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Tag transcriptional_regulation [57 articles]

Recent papers classified by the tag transcriptional_regulation.
  • Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis
    Nucl. Acids Res. (16 March 2008), gkn123.
    by Christoph Jochl, Mathieu Rederstorff, Jana Hertel, Peter F Stadler, Ivo L Hofacker, Markus Schrettl, Hubertus Haas, Alexander Huttenhofer
    posted to aspergillus fungi gene_silencing noncoding_rna transcriptional_regulation by stajich on 2008-04-01 00:55:01 as ** along with 1 person and 1 group cellison Berkeley Mycology
  • Reprogramming a maize plant: Transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis.
    The Plant journal : for cell and molecular biology (18 June 2008)
    by Gunther Doehlemann, Ramon Wahl, Robin J J Horst, Lars M M Voll, Björn Usadel, Fabien Poree, Mark Stitt, Jörn Pons-Kühnemann, Uwe Sonnewald, Regine Kahmann, Jörg Kämper
    posted to ustilago transcriptional_regulation plantpathogen maize by stajich on 2008-06-26 08:04:59 as ** along with 1 person and 1 group bcondon Berkeley Mycology
  • Temperature-induced switch to the pathogenic yeast form of Histoplasma capsulatum requires Ryp1, a conserved transcriptional regulator
    Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4880-4885.
    by Van Q Nguyen, Anita Sil
    posted to transcriptional_regulation histoplasma dimorphism by stajich on 2008-04-27 21:41:52 as ** along with 1 group Berkeley Mycology
  • Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs.
    The Plant cell, Vol. 19, No. 11. (November 2007), pp. 3437-3450.
    by A Wachter, M Tunc-Ozdemir, BC Grove, PJ Green, DK Shintani, RR Breaker
    posted to gene_expression plant riboswitch splicing transcriptional_regulation by stajich on 2008-04-10 05:54:13 as ** along with 1 group Berkeley Mycology
  • Transcriptional regulatory networks in Saccharomyces cerevisiae.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804.
    by TI Lee, NJ Rinaldi, F Robert, DT Odom, Z Bar-Joseph, GK Gerber, NM Hannett, CT Harbison, CM Thompson, I Simon, J Zeitlinger, EG Jennings, HL Murray, DB Gordon, B Ren, JJ Wyrick, JB Tagne, TL Volkert, E Fraenkel, DK Gifford, RA Young
    posted to bivoc chip genomics network networks no-tag thesis transcriptional_regulation yeast by samal on 2006-08-11 09:59:21 as ** along with 24 people and 2 groups Takayuki Borelli kristallreiner brant camster snuppepuppan icases forluvoft ggrot alokm opheliav sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 roys njcitulike dbk-lab TNT
  • A bottom-up approach to gene regulation
    Nature, Vol. 439, No. 7078. (16 February 2006), pp. 856-860.
    by Nicholas J Guido, Xiao Wang, David Adalsteinsson, David Mcmillen, Jeff Hasty, Charles R Cantor, Timothy C Elston, JJ Collins
    posted to collins collins_lab development evolution expression gene gene-expression gene_expression molecular-signaling morphogenesis networks noise regulation regulatory-cascades transcription transcriptional_regulation by samal on 2006-08-11 09:14:59 as ** along with 14 people and 2 groups tmmurali rklancer snuppepuppan jyuh okarsligil bayesian balicea madhadron balabu johncumbers mmt proulx dbikard nklee Bioinformatics SynBioSys
  • Stimulus-dependent differential regulation in the Escherichia coli PhoQ PhoP system
    Proceedings of the National Academy of Sciences, Vol. 104, No. 41. (9 October 2007), pp. 16305-16310.
    by Tim Miyashiro, Mark Goulian
    posted to e_coli gene_expression gene_regulation transcriptional_regulation two-component_system by jjray on 2008-03-26 22:00:05 as read
  • Implementing arithmetic and other analytic operations by transcriptional regulation.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by SM Cory, TJ Perkins
    posted to transcriptional_regulation synthetic_biology by jjray on 2008-06-02 21:29:10 as ** along with 4 people and 1 group dbikard eskay dquest maximilianh SynBioSys
  • Functional organisation of Escherichia coli transcriptional regulatory network
    Journal of Molecular Biology, Vol. 381, No. 1. (1 August 2008), pp. 238-247.
    by Agustino Martínez-Antonio, Sarath C Janga, Denis Thieffry
    posted to transcriptional_regulation positive_feedback global_regulator feedback e_coli bacteria by jjray on 2008-07-11 17:13:23 as ** along with 1 person maralena
  • Transcription attenuation: a highly conserved regulatory strategy used by bacteria.
