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Tag yeast [618 articles]

Recent papers classified by the tag yeast.
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
    posted to binding divergence site transcription yeast by zwang on 2007-08-13 07:21:50 as *** along with 16 people and 2 groups anka nklee aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb EisenLab cis-regulatory-evolution
  • Toward a Comprehensive Temperature-Sensitive Mutant Repository of the Essential Genes of Saccharomyces cerevisiae
    Molecular Cell, Vol. 30, No. 2. (25 April 2008), pp. 248-258.
    by Shay Ben-Aroya, Candice Coombes, Teresa Kwok, Kathryn A O'Donnell, Jef D Boeke, Philip Hieter
    posted to yeast mutation gene by zwang on 2008-06-02 07:17:18 as ****
  • High-throughput genetic interaction mapping in the fission yeast Schizosaccharomyces pombe
    Nature Methods, Vol. 4, No. 10. (23 September 2007), pp. 861-866.
    by Assen Roguev, Marianna Wiren, Jonathan S Weissman, Nevan J Krogan
    posted to genetic interaction yeast by zwang on 2007-10-22 08:50:57 as ** along with 4 people marck dchughes cjeans kdang
  • Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map
    Nature (21 February 2007)
    by Sean R Collins, Kyle M Miller, Nancy L Maas, Assen Roguev, Jeffrey Fillingham, Clement S Chu, Maya Schuldiner, Marinella Gebbia, Judith Recht, Michael Shales, Huiming Ding, Hong Xu, Junhong Han, Kristin Ingvarsdottir, Benjamin Cheng, Brenda Andrews, Charles Boone, Shelley L Berger, Phil Hieter, Zhiguo Zhang, Grant W Brown, James C Ingles, Andrew Emili, David C Allis, David P Toczyski, Jonathan S Weissman, Jack F Greenblatt, Nevan J Krogan
    posted to complex genetic interaction protein yeast by zwang on 2007-10-22 08:49:41 as ** along with 2 people chasmand balajis
  • Bottleneck Genes and Community Structure in the Cell Cycle Network of S. pombe
    PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e103.
    by Cécile Caretta-Cartozo, De Los, Francesco Piazza, Pietro Liò
    posted to cellcycle network structure yeast by zwang on 2007-08-18 15:14:38 as * along with 6 people Borelli jfr sandersl rahulthadani toshiaki_katayama sianbeya
  • Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 September 2007), e214.eor.
    by Hailiang Huang, Bruno Jedynak, Joel S Bader
    posted to genome-wide interaction protein y2h yeast by zwang on 2007-10-22 05:10:19 as **
  • Preferential protection of protein interaction network hubs in yeast: Evolved functionality of genetic redundancy
    Proceedings of the National Academy of Sciences (23 January 2008), 0711043105.
    by Ran Kafri, Orna Dahan, Jonathan Levy, Yitzhak Pilpel
    posted to genetic interaction network protein yeast by zwang on 2008-02-24 13:45:53 as *** along with 4 people and 1 group cjeans janek04 wsjames mclarenv Oxford Virology
  • Molecular Basis for Evolving Modularity in the Yeast Protein Interaction Network
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e226.
    by Ariel Fernández
    posted to evolution interaction network protein yeast by zwang on 2007-12-10 04:36:22 as **** along with 4 people tomhebbron niallhaslam Ema phoenixzxl
  • A Nucleosome-Guided Map of Transcription Factor Binding Sites in Yeast
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e215.
    by Leelavati Narlikar, Raluca Gordân, Alexander J Hartemink
    posted to binding site transcription yeast by zwang on 2007-12-10 04:30:58 as *** along with 5 people ihpark aalibes nklee maximilianh megraw
  • High-throughput fluorescent-based optimization of eukaryotic membrane protein overexpression and purification in Saccharomyces cerevisiae
    PNAS, Vol. 104, No. 35. (28 August 2007), pp. 13936-13941.
