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Tag tfnets [12 articles]

Recent papers classified by the tag tfnets.
  • Probabilistic discovery of overlapping cellular processes and their regulation.
    J Comput Biol, Vol. 12, No. 7. (September 2005), pp. 909-927.
    by A Battle, E Segal, D Koller
    posted to tfnets transcription_modules by roys on 2007-11-06 03:18:58 as ** along with 3 people ptrobajo nirfriedman srp33
  • Predicting Gene Expression from Sequence
    Cell, Vol. 117, No. 2. (16 April 2004), pp. 185-198.
    by Michael A Beer, Saeed Tavazoie
    posted to tfnets by roys on 2008-03-22 17:59:43 as **
  • Regulatory Module Network of bHLH Transcription Factors in Mouse Brain
    Genome Biology, Vol. 8 (19 November 2007), R244.
    by Jing Li, Zijing Liu, Yuchun Pan, Qi Liu, Xing Fu, Nigel GF Cooper, Yixue Li, Mengsheng Qiu, Tieliu Shi
    posted to module_nw regnet tfnets by roys on 2008-02-06 17:10:58 as ** along with 2 people cjeans fpattyn
  • Characterizing disease states from topological properties of transcriptional regulatory networks.
    BMC Bioinformatics, Vol. 7 (2006)
    by DP Tuck, HM Kluger, Y Kluger
    posted to cancer condition_specific_nw tfnets tra transcription_modules by roys on 2007-11-06 04:08:37 as ** along with 1 person jfr
  • Transcriptional regulatory networks in Saccharomyces cerevisiae.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804.
    by TI Lee, NJ Rinaldi, F Robert, DT Odom, Z Bar-Joseph, GK Gerber, NM Hannett, CT Harbison, CM Thompson, I Simon, J Zeitlinger, EG Jennings, HL Murray, DB Gordon, B Ren, JJ Wyrick, JB Tagne, TL Volkert, E Fraenkel, DK Gifford, RA Young
    posted to network_motifs tfnets by roys on 2007-11-06 18:33:57 as ** along with 27 people and 2 groups lillo80 camster snuppepuppan icases forluvoft ggrot alokm opheliav samal sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 njcitulike brant kristallreiner Borelli Takayuki dquest siebert dbk-lab TNT
  • Predicting expression patterns from regulatory sequence in Drosophila segmentation
    Nature (02 January 2008)
    by Eran Segal, Tali Raveh-Sadka, Mark Schroeder, Ulrich Unnerstall, Ulrike Gaul
    posted to fly tfnets by roys on 2008-03-22 18:05:22 as ** along with 15 people ptrobajo isimpson dakelley tmmurali eckart_bindewald djkt bootsy biomcgary idonaldson emptyhb pkharchenko meiklej jrest tresch siebert
  • Computational discovery of gene modules and regulatory networks.
    Nat Biotechnol, Vol. 21, No. 11. (November 2003), pp. 1337-1342.
    by Z Bar-Joseph, GK Gerber, TI Lee, NJ Rinaldi, JY Yoo, F Robert, DB Gordon, E Fraenkel, TS Jaakkola, RA Young, DK Gifford
    posted to tfnets tfprograms transcription_modules by roys on 2007-11-06 03:13:32 as ** along with 12 people and 1 group ggrot dragonrez bayesian wnpx nickluscombe koller frohike karfunkel dquest balicea carlk tvdbulck EBI-regulation
  • Context-dependent clustering for dynamic cellular state modeling of microarray gene expression
    Bioinformatics, Vol. 23, No. 22. (15 November 2007), pp. 3039-3047.
    by Shinsheng Yuan, Ker-Chau Li
    posted to context_sensitive nw regulatory tfnets by roys on 2007-11-19 16:22:10 as **
  • Modeling the combinatorial functions of multiple transcription factors.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 463-480.
    by CH Yeang, T Jaakkola
    posted to combinatorial_control protein-dna_interaction_prediction tfnets by roys on 2008-03-22 18:12:34 as ** along with 1 person and 1 group cdppublications CDP
  • High-resolution analysis of condition-specific regulatory modules in Saccharomyces cerevisiae
    Genome Biology, Vol. 9 (03 January 2008), R2.
    by Hun-Goo Lee, Hyo-Soo Lee, Sang-Hoon Jeon, Tae-Hoon Chung, Young-Sung Lim, Won-Ki Huh
    posted to condition_specific_nw condition_specific_response tfnets by roys on 2008-01-11 06:24:36 as ** along with 3 people lusk ptrobajo maximilianh
  • Coevolutionary networks of splicing cis-regulatory elements
    Proceedings of the National Academy of Sciences (12 November 2007), 0707349104.
    by Xinshu Xiao, Zefeng Wang, Minyoung Jang, Christopher B Burge
    posted to bayesian_networks tfnets tfprograms transcription_modules by roys on 2007-11-14 06:01:21 as ** along with 2 people cjeans oelemento
  • Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.
    Nat Genet, Vol. 34, No. 2. (June 2003), pp. 166-176.
    by E Segal, M Shapira, A Regev, D Pe'er, D Botstein, D Koller, N Friedman
    posted to tfnets transcription_modules by roys on 2007-11-06 03:15:43 as ** along with 18 people and 1 group cswinburne ggallone ealloza orzenil tuck bayesian wnpx tabu koller olympos fishtank dimatura karfunkel pkm dragonrez tvdbulck chrisamiller aviad_work Jarman Lab
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