    Trends Genet, Vol. 21, No. 5. (May 2005), pp. 260-264.
    by E Merino, C Yanofsky
    posted to transcriptional_regulation transcriptional_attentuation by jjray on 2008-06-04 21:52:45 as ** along with 1 person Cortel
  • Ultrasensitive gene regulation by positive feedback loops in nucleosome modification
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Kim Sneppen, Mille A Micheelsen, Ian B Dodd
    posted to transcriptional_regulation sensitivity promoter positive_feedback mathematical_model feedback eukaryote bistability by jjray on 2008-05-06 22:22:22 as **
  • A synthetic oscillatory network of transcriptional regulators.
    Nature, Vol. 403, No. 6767. (20 January 2000), pp. 335-338.
    by MB Elowitz, S Leibler
    posted to transcriptional_regulation synthetic_biology repressilator by jjray on 2008-07-14 17:19:21 as ** along with 9 people austin tvdbulck msuarezdiez rklancer dgront sharatjv mhucka margaritis Grobi
  • Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
    Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117.
    by Xi Chen, Han Xu, Ping Yuan, Fang Fang, Mikael Huss, Vinsensius B Vega, Eleanor Wong, Yuriy L Orlov, Weiwei Zhang, Jianming Jiang, Yuin-Han Loh, Hock C Yeo, Zhen X Yeo, Vipin Narang, Kunde R Govindarajan, Bernard Leong, Atif Shahab, Yijun Ruan, Guillaume Bourque, Wing-Kin Sung, Neil D Clarke, Chia-Lin Wei, Huck-Hui Ng
    posted to transcriptional_regulation network gene_regulation es_cell by jjray on 2008-06-13 19:29:49 as ** along with 3 people inesdesantiago kengg caseybrown
  • Kinetic Partitioning Between Alternative Protein-Protein Interactions Controls a Transcriptional Switch
    Journal of Molecular Biology, Vol. 380, No. 1. (27 June 2008), pp. 223-236.
    by Huaying Zhao, Dorothy Beckett
    posted to transcriptional_regulation kinetics e_coli biophysics bacteria by jjray on 2008-06-10 21:44:42 as **
  • A Bacterial Cell-Cycle Regulatory Network Operating in Time and Space
    Science, Vol. 301, No. 5641. (26 September 2003), pp. 1874-1877.
    by Harley H Mcadams, Lucy Shapiro
    posted to transcriptional_regulation network mathematical_model just-in-time bacteria by jjray on 2008-07-10 18:23:52 as ** along with 6 people and 1 group balajis nickluscombe comb lshaw fishtank dylan77 EBI-regulation
  • Crosstalk between bacterial chemotaxis signal transduction proteins and regulators of transcription of the Ntr regulon: evidence that nitrogen assimilation and chemotaxis are controlled by a common phosphotransfer mechanism.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 85, No. 15. (August 1988), pp. 5492-5496.
    by AJ Ninfa, EG Ninfa, AN Lupas, A Stock, B Magasanik, J Stock
    posted to two-component_system transcriptional_regulation phosphorylation crosstalk chemotaxis bacteria by jjray on 2008-06-23 20:02:54 as read
  • Are DNA Transcription Factor Proteins Maxwellian Demons?
    Biophys. J., Vol. 95, No. 3. (1 August 2008), pp. 1151-1156.
    by Longhua Hu, Alexander Y Grosberg, Robijn Bruinsma
    posted to transcriptional_regulation thermodynamics mathematical_model biophysics by jjray on 2008-07-21 23:02:47 as **
  • Ab initio thermodynamic modeling of distal multisite transcription regulation.
    Nucleic Acids Res, Vol. 36, No. 3. (February 2008), pp. 726-731.
    by L Saiz, JM Vilar
    posted to transcriptional_regulation transcription thermodynamics mathematical_model biophysics bacteria by jjray on 2008-03-14 17:29:29 as read along with 1 person maximilianh
  • Bicoid determines sharp and precise target gene expression in the Drosophila embryo.