    by Simon Newstead, Hyun Kim, Gunnar von Heijne, So Iwata, David Drew
    posted to eukaryota fluorescent protein purification yeast by zwang on 2007-08-29 04:48:42 as *** along with 1 person happy_manatee
  • Phenotypic Mutation Rates and the Abundance of Abnormal Proteins in Yeast
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e203.
    by Martin Willensdorfer, Reinhard Bürger, Martin A Nowak
    posted to mutation phenotype protein yeast by zwang on 2007-12-10 04:21:57 as ** along with 1 person Ema
  • Plasmid-chromosome shuffling for non-deletion alleles in yeast
    Nature Methods, Vol. 5, No. 2. (13 January 2008), pp. 167-169.
    by Zhiwei Huang, Richard S Sucgang, Yu-Yi Lin, Xiaomin Shi, Jef D Boeke, Xuewen Pan
    posted to yeast mutation gene by zwang on 2008-07-01 08:38:15 as *** along with 1 person csaveanu
  • A pooling-deconvolution strategy for biological network elucidation
    Nature Methods, Vol. 3, No. 3. (17 February 2006), pp. 183-189.
    by Fulai Jin, Tony Hazbun, Gregory A Michaud, Michael Salcius, Paul F Predki, Stanley Fields, Jing Huang
    posted to y2h yeast by zwang on 2007-07-05 14:52:30 as ** along with 4 people jyuh Ayest gurkanbebek cjeans
  • Specific binding of a Pop6/Pop7 heterodimer to the P3 stem of the yeast RNase MRP and RNase P RNAs
    RNA (23 August 2007), rna.654407.
    by Anna Perederina, Olga Esakova, Hasan Koc, Mark E Schmitt, Andrey S Krasilnikov
    posted to binding domain rna rnasep site yeast by zwang on 2007-09-02 07:31:22 as *****
  • Functional characterization of the conserved amino acids in Pop1p, the largest common protein subunit of yeast RNases P and MRP
    RNA, Vol. 12, No. 6. (1 June 2006), pp. 1023-1037.
    by Shaohua Xiao, John Hsieh, Rebecca L Nugent, Daniel J Coughlin, Carol A Fierke, David R Engelke
    posted to protein rnasep yeast by zwang on 2007-07-26 08:47:28 as ****
  • A Discrete Class of Intergenic DNA Dictates Meiotic DNA Break Hotspots in Fission Yeast
    PLoS Genetics, Vol. 3, No. 8. (1 August 2007), e141.
    by Gareth A Cromie, Randy W Hyppa, Hugh P Cam, Joseph A Farah, Shiv I Grewal, Gerald R Smith
    posted to dna yeast by zwang on 2007-09-03 15:17:43 as *
  • A noncoding RNA in Saccharomyces cerevisiae is an RNase P substrate.
    RNA, Vol. 13, No. 5. (May 2007), pp. 682-690.
    by L Yang, S Altman
    posted to ncrna rnasep yeast by zwang on 2007-07-26 11:35:42 as ** along with 1 person alexg
  • Evolutionary models for formation of network motifs and modularity in the Saccharomyces transcription factor network.
    PLoS Comput Biol, Vol. 3, No. 10. (26 October 2007), pp. 1993-2002.
    by JJ Ward, JM Thornton
    posted to evolution modeling motif network transcription yeast by zwang on 2007-11-20 08:52:20 as ** along with 2 people cabbagezs grottenolm
  • High-precision mapping of protein protein interfaces: an integrated genetic strategy combining en masse mutagenesis and DNA-level parallel analysis on a yeast two-hybrid platform.
    Nucleic Acids Res (15 August 2007)
    by Maria Pajunen, Hilkka Turakainen, Eini Poussu, Johan Peränen, Mauno Vihinen, Harri Savilahti
    posted to interaction interface mutation protein yeast by zwang on 2007-09-17 09:52:27 as ***** along with 2 people Terkko yeastyboy
  • Use of RNase P for efficient preparation of yeast tRNATyr transcript and its mutants.
