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Tag retrotransposon [70 articles]

Recent papers classified by the tag retrotransposon.
  • Widespread Intron Loss Suggests Retrotransposon Activity in Ancient Apicomplexans
    Mol Biol Evol (23 May 2007), msm102.
    by Scott W Roy, David Penny
    posted to apicomplexia intron intron_loss retrotransposon by stajich on 2007-05-29 16:25:17 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Host Factors That Control Long Terminal Repeat Retrotransposons in Saccharomyces cerevisiae: Implications for Regulation of Mammalian Retroviruses
    Eukaryotic Cell, Vol. 6, No. 7. (1 July 2007), pp. 1069-1080.
    by Patrick H Maxwell, Joan M Curcio
    posted to ltr repeats retrotransposon saccharomyces transposable_elements transposon by stajich on 2008-04-19 17:34:03 as ** along with 1 group Berkeley Mycology
  • Emergence of primate genes by retrotransposon-mediated sequence transduction.
    Proc Natl Acad Sci U S A, Vol. 103, No. 47. (21 November 2006), pp. 17608-17613.
    by J Xing, H Wang, VP Belancio, R Cordaux, PL Deininger, MA Batzer
    posted to retrotransposon primate jc by srfairclough on 2007-01-19 15:59:11 as ** along with 1 person syoung11
  • Host genome surveillance for retrotransposons by transposon-derived proteins
    Nature (19 December 2007)
    by Hugh P Cam, Ken-Ichi Noma, Hirotaka Ebina, Henry L Levin, Shiv IS Grewal
    posted to retrotransposon transposon by sebastien_vigneau on 2008-01-27 13:20:33 as ***** along with 7 people and 1 group operon timflutre stajich biomcgary rschulz karfunkel bpcusack Berkeley Mycology
  • Molecular Landscape of Modified Histones in Drosophila Heterochromatic Genes and Euchromatin-Heterochromatin Transition Zones.
    PLoS Genet, Vol. 4, No. 1. (18 January 2008)
    by Jiro C C Yasuhara, Barbara T T Wakimoto
    posted to h3k9me2 heterochromatin repeat retrotransposon translocation by sebastien_vigneau on 2008-01-27 15:12:43 as **** along with 2 people timflutre meiklej
  • Human-specific endogenous retroviruses.
    ScientificWorldJournal, Vol. 7 (2007), pp. 1848-1868.
    by A Buzdin
    posted to database endogenous herv human intron retrotransposon retrovirus by rschulz on 2007-12-10 08:20:36 as *** along with 1 person clearbluespring
  • The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA
    Nature (11 November 2007)
    by Jafar Sharif, Masahiro Muto, Shin-Ichiro Takebayashi, Isao Suetake, Akihiro Iwamatsu, Takaho A Endo, Jun Shinga, Yoko Mizutani-Koseki, Tetsuro Toyoda, Kunihiro Okamura, Shoji Tajima, Kohzoh Mitsuya, Masaki Okano, Haruhiko Koseki
    posted to dna dnmt1 dnmt3a dnmt3b epigenetics iap imprinting inheritance line methylation np95 retrotransposon silencing sine by rschulz on 2007-12-13 09:51:43 as read along with 1 person epigenetics
  • Genome-wide tracking of unmethylated DNA Alu repeats in normal and cancer cells.
    Nucleic Acids Res (15 December 2007)
    by Jairo Rodriguez, Laura Vives, Mireia Jordà, Cristina Morales, Mar Muñoz, Elisenda Vendrell, Miguel A A Peinado
    posted to alu cancer dna human methylation repeat retrotransposition retrotransposon survey by rschulz on 2007-12-19 08:19:43 as ** along with 2 people renatomilani FMoncini
  • Meiotic and epigenetic aberrations in Dnmt3L-deficient male germ cells.
    Mol Reprod Dev, Vol. 73, No. 1. (January 2006), pp. 116-122.
    by K Hata, M Kusumi, T Yokomine, E Li, H Sasaki
    posted to cell dnmt3l epigenetics germ iap male methylation retrotransposon sperm by rschulz on 2007-12-03 14:44:15 as read
  • Meiotic and epigenetic defects in Dnmt3L-knockout mouse spermatogenesis.