    Curr Biol, Vol. 15, No. 21. (8 November 2005), pp. 1888-1898.
    by O Crauk, N Dostatni
    posted to drosophila even-skipped_enhancer transcriptional_regulation by emptyhb on 2008-04-10 00:52:18 as ** along with 4 people and 1 group imouthesmp mystery indigoviolet balicea EisenLab
  • Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage
    Science, Vol. 309, No. 5736. (05 August 2005), pp. 938-940.
    by Jan Ihmels, Sven Bergmann, Maryam Gerami-Nejad, Itai Yanai, Mark Mcclellan, Judith Berman, Naama Barkai
    posted to cis_regulatory_evolution species_divergence transcriptional_regulation by emptyhb on 2008-04-05 19:55:05 as **** along with 7 people and 3 groups aalibes monod arve marcius adepace entropy janek04 EisenLab BioinfoCIPF SGU-CIPF
  • Stalled polymerases and transcriptional regulation
    Nature Genetics, Vol. 39, No. 12., pp. 1421-1422.
    by John W Tamkun
    posted to basic_cell_machinary news transcriptional_regulation by emptyhb on 2007-12-21 16:14:47 as ** along with 4 people cassj dchughes cjeans rschulz
  • Control of stochasticity in eukaryotic gene expression.
    Science, Vol. 304, No. 5678. (18 June 2004), pp. 1811-1814.
    by JM Raser, EK O'Shea
    posted to cis_regulatory_elements noiserobustness transcriptional_regulation by emptyhb on 2008-04-10 00:49:19 as ** along with 5 people rklancer madhadron balabu mhucka margaritis
  • The Evolution of Transcriptional Regulation in Eukaryotes
    Mol Biol Evol, Vol. 20, No. 9. (1 September 2003), pp. 1377-1419.
    by Gregory A Wray, Matthew W Hahn, Ehab Abouheif, James P Balhoff, Margaret Pizer, Matthew V Rockman, Laura A Romano
    posted to transcriptional_regulation review cis_regulatory_evolution by emptyhb on 2008-05-04 02:31:57 as ** along with 7 people and 5 groups ana dpollard adepace nickluscombe anatiferous mimulus_99 cisevol structural_bioinformatics Bioinformatics EisenLab EBI-regulation cis-regulatory-evolution
  • Chromatin decouples promoter threshold from dynamic range
    Nature (16 April 2008)
    by Felix H Lam, David J Steger, Erin K O’shea
    posted to transcriptional_regulation experimental_method epigenetics basic_cell_machinary by emptyhb on 2008-05-03 15:36:45 as ** along with 1 person jjray
  • Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors.
    Genome Res (5 July 2007)
    by Daryi Wang, Huang-Mo M Sung, Tzi-Yuan Y Wang, Chih-Jen J Huang, Peggy Yang, Tiffany Chang, Yang-Chao C Wang, Da-Lun L Tseng, Jen-Pey P Wu, Tso-Ching C Lee, Ming-Che C Shih, Wen-Hsiung H Li
    posted to transcriptional_regulation expression by emptyhb on 2008-05-10 21:56:58 as ** along with 4 people and 3 groups dpollard jwestbrook emarker cisevol EisenLab King_Lab cis-regulatory-evolution
  • The evolution of transcription-initiation sites.
    Mol Biol Evol, Vol. 22, No. 4. (April 2005), pp. 1137-1146.
    by M Lynch, DG Scofield, X Hong
    posted to transcriptional_regulation cis_regulatory_evolution by emptyhb on 2008-06-04 00:30:07 as ** along with 1 person madhadron
  • Regulation of even-skipped stripe 2 in the Drosophila embryo.
    The EMBO journal, Vol. 11, No. 11. (November 1992), pp. 4047-4057.
    by S Small, A Blair, M Levine
    posted to transcriptional_regulation even-skipped_enhancer drosophila by emptyhb on 2008-05-16 01:07:25 as ** along with 1 person brant
  • Information display by transcriptional enhancers
    Development, Vol. 130, No. 26. (29 December 2003), pp. 6569-6575.
    by Meghana M Kulkarni, David N Arnosti
    posted to transcriptional_regulation even-skipped_enhancer drosophila by emptyhb on 2008-07-02 22:44:25 as **
  • The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans
    Nature Genetics, Vol. 37, No. 5. (24 April 2005), pp. 544-548.
    by Dee R Denver, Krystalynne Morris, Todd T Streelman, Stuart K Kim, Michael Lynch, Kelley K Thomas
    posted to transcriptional_regulation natural_selection cis_regulatory_evolution by emptyhb on 2008-06-04 00:29:45 as ** along with 2 people rklancer mimulus_99
  • The interplay between the master transcription factor PU.1 and miR-424 regulates human monocyte/macrophage differentiation.