    J Biochem (Tokyo), Vol. 139, No. 1. (January 2006), pp. 123-127.
    by J Fukunaga, M Gouda, K Umeda, S Ohno, T Yokogawa, K Nishikawa
    posted to mutation rnasep trna yeast by zwang on 2007-07-26 08:28:06 as ***
  • Evolution: A gene is born
    Nature Reviews Genetics, Vol. 9, No. 6., pp. 415-415.
    by Tanita Casci
    posted to yeast gene evolution by zwang on 2008-05-20 15:52:22 as **** along with 1 person cabbagesofdoom
  • A Conserved Element in the Yeast RNase MRP RNA Subunit can Participate in a Long-range Base-pairing Interaction
    Journal of Molecular Biology, Vol. 341, No. 2. (6 August 2004), pp. 375-388.
    by Scott C Walker, Johanna M Avis
    posted to element interaction rna rnasep subunit yeast by zwang on 2007-07-26 19:21:56 as ****
  • Superfamily Assignments for the Yeast Proteome through Integration of Structure Prediction with the Gene Ontology
    PLoS Biology, Vol. 5, No. 4. (1 April 2007), e76.
    by Lars Malmström, Michael Riffle, Charlie E Strauss, Dylan Chivian, Trisha N Davis, Richard Bonneau, David Baker
    posted to gene prediction structure yeast by zwang on 2007-04-19 15:17:08 as *
  • A synthetic gene network for tuning protein degradation in Saccharomyces cerevisiae
    Mol Syst Biol, Vol. 3 (31 July 2007)
    by Chris Grilly, Jesse Stricker, Wyming L Pang, Matthew R Bennett, Jeff Hasty
    posted to interaction network protein synthetic yeast by zwang on 2007-08-01 07:24:07 as *** along with 3 people balicea austin kfm9876
  • An in Vivo Map of the Yeast Protein Interactome
    Science, Vol. 320, No. 5882. (13 June 2008), pp. 1465-1470.
    by Kirill Tarassov, Vincent Messier, Christian R Landry, Stevo Radinovic, Mercedes M Molina, Igor Shames, Yelena Malitskaya, Jackie Vogel, Howard Bussey, Stephen W Michnick
    posted to yeast protein interaction genome by zwang on 2008-06-27 03:58:03 as ** along with 3 people balicea renatomilani Petersarkies
  • Yeast life span extension by depletion of 60s ribosomal subunits is mediated by Gcn4.
    Cell, Vol. 133, No. 2. (18 April 2008), pp. 292-302.
    by KK Steffen, VL MacKay, EO Kerr, M Tsuchiya, D Hu, LA Fox, N Dang, ED Johnston, JA Oakes, BN Tchao, DN Pak, S Fields, BK Kennedy, M Kaeberlein
    posted to yeast gene deletion complex cellcycle by zwang on 2008-07-10 09:28:01 as **
  • A genomic integration method to visualize localization of endogenous mRNAs in living yeast
    Nat Meth, Vol. 4, No. 5. (May 2007), pp. 409-412.
    by Liora Haim, Gadi Zipor, Stella Aronov, Jeffrey E Gerst
    posted to endogenous localization rna visualization yeast by zwang on 2007-04-27 12:17:13 as *** along with 1 person jyuh
  • A yeast two-hybrid smart-pool-array system for protein-interaction mapping
    Nat Meth, Vol. 4, No. 5. (May 2007), pp. 405-407.
    by Fulai Jin, Larisa Avramova, Jing Huang, Tony Hazbun
    posted to interaction protein y2h yeast by zwang on 2007-04-27 12:15:28 as *** along with 2 people jyuh Dualsystems
  • Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast
    Mol Syst Biol, Vol. 3 (5 June 2007)
    by Ronish Gupta, Bart Kus, Christopher Fladd, James Wasmuth, Raffi Tonikian, Sachdev Sidhu, Nevan J Krogan, John Parkinson, Daniela Rotin
    posted to interaction microarray protein yeast by zwang on 2007-06-06 01:20:33 as **
  • Pathway redundancy and protein essentiality revealed in the Saccharomyces cerevisiae interaction networks
    Mol Syst Biol, Vol. 3 (17 April 2007)
    by Igor Ulitsky, Ron Shamir
    posted to interaction network protein yeast by zwang on 2007-04-17 17:30:27 as **** along with 1 person nicoleq
  • Exploring genetic interactions and networks with yeast
    Nature Reviews Genetics, Vol. 8, No. 6., pp. 437-449.
