The Jalview Java alignment editor.

by: M Clamp, J Cuff, SM Searle, GJ Barton

Bioinformatics, Vol. 20, No. 3. (12 February 2004), pp. 426-427.

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Abstract

Multiple sequence alignment remains a crucial method for understanding the function of groups of related nucleic acid and protein sequences. However, it is known that automatic multiple sequence alignments can often be improved by manual editing. Therefore, tools are needed to view and edit multiple sequence alignments. Due to growth in the sequence databases, multiple sequence alignments can often be large and difficult to view efficiently. The Jalview Java alignment editor is presented here, which enables fast viewing and editing of large multiple sequence alignments.

@article{jalview, abstract = {Multiple sequence alignment remains a crucial method for understanding the function of groups of related nucleic acid and protein sequences. However, it is known that automatic multiple sequence alignments can often be improved by manual editing. Therefore, tools are needed to view and edit multiple sequence alignments. Due to growth in the sequence databases, multiple sequence alignments can often be large and difficult to view efficiently. The Jalview Java alignment editor is presented here, which enables fast viewing and editing of large multiple sequence alignments.}, address = {The Wellcome Trust Sanger Institute, Hinxton, UK. michele@sanger.ac.uk}, author = {Clamp, M. and Cuff, J. and Searle, S. M. and Barton, G. J. }, citeulike-article-id = {396422}, doi = {http://dx.doi.org/10.1093/bioinformatics/btg430}, issn = {1367-4803}, journal = {Bioinformatics}, keywords = {summer2008}, month = {February}, number = {3}, pages = {426--427}, posted-at = {2008-08-31 23:11:22}, priority = {2}, title = {The Jalview Java alignment editor.}, url = {http://dx.doi.org/10.1093/bioinformatics/btg430}, volume = {20}, year = {2004} }

RIS record

TY - JOUR ID - jalview L3 - citeulike-article-id:396422 N2 - Multiple sequence alignment remains a crucial method for understanding the function of groups of related nucleic acid and protein sequences. However, it is known that automatic multiple sequence alignments can often be improved by manual editing. Therefore, tools are needed to view and edit multiple sequence alignments. Due to growth in the sequence databases, multiple sequence alignments can often be large and difficult to view efficiently. The Jalview Java alignment editor is presented here, which enables fast viewing and editing of large multiple sequence alignments. IS - 3 JF - Bioinformatics SN - 1367-4803 AD - The Wellcome Trust Sanger Institute, Hinxton, UK. michele@sanger.ac.uk EP - 427 TI - The Jalview Java alignment editor. VL - 20 SP - 426 KW - summer2008 AU - Clamp, M AU - Cuff, J AU - Searle, SM AU - Barton, GJ PY - 2004/02/12/ UR - http://dx.doi.org/10.1093/bioinformatics/btg430 ER -

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