    Proc Natl Acad Sci U S A, Vol. 102, No. 11. (15 March 2005), pp. 4068-4073.
    by KE Webster, MK O'Bryan, S Fletcher, PE Crewther, U Aapola, J Craig, DK Harrison, H Aung, N Phutikanit, R Lyle, SJ Meachem, SE Antonarakis, DM de Kretser, MP Hedger, P Peterson, BJ Carroll, HS Scott
    posted to cell dnmt3l epigenetics germ imprinting line ltr male methylation paternal retrotransposon sine sperm by rschulz on 2007-12-03 14:40:42 as read
  • Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L.
    Nature, Vol. 431, No. 7004. (2 September 2004), pp. 96-99.
    by D Bourc'his, TH Bestor
    posted to cell dnmt3l epigenetics germ iap line ltr male methylation retrotransposon sperm by rschulz on 2007-12-03 14:35:28 as read
  • Epigenetic interactions between transposons and genes: lessons from plants.
    Curr Opin Genet Dev (11 March 2008)
    by Cliff Weil, Rob Martienssen
    posted to epigenetics plant retrotransposition retrotransposon review transposon by rschulz on 2008-03-17 08:37:14 as **
  • Transposable elements and the epigenetic regulation of the genome
    Nature Reviews Genetics, Vol. 8, No. 4., pp. 272-285.
    by Keith R Slotkin, Robert Martienssen
    posted to dna-methylation epigenetics retrotransposition retrotransposon review silencing transposition transposon by rschulz on 2008-02-25 08:34:42 as ** along with 3 people and 2 groups dchughes dandaman timflutre G4ID Genetics-of-Gambling
  • Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3'-end of genes.
    Nucleic acids research (30 August 2008)
    by Ju Youn Y Lee, Zhe Ji, Bin Tian
    posted to retrotransposon retrotransposition polyadenylation evolution alternative by rschulz on 2008-09-03 16:16:02 as **
  • A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.
    Hum Genet, Vol. 117, No. 5. (September 2005), pp. 411-427.
    by JM Chen, PD Stenson, DN Cooper, C Férec
    posted to endonuclease l1 retrotransposon review tsd by rschulz on 2008-04-11 12:30:06 as ** along with 2 people aprasad clearbluespring
  • Analysis of the role of retrotransposition in gene evolution in vertebrates
    BMC Bioinformatics, Vol. 8 (24 August 2007), 308.
    by Zhan Yu, David Morais, Mahine Ivanga, Paul M Harrison
    posted to bioinformatics evolution retrotransposon by renatomilani on 2008-06-18 20:35:53 as ** along with 1 person shoshin
  • Imprinted microRNA genes transcribed antisense to a reciprocally imprinted retrotransposon-like gene.
    Nat Genet, Vol. 34, No. 3. (July 2003), pp. 261-262.
    by H Seitz, N Youngson, SP Lin, S Dalbert, M Paulsen, JP Bachellerie, AC Ferguson-Smith, J Cavaillé
    posted to intron microrna retrotransposon transcription by maralena on 2008-02-21 08:54:56 as ** along with 2 people and 2 groups dchughes mtagaya G4ID Genetics-of-Gambling
  • Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome
    Genes Dev., Vol. 20, No. 16. (15 August 2006), pp. 2214-2222.
    by Kuniaki Saito, Kazumichi M Nishida, Tomoko Mori, Yoshinori Kawamura, Keita Miyoshi, Tomoko Nagami, Haruhiko Siomi, Mikiko C Siomi
    posted to retrotransposon rasirna piwi by hc12a26 on 2007-02-02 07:23:31 as **** along with 4 people tardigrade mtagaya jackjackjjj zhanghuiqiong
  • Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs).
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 828-838.
    by Y Ruan, HS Ooi, SW Choo, KP Chiu, XD Zhao, KG Srinivasan, F Yao, CY Choo, J Liu, P Ariyaratne, WG Bin, VA Kuznetsov, A Shahab, WK Sung, G Bourque, N Palanisamy, CL Wei
    posted to retrotransposon retrotransposition retrogene fusion-genes by dchughes to the group G4ID on 2007-09-17 13:10:32 as ** along with 4 people and 2 groups jyuh ghattem caseybrown jasonflannick Bioinformatics Genetics-of-Gambling
  • Evolutionary history of 7SL RNA-derived SINEs in Supraprimates.