    by Charles Boone, Howard Bussey, Brenda J Andrews
    posted to genetic interaction network yeast by zwang on 2007-05-28 02:00:05 as **** along with 4 people hryk marck jyuh balajis
  • 3D models of yeast RNase P/MRP proteins Rpp1p and Pop3p
    RNA, Vol. 11, No. 2. (1 February 2005), pp. 123-127.
    by Mensur Dlakic
    posted to prediction protein rnasep structure subunit yeast by zwang on 2007-07-26 15:46:54 as ****
  • The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication
    Proceedings of the National Academy of Sciences (16 January 2008), 0707293105.
    by Aviva Presser, Michael B Elowitz, Manolis Kellis, Roy Kishony
    posted to dynamics evolution interaction network protein yeast by zwang on 2008-01-24 13:09:27 as *** along with 3 people cjeans roys phoenixzxl
  • Yeast surface display for protein engineering and characterization
    Current Opinion in Structural Biology, Vol. 17, No. 4. (August 2007), pp. 467-473.
    by Annie S Gai, Dane K Wittrup
    posted to interaction protein yeast ysd by zwang on 2007-09-30 11:33:01 as ***
  • Nonlinear differential equation model for quantification of transcriptional regulation applied to microarray data of Saccharomyces cerevisiae
    Nucleic Acids Research, Vol. 35, No. 1. (January 2007), pp. 279-287.
    by Vu, Tra Thi, Vohradsky, Jiri
    posted to microarray regulation transcription yeast by zwang on 2007-04-16 13:48:37 as **
  • Limitations of yeast surface display in engineering proteins of high thermostability
    Protein Engineering, Design and Selection, Vol. 19, No. 5. (May 2006), pp. 211-217.
    by Park, Sheldon, Xu, Yao, Stowell, Xiaoran Fu, Gai, Feng, Saven, G Jeffery, Boder, T Eric
    posted to protein yeast ysd by zwang on 2007-07-29 11:40:32 as ***
  • Yeast surface display for screening combinatorial polypeptide libraries
    Nat Biotech, Vol. 15, No. 6. (June 1997), pp. 553-557.
    by Eric T Boder, Dane K Wittrup
    posted to yeast ysd by zwang on 2007-07-29 11:40:08 as ***
  • A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription
    Nature Genetics, Vol. 39, No. 3. (26 February 2007), pp. 303-309.
    by Israel Steinfeld, Ron Shamir, Martin Kupiec
    posted to chromatin genome-wide transcription yeast by zwang on 2007-03-19 13:32:22 as **
  • A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types.
    Mol Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350.
    by O Elemento, N Slonim, S Tavazoie
    posted to clustering genome motif prediction yeast by zwang on 2007-11-01 02:15:02 as *** along with 12 people and 2 groups ana brant cwbrown aswin cjeans cabbagezs nklee maximilianh idonaldson sb_journal_club kristen barwil EisenLab Motif Discovery
  • GFP-based optimization scheme for the overexpression and purification of eukaryotic membrane proteins in Saccharomyces cerevisiae
    Nat. Protocols, Vol. 3, No. 5. (April 2008), pp. 784-798.
    by David Drew, Simon Newstead, Yo Sonoda, Hyun Kim, Gunnar von Heijne, So Iwata
    posted to yeast purification protein expression by zwang on 2008-06-16 01:50:58 as ****
  • HST3 is regulated by MEC1-dependent proteolysis and controls the S phase checkpoint and sister chromatid cohesion by deacetylating histone H3 at lysine 56.
