2008-09-01 14:20:46 as **
  • Kalign--an accurate and fast multiple sequence alignment algorithm.
    BMC Bioinformatics, Vol. 6 (2005)
    by T Lassmann, EL Sonnhammer
    posted to summer2008 by CharlesM on 2008-09-01 14:19:14 as ** along with 2 people knaseanka Haggan
  • http://rana.lbl.gov/drosophila/caf1.html
    posted to summer2008 by CharlesM on 2008-09-01 14:16:54 as **
  • The Jalview Java alignment editor.
    Bioinformatics, Vol. 20, No. 3. (12 February 2004), pp. 426-427.
    by M Clamp, J Cuff, SM Searle, GJ Barton
    posted to summer2008 by CharlesM on 2008-08-31 23:11:22 as ** along with 2 people and 2 groups jwm kcrawlik Radiation_Damage Stressosome
  • ALTERNATIVE SPLICING OF PRE-mRNA: Developmental Consequences and Mechanisms of Regulation
    Annual Review of Genetics, Vol. 32, No. 1. (1998), pp. 279-305.
    by Javier A Lopez
    posted to summer2008 by CharlesM on 2008-08-29 10:08:47 as **
  • Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level
    Mol Biol Evol, Vol. 22, No. 12. (1 December 2005), pp. 2472-2479.
    by Jianzhi Zhang, Rasmus Nielsen, Ziheng Yang
    posted to summer2008 by CharlesM on 2008-08-26 11:16:50 as ** along with 5 people and 1 group stevanspringer AaronDarling usagi-kirin Garamonfok mingzhi FAB-lab
  • Associations of D. pseudoobscura GLEANR gene predictions (Release 2.1) with previously known genes in FlyBase
    (2008)
    by Flybase
    posted to summer2008 by CharlesM on 2008-08-25 18:23:59 as **
  • Neutral Evolution of the Sex-Determining Gene transformer in Drosophila
    Genetics, Vol. 154, No. 4. (1 April 2000), pp. 1711-1720.
    by Bryant F Mcallister, Gilean A Mcvean
    posted to summer2008 by CharlesM on 2008-08-25 18:18:38 as **
  • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402.
    by SF Altschul, TL Madden, AA Schäffer, J Zhang, Z Zhang, W Miller, DJ Lipman
    posted to summer2008 by CharlesM on 2008-08-25 16:42:07 as ** along with 51 people and 4 groups daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita leelarcombe CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti EisenLab biomedical-nlp Microbial-Ecology Plantandetc
  • Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection
    Molecular Biology and Evolution, Vol. 22, No. 4. (April 2005), pp. 1107-1118.
    by Ziheng Yang, Wendy S Wong, Rasmus Nielsen
    posted to summer2008 by CharlesM on 2008-08-25 16:24:57 as ** along with 6 people and 1 group rabu BioNica Natasha stajich Garamonfok skumagai Berkeley Mycology
  • fruitless splicing specifies male courtship behavior in Drosophila.
    Cell, Vol. 121, No. 5. (3 June 2005), pp. 785-794.
    by E Demir, BJ Dickson
    posted to summer2008 by CharlesM on 2008-08-20 12:03:24 as ** along with 2 people and 1 group brian wrowell Cline_lab
  • Common denominators for sex.
    Current biology : CB, Vol. 2, No. 12. (December 1992), pp. 629-631.
    by SM Parkhurst, D Ish-Horowicz
    posted to summer2008 by CharlesM on 2008-08-20 11:20:30 as **
  • Local resource enhancement and sex ratios in a primitively social bee
    Nature, Vol. 331, No. 6154. (28 January 1988), pp. 346-348.
    by Michael P Schwarz
    posted to summer2008 by CharlesM on 2008-08-19 20:55:14 as **
  • Sex Ratio and Local Resource Competition in a Prosimian Primate
    Science, Vol. 201, No. 4351. (14 July 1978), pp. 163-165.