    Proc Natl Acad Sci U S A, Vol. 104, No. 50. (11 December 2007), pp. 19849-19854.
    by A Rosa, M Ballarino, A Sorrentino, O Sthandier, FG De Angelis, M Marchioni, B Masella, A Guarini, A Fatica, C Peschle, I Bozzoni
    posted to mirna transcriptional_regulation by emptyhb on 2008-01-15 15:06:59 as ** along with 1 person bootsy
  • Short-range repression permits multiple enhancers to function autonomously within a complex promoter.
    Genes Dev., Vol. 8, No. 15. (1 August 1994), pp. 1829-1838.
    by S Gray, P Szymanski, M Levine
    posted to dna-protein_interaction drosophila even-skipped_enhancer pattern_formation transcriptional_regulation by emptyhb on 2008-02-28 17:42:19 as **
  • Common pattern of evolution of gene expression level and protein sequence in Drosophila.
    Mol Biol Evol, Vol. 21, No. 7. (July 2004), pp. 1308-1317.
    by SV Nuzhdin, ML Wayne, KL Harmon, LM McIntyre
    posted to drosophila species_divergence transcriptional_regulation by emptyhb on 2008-01-22 15:40:03 as ** along with 3 people and 1 group bjorns RMGraze penka Nie
  • Genetic Properties Influencing the Evolvability of Gene Expression.
    Science (24 May 2007)
    by Christian R R Landry, Bernardo Lemos, Scott A A Rifkin, W J J Dickinson, Daniel L L Hartl
    posted to expression transcriptional_regulation by emptyhb on 2008-01-28 05:12:53 as ** along with 10 people and 3 groups klo jjray brant balicea sebastien_vigneau grahamc emarker heliopais cisevol caseybrown EisenLab ParkinsonLab_at_MaRS cis-regulatory-evolution
  • Coordination of a Transcriptional Switch by HMGI(Y) Acetylation
    Science, Vol. 293, No. 5532. (10 August 2001), pp. 1133-1136.
    by Nikhil Munshi, Theodora Agalioti, Stavros Lomvardas, Menie Merika, Guoying Chen, Dimitris Thanos
    posted to transcriptional_regulation dna-protein_interaction cis_regulatory_evolution by emptyhb on 2008-07-03 23:30:10 as **
  • Functional characterization of variations on regulatory motifs.
    PLoS genetics, Vol. 4, No. 3. (March 2008)
    by L Michal, O Mizrahi-Man, Y Pilpel
    posted to transcriptional_regulation modeling_gene_network by emptyhb on 2008-05-02 04:10:47 as ** along with 1 person ihpark
  • An Atomic Model of the Interferon-[beta] Enhanceosome
    Cell, Vol. 129, No. 6. (15 June 2007), pp. 1111-1123.
    by Daniel Panne, Tom Maniatis, Stephen C Harrison
    posted to transcriptional_regulation dna-protein_interaction cis_regulatory_evolution by emptyhb on 2008-07-03 23:26:56 as **
  • Transcriptional Control in the Segmentation Gene Network of Drosophila
    PLoS Biology, Vol. 2, No. 9. (1 September 2004), e271.
    by Mark D Schroeder, Michael Pearce, John Fak, Hongqing Fan, Ulrich Unnerstall, Eldon Emberly, Nikolaus Rajewsky, Eric D Siggia, Ulrike Gaul
    posted to cis_regulatory_elements drosophila motif_searching pattern_formation transcriptional_regulation by emptyhb on 2008-01-19 22:49:02 as **** along with 5 people and 3 groups indigoviolet dpollard adepace wrowell dlmace EisenLab Cline_lab UH - Computational Biology
  • Evaluating the role of natural selection in the evolution of gene regulation
    Heredity, Vol. aop, No. current.
    by JC Fay, PJ Wittkopp
    posted to cis_regulatory_elements detecting_selection review transcriptional_regulation by emptyhb on 2007-12-31 18:07:55 as **** along with 4 people and 2 groups gjuggler dpollard djkt cisevol EisenLab cis-regulatory-evolution
  • A matter of timing: microRNA-controlled temporal identities in worms and flies
    Genes Dev., Vol. 22, No. 12. (15 June 2008), pp. 1572-1576.
    by Manfred Frasch
    posted to transcriptional_regulation mirna by emptyhb on 2008-06-29 20:01:30 as ** along with 1 person balicea
  • Short-range transcriptional repressors mediate both quenching and direct repression within complex loci in Drosophila.