    Trends Genet, Vol. 23, No. 4. (April 2007), pp. 158-161.
    by JO Kriegs, G Churakov, J Jurka, J Brosius, J Schmitz
    posted to sine retrotransposon retrotransposition primates by dchughes to the group G4ID on 2007-09-18 11:47:23 as ** along with 1 group Genetics-of-Gambling
  • A novel testis ubiquitin-binding protein gene arose by exon shuffling in hominoids
    Genome Res., Vol. 17, No. 8. (1 August 2007), pp. 1129-1138.
    by Daria V Babushok, Kazuhiko Ohshima, Eric M Ostertag, Xinsheng Chen, Yanfeng Wang, Prabhat K Mandal, Norihiro Okada, Charles S Abrams, Haig H Kazazian
    posted to retrotransposon retrotransposition exon-shuffling de-novo-gene-evolution by dchughes to the group G4ID on 2007-09-17 12:53:47 as ** along with 1 person and 1 group msomel Genetics-of-Gambling
  • Straightening out the LINEs: LINE-1 orthologous loci
    Genomics, Vol. 85, No. 2. (February 2005), pp. 201-207.
    by Huei J Ho, David A Ray, Abdel-Halim Salem, Jeremy S Myers, Mark A Batzer
    posted to retrotransposon retrotransposition molecular-phylogenetics line by dchughes to the group G4ID on 2007-09-10 12:57:50 as ** along with 1 group Genetics-of-Gambling
  • Acquisition of Endonuclease Specificity during Evolution of L1 Retrotransposon
    Mol Biol Evol, Vol. 24, No. 9. (1 September 2007), pp. 2009-2015.
    by Kenji Ichiyanagi, Hidenori Nishihara, David D Duvernell, Norihiro Okada
    posted to retrotransposon retrotransposition line l1 by dchughes to the group G4ID on 2007-09-03 12:45:55 as ** along with 1 group Genetics-of-Gambling
  • Specific chicken repeat 1 (CR1) retrotransposon insertion suggests phylogenetic affinity of rockfowls (genus Picathartes) to crows and ravens (Corvidae)
    Molecular Phylogenetics and Evolution, Vol. 43, No. 1. (April 2007), pp. 328-337.
    by Simone Treplin, Ralph Tiedemann
    posted to retrotransposon retrotransposition molecular-phylogenetics avian by dchughes to the group G4ID on 2007-09-18 11:25:44 as ** along with 1 group Genetics-of-Gambling
  • Transposable element fragments in protein-coding regions and their contributions to human functional proteins
    Gene, Vol. 401, No. 1-2. (15 October 2007), pp. 165-171.
    by Ming Wu, Li Li, Zhirong Sun
    posted to retrotransposon retrotransposition exonisation exaptation by dchughes to the group G4ID on 2007-09-05 11:10:55 as ** along with 4 people and 2 groups N0131826 idonaldson paulcartwright cisevol Genetics-of-Gambling BergmanLab
  • Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica
    Genome Res., Vol. 17, No. 7. (1 July 2007), pp. 992-1004.
    by Andrew J Gentles, Matthew J Wakefield, Oleksiy Kohany, Wanjun Gu, Mark A Batzer, David D Pollock, Jerzy Jurka
    posted to sine retrotransposon monodelphis-domestica marsupial-mammal marsupial erv by dchughes to the group G4ID on 2007-09-17 12:58:26 as ** along with 1 person and 1 group FMoncini Genetics-of-Gambling
  • Controlling elements are wild cards in the epigenomic deck.
    Proc Natl Acad Sci U S A (19 November 2007)
    by Jennifer E E Cropley, David I K I Martin
    posted to epigenomics retrotransposon by dchughes on 2007-11-29 13:30:48 as ** along with 2 people balicea sebastien_vigneau
  • Can ID Repetitive Elements Serve as Cis-acting Dendritic Targeting Elements? An In Vivo Study.
    PLoS ONE, Vol. 2, No. 9. (2007)
    by T Khanam, CA Raabe, M Kiefmann, S Handel, BV Skryabin, J Brosius
    posted to dendrio retrotransposon by dchughes on 2007-11-16 15:07:47 as **
  • Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: Galliformes)
    BMC Evolutionary Biology, Vol. 7 (09 October 2007), 190.
    by Jan O Kriegs, Andreas Matzke, Gennady Churakov, Andrej Kuritzin, Gerald Mayr, Juergen Brosius, Juergen Schmitz
    posted to avian molecular-phylogenetics retrotransposon by dchughes on 2007-11-16 15:02:49 as **
  • A unified classification system for eukaryotic transposable elements
    Nature Reviews Genetics, Vol. 8, No. 12., pp. 973-982.
    by Thomas Wicker, François Sabot, Aurélie Hua-Van, Jeffrey L Bennetzen, Pierre Capy, Boulos Chalhoub, Andrew Flavell, Philippe Leroy, Michele Morgante, Olivier Panaud, Etienne Paux, Phillip Sanmiguel, Alan H Schulman
    posted to retrotransposition retrotransposon transposon by dchughes on 2008-01-28 13:16:40 as ** along with 5 people and 1 group operon timflutre urgi ArtemPankin kiara Khavkin's lab
  • Fixation of conserved sequences shapes human intron size and influences transposon-insertion dynamics.