    J Biol Chem (30 October 2007)
    by Safia Thaminy, Benjamin Newcomb, Jessica Kim, Tonibelle Gatbonton, Eric Foss, Julian Simon, Antonio Bedalov
    posted to acetylation deacetylation h3k56 histone histone-modification phosphorylation sirt2 sirtuin yeast by zhlei on 2007-12-13 16:49:46 as **
  • Aging, life span, and senescence
    Proceedings of the National Academy of Sciences, Vol. 95, No. 19. (15 September 1998), pp. 11034-11036.
    by Leonard Guarente, Gary Ruvkun, Richard Amasino
    posted to aging ercs rdna sir2 yeast by zhlei on 2007-09-17 21:22:24 as **
  • Sir2 Deacetylates Histone H3 Lysine 56 to Regulate Telomeric Heterochromatin Structure in Yeast
    Molecular Cell, Vol. 27, No. 6. (21 September 2007), pp. 890-900.
    by Feng Xu, Qiongyi Zhang, Kangling Zhang, Wei Xie, Michael Grunstein
    posted to yeast telomere sir2 heterochromatin by zhlei on 2008-04-28 23:06:15 as ** along with 1 person onufriev
  • Stay Close to Your Sister
    Molecular Cell, Vol. 14, No. 4. (21 May 2004), pp. 418-420.
    by Robert J Reid, Rodney Rothstein
    posted to erc longevity rdna sir2 yeast by zhlei on 2007-09-17 20:52:49 as **
  • Heterochromatin is refractory to gamma-H2AX modification in yeast and mammals
    J. Cell Biol., Vol. 178, No. 2. (16 July 2007), pp. 209-218.
    by Jung-Ae Kim, Michael Kruhlak, Farokh Dotiwala, Andre Nussenzweig, James E Haber
    posted to chromatin chromatin-remodeling-modification dna-damage h2a h2ax histone phosphorylation yeast by zhlei on 2007-12-19 20:35:32 as **
  • Sir2 and calorie restriction in yeast: A skeptical perspective
    Ageing Research Reviews, Vol. 6, No. 2. (August 2007), pp. 128-140.
    by Matt Kaeberlein, Powers
    posted to yeast sir2 cr calorie-restriction by zhlei on 2008-04-03 14:52:49 as **
  • When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation
    Mol Syst Biol, Vol. 2 (2006)
    by MTAP Kresnowati, WA van Winden, MJH Almering, A Proell, C Ras, TA Knijnenburg, PAS Daran-Lapujade, JT Pronk, JJ Heijnen, JM Daran
    posted to dynamics metabolism network simulation yeast by yyin02 on 2006-09-26 20:14:55 as ** along with 2 people alexg westoll
  • Prion Protein Repeat Expansion Results in Increased Aggregation and Reveals Phenotypic Variability
    Mol. Cell. Biol., Vol. 27, No. 15. (1 August 2007), pp. 5445-5455.
    by Elizabeth M Tank, David A Harris, Amar A Desai, Heather L True
    posted to mutants prp prpsc yeast by yunpeic on 2007-11-09 23:37:41 as **
  • Life with 6000 genes.
    Science, Vol. 274, No. 5287. (25 October 1996)
    by A Goffeau, BG Barrell, H Bussey, RW Davis, B Dujon, H Feldmann, F Galibert, JD Hoheisel, C Jacq, M Johnston, EJ Louis, HW Mewes, Y Murakami, P Philippsen, H Tettelin, SG Oliver
    posted to genome yeast by yulian2108 on 2007-09-02 20:02:45 as * along with 6 people farhat sdinka Cortel rebeccahainess arcticrasta treangen
  • notes Cloning and expression of a biologically active Anisakis simplex allergen Ani s 1 in the yeast Pichia pastoris.
    Mol Biochem Parasitol, Vol. 154, No. 1. (July 2007), pp. 115-118.
    by R Rodriguez-Perez, ML Caballero, M Gonzalez-Munoz, A Rodriguez-Mahillo, I Moneo
    posted to allergen allergy anisakis expression kdid0234 yeast by Yukihiro on 2008-02-13 16:40:45 as read
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