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Ayests alignment [18 articles]

Neue Publikationen in Ayests Bibliothek eingetragen unter dem Bezeichner: alignment. You can also see everyone's alignment.
  • SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model.
    Genome Res, Vol. 13, No. 3. (March 2003), pp. 496-502.
    by M Alexandersson, S Cawley, L Pachter
    posted to alignment hmm statistics by Ayest on 2007-07-12 13:08:38 as ** along with 2 people and 1 group azazello mdimon MBLAB
  • EUGENE'HOM: A generic similarity-based gene finder using multiple homologous sequences.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3742-3745.
    by S Foissac, P Bardou, A Moisan, MJ Cros, T Schiex
    posted to software bia alignment by Ayest on 2007-01-24 08:56:52 as ** along with 1 person wenhan
  • Statistical significance in biological sequence analysis.
    Brief Bioinform, Vol. 7, No. 1. (March 2006), pp. 2-24.
    by AY Mitrophanov, M Borodovsky
    posted to alignment reviews sequence statistic by Ayest on 2006-09-26 13:14:45 as ** along with 2 people xili03 wenhan
  • Evolution at the nucleotide level: the problem of multiple whole-genome alignment.
    Hum Mol Genet, Vol. 15 Suppl 1 (15 April 2006)
    by CN Dewey, L Pachter
    posted to alignment whole_genome by Ayest on 2006-09-21 09:28:26 as ** along with 6 people and 2 groups operon tny dchughes AaronDarling echinotrix Neeperando G4ID Genetics-of-Gambling
  • MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
    BMC Bioinformatics, Vol. 7 (08 June 2006), 292.
    by Jun Wang, Peter D Keightley, Toby Johnson
    posted to alignment bioinformatic by Ayest on 2006-06-11 12:28:18 as ** along with 3 people and 1 group dpollard papamicd bozdagd EisenLab
  • A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes.
    BMC Bioinformatics, Vol. 7, No. 1. (22 May 2006)
    by Anne-Kathrin K Schultz, Ming Zhang, Thomas Leitner, Carla Kuiken, Bette Korber, Burkhard Morgenstern, Mario Stanke
    posted to alignment bioinformatic markov by Ayest on 2006-06-05 18:21:29 as **
  • Benchmarking tools for the alignment of functional noncoding DNA
    BMC Bioinformatics, Vol. 5, No. 1. (2004), pp. 6-6.
    by DA Pollard, CM Bergman, J Stoye, SE Celniker, MB Eisen
    posted to alignment by Ayest on 2006-03-06 16:48:47 as ** along with 1 person and 3 groups ppgardne MathBio Bioinformatics microRNA
  • BLAT--the BLAST-like alignment tool.
    Genome Res, Vol. 12, No. 4. (April 2002), pp. 656-664.
    by WJ Kent
    posted to alignment whole_genome by Ayest on 2006-02-28 09:29:15 as ** along with 22 people and 1 group pwais umit mmartin paszkows operon miguel pcahan1 indigoviolet mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet antonkratz yoanjacquemin talponer bozdagd gpappas EisenLab
  • Strategies and Tools for Whole-Genome Alignments
    Genome Res., Vol. 13, No. 1. (1 January 2003), pp. 73-80.
    by Olivier Couronne, Alexander Poliakov, Nicolas Bray, Tigran Ishkhanov, Dmitriy Ryaboy, Edward Rubin, Lior Pachter, Inna Dubchak
    posted to alignment evolution whole_genome by Ayest on 2006-02-28 09:24:59 as ** along with 2 people operon olivierkuro
  • Basic local alignment search tool.
    J Mol Biol, Vol. 215, No. 3. (5 October 1990), pp. 403-410.
    by SF Altschul, W Gish, W Miller, EW Myers, DJ Lipman
    posted to alignment bioinformatic by Ayest on 2006-02-24 12:45:17 as ** along with 45 people and 6 groups pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti hervelequere ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
  • Non-approximability results for optimization problems on bounded degree instances
    (2001), pp. 453-461.
    by Luca Trevisan
    posted to alignment bibtex-import bioinformatic by Ayest on 2006-02-24 12:02:57 as **
  • Hardness of approximation for non-overlapping local alignments
    Discrete Appl. Math., Vol. 137, No. 3. (March 2004), pp. 293-309.
    by Hiroyuki Nagashima, Koichi Yamazaki
    posted to alignment bibtex-import bioinformatic by Ayest on 2006-02-24 12:02:20 as **
  • Comparative genomics, minimal gene-sets and the last universal common ancestor.
    Nat Rev Microbiol, Vol. 1, No. 2. (November 2003), pp. 127-136.
    by EV Koonin
    posted to alignment evolution by Ayest on 2006-02-20 12:53:49 as ** along with 4 people and 2 groups ana dayjm radek gbart structural_bioinformatics Bioinformatics
  • Detecting overlapping coding sequences in virus genomes.
    BMC Bioinformatics, Vol. 7, No. 1. (16 February 2006)
    by Andrew E Firth, Chris M Brown
    posted to alignment bioinformatic sequence by Ayest on 2006-02-20 10:10:14 as ** along with 1 person and 1 group vwchan beta
  • A novel approach to remote homology detection: jumping alignments
    J Comput Biol, Vol. 9, No. 5. (2002), pp. 747-760.
    by R Spang, M Rehmsmeier, J Stoye
    posted to alignment bioinformatic by Ayest on 2006-02-18 14:28:08 as ** along with 1 person and 3 groups ppgardne MathBio Bioinformatics microRNA
  • Detecting interspecific recombination with a pruned probabilistic divergence measure
    Bioinformatics, Vol. 21, No. 9. (2005), pp. 1797-806.
    by Dirk Husmeier, Frank Wright
    posted to alignment bibtex-import bioinformatic evolution by Ayest on 2005-09-10 19:11:52 as **
  • Comparison of Biosequences
    Advances in Applied Mathematics, Vol. 2 (1981), pp. 482-489.
    by TF Smith, MS Waterman
    posted to alignment bibtex-import sequence by Ayest on 2005-09-10 19:11:50 as **
  • A general method applicable to the search for similarities in the amino acid sequence of two proteins.
    J. Mol. Biol., Vol. 48 (1970), pp. 443-453.
    by SB Needleman, CD Wunsch
    posted to alignment bibtex-import sequence by Ayest on 2005-09-10 19:11:50 as **
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