    Trends Genet, Vol. 21, No. 9. (September 2005), pp. 484-488.
    by M Sironi, G Menozzi, GP Comi, N Bresolin, R Cagliani, U Pozzoli
    posted to intron intron-size retrotransposition retrotransposon by dchughes on 2008-03-06 12:14:11 as ** along with 2 people and 1 group paulcartwright FMoncini BergmanLab
  • Retroposed Elements and Their Flanking Regions Resolve the Evolutionary History of Xenarthran Mammals (Armadillos, Anteaters, and Sloths)
    Mol Biol Evol, Vol. 24, No. 11. (1 November 2007), pp. 2573-2582.
    by Maren Moller-Krull, Frederic Delsuc, Gennady Churakov, Claudia Marker, Mariella Superina, Jurgen Brosius, Emmanuel J Douzery, Jurgen Schmitz
    posted to molecular-phylogenetics retrotransposon by dchughes on 2007-11-05 10:13:52 as **
  • Newly discovered young CORE-SINEs in marsupial genomes.
    Gene, Vol. 407, No. 1-2. (15 January 2008), pp. 176-185.
    by M Munemasa, M Nikaido, H Nishihara, S Donnellan, CC Austin, N Okada
    posted to core-sine marsupial retrotransposition retrotransposon sine by dchughes on 2008-08-11 14:02:54 as ** along with 1 person FMoncini
  • Alu and LINE1 Distributions in the Human Chromosomes: Evidence of Global Genomic Organization Expressed in the Form of Power Laws
    Mol Biol Evol, Vol. 24, No. 11. (1 November 2007), pp. 2385-2399.
    by Diamantis Sellis, Astero Provata, Yannis Almirantis
    posted to genome line retrotransposon sine by dchughes on 2007-11-05 10:17:47 as ** along with 1 person and 1 group cisevol BergmanLab
  • Insertion of an intracisternal A particle retrotransposon element in plasma membrane calcium ATPase 2 gene attenuates its expression and produces an ataxic phenotype in joggle mutant mice
    Gene, Vol. 411, No. 1-2. (31 March 2008), pp. 94-102.
    by Xiao-Yang Sun, Zi-Yan Chen, Yoshitaka Hayashi, Yasuhiko Kanou, Yoshiko Takagishi, Sen-Ichi Oda, Yoshiharu Murata
    posted to mutation retrotransposition retrotransposon by dchughes on 2008-02-29 12:53:05 as **
  • Transposable elements as drivers of genomic and biological diversity in vertebrates.
    Chromosome Res, Vol. 16, No. 1. (2008), pp. 203-215.
    by A Böhne, F Brunet, D Galiana-Arnoux, C Schultheis, JN Volff
    posted to retrotransposon transposon by dchughes on 2008-03-13 13:12:27 as ** along with 1 person and 1 group idonaldson BergmanLab
  • Stress Management: How Cells Take Control of Their Transposons
    Molecular Cell, Vol. 27, No. 2. (20 July 2007), pp. 180-181.
    by Hirotaka Ebina, Henry L Levin
    posted to chromatin retrotransposition retrotransposon by dchughes on 2007-10-18 17:18:23 as ** along with 1 person margaritis
  • The impact of multiple splice sites in human L1 elements
    Gene, Vol. 411, No. 1-2. (31 March 2008), pp. 38-45.
    by VP Belancio, AM Roy-Engel, P Deininger
    posted to l1 line retrotransposition retrotransposon splicing by dchughes on 2008-02-29 12:50:21 as ** along with 1 person and 1 group paulcartwright BergmanLab
  • Translation from nonautonomous type IAP retrotransposon is a critical determinant of transposition activity: Implication for retrotransposon-mediated genome evolution
    Genome Res., Vol. 18, No. 6. (1 June 2008), pp. 859-868.
    by Ei-Suke Saito, Vincent W Keng, Junji Takeda, Kyoji Horie
    posted to genome-evolution retrotransposon by dchughes on 2008-07-04 13:12:55 as **
  • A novel SINE family occurs frequently in both genomic DNA and transcribed sequences in ixodid ticks of the arthropod sub-phylum Chelicerata
    Gene, Vol. 415, No. 1-2. (31 May 2008), pp. 13-22.
    by Jack D Sunter, Sonal P Patel, Robert A Skilton, Naftaly Githaka, Donald P Knowles, Glen A Scoles, Vishvanath Nene, Etienne de Villiers, Richard P Bishop
    posted to sine retrotransposon by dchughes on 2008-09-15 10:05:33 as **
  • Human cis natural antisense transcripts initiated by transposable elements.