    Genes Dev., Vol. 10, No. 6. (15 March 1996), pp. 700-710.
    by S Gray, M Levine
    posted to drosophila transcriptional_regulation by emptyhb on 2008-02-29 15:55:38 as **
  • Evolution of alternative transcriptional circuits with identical logic
    Nature, Vol. 443, No. 7110. (2006), pp. 415-420.
    by Annie E Tsong, Brian B Tuch, Hao Li, Alexander D Johnson
    posted to transcriptional_regulation cis_regulatory_evolution by emptyhb on 2008-05-14 20:24:06 as ** along with 6 people and 4 groups marcius brant adepace aswin srfairclough cisevol EisenLab BioinfoCIPF SGU-CIPF cis-regulatory-evolution
  • Two strategies for gene regulation by promoter nucleosomes
    Genome Res. (30 April 2008), gr.076059.108.
    by Itay Tirosh, Naama Barkai
    posted to transcriptional_regulation epigenetics by emptyhb on 2008-05-22 06:43:50 as ** along with 8 people inesdesantiago dchughes aalibes djkt fpattyn vega roys nklee
  • Explicit equilibrium modeling of transcription-factor binding and gene regulation.
    Genome biology, Vol. 6, No. 10. (2005)
    by JA Granek, ND Clarke
    posted to transcriptional_regulation by emptyhb on 2008-06-29 03:17:40 as **
  • Gene Regulation in the Third Dimension
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1793-1794.
    by Job Dekker
    posted to transcriptional_regulation by emptyhb on 2008-05-04 21:35:40 as ** along with 10 people and 2 groups inesdesantiago ArtemPankin operon AbnerCYH ealloza biomcgary sunhwan dlobo lambda Haze Khavkin's lab GEB
  • Multilevel Regulation of Gene Expression by MicroRNAs
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1789-1790.
    by Eugene V Makeyev, Tom Maniatis
    posted to mirna transcriptional_regulation by emptyhb on 2008-04-01 07:19:27 as ** along with 3 people and 1 group giovenko ealloza heliopais microRNA
  • Gene Regulation by Transcription Factors and MicroRNAs
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1785-1786.
    by Oliver Hobert
    posted to mirna review transcriptional_regulation by emptyhb on 2008-04-01 07:19:00 as **** along with 7 people and 1 group siebert bootsy ealloza zwang biomcgary heliopais maralena microRNA
  • Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression
    Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560.
    by Christopher D Brown, David S Johnson, Arend Sidow
    posted to transcriptional_regulation cis_regulatory_evolution by emptyhb on 2008-07-04 17:41:06 as ** along with 9 people and 2 groups dpollard djkt joepickrell zwang Garamonfok Stew mimulus_99 maximilianh cisevol EisenLab cis-regulatory-evolution
  • Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1643-1647.
    by Rickard Sandberg, Joel R Neilson, Arup Sarma, Phillip A Sharp, Christopher B Burge
    posted to transcriptional_regulation mirna by emptyhb on 2008-06-29 19:31:58 as ** along with 5 people faion dchughes bootsy lisa1 djkt
  • Analysis and function of transcriptional regulatory elements: insights from Drosophila.
    Annu Rev Entomol, Vol. 48 (2003), pp. 579-602.
    by DN Arnosti
    posted to drosophila gene_regulation regulatory_elements review transcription transcriptional_regulation by emmahe on 2008-01-18 17:02:35 as ** along with 1 person and 1 group adepace EisenLab
  • The MODY1 gene HNF-4alpha regulates selected genes involved in insulin secretion.
    J Clin Invest, Vol. 115, No. 4. (April 2005), pp. 1006-1015.
    by RK Gupta, MZ Vatamaniuk, CS Lee, RC Flaschen, JT Fulmer, FM Matschinsky, SA Duncan, KH Kaestner
    posted to beta_cell transcriptional_regulation by cconboy on 2006-07-14 14:40:50 as *****
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