    by Anne BARRETT Clark
    posted to summer2008 by CharlesM on 2008-08-19 20:53:44 as **
  • Extraordinary Sex Ratios
    Science, Vol. 156 (1967), pp. 477-488.
    by WD Hamilton
    posted to summer2008 by CharlesM on 2008-08-19 20:51:48 as **
  • The Evolution of Mammalian Sex Chromosomes and the Origin of Sex Determining Genes [and Discussion]
    Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 350, No. 1333. (29 November 1995), pp. 305-312.
    by Jennifer A Graves, MA Ferguson-Smith, A Mclaren, U Mittwoch, MB Renfree, P Burgoyne
    posted to summer2008 by CharlesM on 2008-08-19 19:12:16 as **
  • Sex ratio evolution when fitness varies
    Heredity, Vol. 46, No. 1. (February 1981), pp. 9-26.
    by JJ Bull
    posted to summer2008 by CharlesM on 2008-08-19 19:00:06 as **
  • Evolutionary consequences of cytoplasmic sex ratio distorters
    Evolutionary Ecology, Vol. 4, No. 3. (10 July 1990), pp. 235-248.
    by Douglas Taylor
    posted to summer2008 by CharlesM on 2008-08-19 17:37:20 as **
  • Moving up the hierarchy: a hypothesis on the evolution of a genetic sex determination pathway.
    BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 17, No. 1. (January 1995), pp. 71-77.
    by AS Wilkins
    posted to summer2008 by CharlesM on 2008-08-19 13:46:14 as ** along with 1 person and 1 group tharris C. elegans / WormBase
  • Evidence for the evolutionary nascence of a novel sex determination pathway in honeybees
    Nature (25 June 2008)
    by Martin Hasselmann, Tanja Gempe, Morten Schiøtt, Carlos G Nunes-Silva, Marianne Otte, Martin Beye
    posted to summer2008 by CharlesM on 2008-08-19 10:27:04 as ** along with 1 person usagi-kirin
  • Sex determination in Drosophila melanogaster and Musca domestica converges at the level of the terminal regulator doublesex.
    Development genes and evolution, Vol. 214, No. 1. (January 2004), pp. 29-42.
    by M Hediger, G Burghardt, C Siegenthaler, N Buser, D Hilfiker-Kleiner, A Dübendorfer, D Bopp
    posted to summer2008 by CharlesM on 2008-08-19 10:12:29 as **
  • Dmrt1, a gene related to worm and fly sexual regulators, is required for mammalian testis differentiation.
    Genes & development, Vol. 14, No. 20. (15 October 2000), pp. 2587-2595.
    by CS Raymond, MW Murphy, MG O'Sullivan, VJ Bardwell, D Zarkower
    posted to summer2008 by CharlesM on 2008-08-19 09:51:20 as **
  • Musca domestica, a window on the evolution of sex-determining mechanisms in insects.
    The International journal of developmental biology, Vol. 46, No. 1. (January 2002), pp. 75-79.
    by A Dubendorfer, M Hediger, G Burghardt, D Bopp
    posted to summer2008 by CharlesM on 2008-08-19 09:46:40 as **
  • A homologue of the Drosophila doublesex gene is transcribed into sex-specific mRNA isoforms in the silkworm, Bombyx mori
    Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology, Vol. 128, No. 1. (January 2001), pp. 145-158.
    by Fumi Ohbayashi, Masataka G Suzuki, Kazuei Mita, Kazuhiro Okano, Toru Shimada
    posted to summer2008 by CharlesM on 2008-08-19 09:45:06 as **
  • Inference of selection from multiple species alignments
    Current Opinion in Genetics & Development, Vol. 12, No. 6. (1 December 2002), pp. 688-694.
    by Ziheng Yang
    posted to summer2008 by CharlesM on 2008-08-15 19:17:46 as ** along with 1 person skembel
  • Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination.