    Trends Genet (11 January 2008)
    by Andrew B B Conley, Wolfgang J J Miller, I King K Jordan
    posted to antisense retrotransposon by dchughes on 2008-03-05 12:57:39 as ** along with 6 people and 2 groups gpappas balicea sebastien_vigneau timflutre cisevol yoanjacquemin cis-regulatory-evolution BergmanLab
  • Repetitive sequences in complex genomes: structure and evolution.
    Annu Rev Genomics Hum Genet, Vol. 8 (2007), pp. 241-259.
    by J Jurka, VV Kapitonov, O Kohany, MV Jurka
    posted to repetitive retrotransposon sine by dchughes on 2007-11-26 14:53:34 as **
  • Mobile DNA elements in primate and human evolution
    American Journal of Physical Anthropology, Vol. 134, No. S45. (2007), pp. 2-19.
    by Jinchuan Xing, David J Witherspoon, David A Ray, Mark A Batzer, Lynn B Jorde
    posted to retrotransposon retrotransposition primates human-evolution evolution by dchughes on 2008-09-05 12:43:56 as ** along with 4 people and 1 group timflutre ryanraaum urgi pradiptaray BergmanLab
  • Do Alu repeats shape the primate transcriptome?
    Genome Biology, Vol. 9, No. 2. (2008)
    by Araxi Urrutia, Leandro B Ocana, Laurence Hurst
    posted to alu genome-evolution retrotransposition retrotransposon by dchughes on 2008-05-19 17:31:45 as ** along with 4 people and 2 groups djkt biomcgary cisevol bpcusack cis-regulatory-evolution BergmanLab
  • Conserved themes in small-RNA-mediated transposon control.
    Trends Cell Biol (16 February 2008)
    by Angélique Girard, Gregory J J Hannon
    posted to non-coding-rna retrotransposon rnai sirna by dchughes on 2008-03-06 12:29:46 as ** along with 1 person Alexander_Kanitz
  • Beyond DNA: RNA Editing and Steps Toward Alu Exonization in Primates
    Journal of Molecular Biology, Vol. 382, No. 3. (10 October 2008), pp. 601-609.
    by Maren Möller-Krull, Anja Zemann, Christian Roos, Jürgen Brosius, Jürgen Schmitz
    posted to rna-editing retrotransposon retrotransposition exonisation alu-exonisation alu by dchughes on 2008-09-16 15:42:38 as **
  • The contribution of RNAs and retroposition to evolutionary novelties.
    Genetica, Vol. 118, No. 2-3. (July 2003), pp. 99-116.
    by J Brosius
    posted to alu alu-exonisation mir retrotransposition retrotransposon by dchughes on 2008-01-22 13:51:45 as ** along with 1 person ushishir
  • Conserved eukaryotic transposable elements and the evolution of gene regulation.
    Cell Mol Life Sci (20 November 2007)
    by J Jurka
    posted to retrotransposon by dchughes on 2007-11-26 13:19:27 as ** along with 5 people and 2 groups gpappas Stew maximilianh cisevol idonaldson cis-regulatory-evolution BergmanLab
  • Origin and spread of the SRY gene on the X and Y chromosomes of the rodent Microtus cabrerae: Role of L1 elements
    Genomics, Vol. 91, No. 2. (February 2008), pp. 142-151.
    by Juan A Marchal, Manuel J Acosta, Monica Bullejos, de La, Antonio Sanchez
    posted to retrotransposon sex-determination sry by dchughes on 2008-01-24 12:34:49 as **
  • Biased distributions and decay of LINEs in the chicken genome
    Genetics (18 October 2007), genetics.106.061861.
    by Gyorgy Abrusan, Hans J Krambeck, Thomas Junier, Joti Giordano, Peter E Warburton
    posted to avian chicken-genomics line retrotransposon by dchughes on 2007-10-19 11:42:27 as ** along with 1 person aprasad
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