    Genetics, Vol. 151, No. 1. (January 1999), pp. 221-238.
    by H Akashi
    posted to summer2008 by CharlesM on 2008-08-15 19:11:22 as ** along with 2 people bpb skumagai
  • Handbook of Statistical Genetics
    (22 October 2007)
    posted to summer2008 by CharlesM on 2008-08-15 18:58:49 as **
  • Computational Molecular Evolution (Oxford Series in Ecology and Evolution)
    (07 December 2006)
    by Ziheng Yang
    posted to summer2008 by CharlesM on 2008-08-15 18:28:03 as ** along with 3 people treangen gjuggler druvus
  • A codon-based model of nucleotide substitution for protein-coding DNA sequences.
    Mol Biol Evol, Vol. 11, No. 5. (September 1994), pp. 725-736.
    by N Goldman, Z Yang
    posted to summer2008 by CharlesM on 2008-08-15 09:46:47 as ** along with 6 people and 1 group hdopazo BioNica usagi-kirin mingzhi gjuggler AtoZ BioinfoCIPF
  • Accuracy and Power of Bayes Prediction of Amino Acid Sites Under Positive Selection
    Mol Biol Evol, Vol. 19, No. 6. (1 June 2002), pp. 950-958.
    by Maria Anisimova, Joseph P Bielawski, Ziheng Yang
    posted to summer2008 by CharlesM on 2008-08-13 19:20:04 as ** along with 2 people gjuggler rabu
  • Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution.
    Mol Biol Evol, Vol. 18, No. 8. (August 2001), pp. 1585-1592.
    by M Anisimova, JP Bielawski, Z Yang
    posted to summer2008 by CharlesM on 2008-08-13 19:19:34 as ** along with 3 people and 1 group gjuggler stevanspringer ankur_iitg FAB-lab
  • Accuracy and Power of Statistical Methods for Detecting Adaptive Evolution in Protein Coding Sequences and for Identifying Positively Selected Sites
    Genetics, Vol. 168, No. 2. (1 October 2004), pp. 1041-1051.
    by Wendy S Wong, Ziheng Yang, Nick Goldman, Rasmus Nielsen
    posted to summer2008 by CharlesM on 2008-08-13 19:18:23 as ** along with 4 people BioNica Natasha timflutre gjuggler
  • Evidence for convergent nucleotide evolution and high allelic turnover rates at the complementary sex determiner gene of Western and Asian honeybees.
    Molecular biology and evolution, Vol. 25, No. 4. (April 2008), pp. 696-708.
    by M Hasselmann, X Vekemans, J Pflugfelder, N Koeniger, G Koeniger, S Tingek, M Beye
    posted to summer2008 by CharlesM on 2008-07-28 11:20:42 as **
  • Sex-specific control of Sex-lethal is a conserved mechanism for sex determination in the genus Drosophila
    Development, Vol. 122, No. 3. (1 March 1996), pp. 971-982.
    by D Bopp, G Calhoun, JI Horabin, M Samuels, P Schedl
    posted to summer2008 by CharlesM on 2008-06-25 11:18:02 as **
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
    posted to summer2008 by CharlesM on 2008-06-17 16:51:03 as ** along with 23 people and 6 groups jbsaltz druvus pradiptaray pengchy operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 hpaces caseybrown emptyhb urgi noor PetrovLab isimpson balicea cisevol hdopazo Bioinformatics EisenLab csb_journal_club_public Berkeley Mycology BergmanLab Drosophila-Genetics-Genomics-2008
  • A genomic analysis of Drosophila somatic sexual differentiation and its regulation
    Development, Vol. 131, No. 9. (1 May 2004), pp. 2007-2021.
    by Michelle N Arbeitman, Alice A Fleming, Mark L Siegal, Brian H Null, Bruce S Baker
    posted to summer2008 by CharlesM on 2008-06-11 08:54:46 as ** along with 1 person jbsaltz
  • The gene doublesex of Anastrepha fruit flies (Diptera, Tephritidae) and its evolution in insects
    Development Genes and Evolution, Vol. 217, No. 10. (5 October 2007), pp. 725-731.
    by María Ruiz, José Eirín-López, Rominy Stefani, André Perondini, Denise Selivon, Lucas Sánchez
    posted to summer2008 by CharlesM on 2008-06-11 08:47:48 as **
  • Key aspects of the primary sex determination mechanism are conserved across the genus Drosophila
    Development, Vol. 125, No. 16. (1 August 1998), pp. 3259-3268.
    by JW Erickson, TW Cline
    posted to summer2008 by CharlesM on 2008-06-09 09:13:51 as **
  • The Ceratitis capitata homologue of the Drosophila sex-determining gene sex-lethal is structurally conserved, but not sex-specifically regulated
    Development, Vol. 125, No. 8. (1 April 1998), pp. 1495-1500.
    by G Saccone, I Peluso, D Artiaco, E Giordano, D Bopp, LC Polito
    posted to summer2008 by CharlesM on 2008-06-09 09:13:07 as **
  • Genomic Organisation of the Neural Sex Determination Gene Fruitless (Fuu) in the Hawaiian Species Drosophila Siluestris and the Conservation of the Fru BTB Protein-Protein-Binding Domain Throughout Evolution*
    Hereditas, Vol. 132, No. 1. (2000), pp. 67-78.
    by Terence Davis, Joyce Kurihara, Erin Yoshino, Daisuke Yamamoto
    posted to summer2008 by CharlesM on 2008-06-09 09:12:17 as **
  • Novel Paralogy Relations Among Human Chromosomes Support a Link between the Phylogeny of doublesex-Related Genes and the Evolution of Sex Determination
    Genomics, Vol. 79, No. 3. (March 2002), pp. 333-343.
    by Chris Ottolenghi, Marc Fellous, Marcello Barbieri, Ken Mcelreavey
    posted to summer2008 by CharlesM on 2008-06-09 09:10:20 as **
  • The Genetic Analysis of snf: A Drosophila Sex Determination Gene Required for Activation of Sex-lethal in Both the Germline and the Soma
    Genetics, Vol. 130, No. 3. (1 March 1992), pp. 547-554.
    by HK Salz
    posted to summer2008 by CharlesM on 2008-06-09 09:04:20 as **
  • Sex-lethal, the master sex-determining gene in Drosophila, is not sex-specifically regulated in Musca domestica
    Development, Vol. 125, No. 8. (1 April 1998), pp. 1487-1494.
    by M Meise, D Hilfiker-Kleiner, A Dubendorfer, C Brunner, R Nothiger, D Bopp
    posted to summer2008 by CharlesM on 2008-06-09 09:03:26 as **
  • The evolution of chromosomal sex determination and dosage compensation
    Current Biology, Vol. 6, No. 2. (February 1996), pp. 149-162.
    by Brian Charlesworth
    posted to summer2008 by CharlesM on 2008-06-09 09:02:14 as **
  • PAML 4: Phylogenetic Analysis by Maximum Likelihood
    Mol Biol Evol (4 May 2007), msm088.
    by Ziheng Yang
    posted to summer2008 by CharlesM on 2008-06-08 20:02:10 as ** along with 9 people and 1 group druvus operon akifumi hdopazo BioNica stajich ryanraaum RamuAnandakrishnan Ema Berkeley Mycology
  • EVOLUTIONARY RELATIONSHIP OF DNA SEQUENCES IN FINITE POPULATIONS
    Genetics, Vol. 105, No. 2. (1 October 1983), pp. 437-460.
    by Fumio Tajima
    posted to summer2008 by CharlesM on 2008-06-06 10:38:31 as ** along with 1 person jmeppley
  • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.
    Mol Biol Evol, Vol. 3, No. 5. (September 1986), pp. 418-426.
    by M Nei, T Gojobori
    posted to summer2008 by CharlesM on 2008-06-06 10:27:05 as ** along with 5 people and 1 group jmeppley hdopazo usagi-kirin ankur_iitg friendpine BioinfoCIPF
  • On the inadmissibility of Watterson's estimator
    Theoretical Population Biology, Vol. 73, No. 2. (March 2008), pp. 212-221.
    by Andreas Futschik, Florian Gach
    posted to summer2008 by CharlesM on 2008-06-06 09:55:28 as **
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