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Tag reads [13 articles]

Recent papers classified by the tag reads.
  • notes Life of Pi
    (01 May 2003)
    by Yann Martel
    posted to interesting reads by SethH on 2005-08-09 15:38:33 as ** along with 2 people and 1 group zephoria nbr digital_youth
  • De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.
    Genome Res (10 March 2008)
    by David Hernandez, Patrice Francois, Laurent Farinelli, Magne Osteras, Jacques Schrenzel
    posted to reads short by iris42 on 2008-04-01 15:31:44 as ** along with 7 people and 3 groups GustavoLacerda jmeppley stajich azazello Katje balicea Neeperando microbiology_nijmegen Berkeley Mycology gatech-compgenomics
  • Short read fragment assembly of bacterial genomes
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 324-330.
    by Mark J Chaisson, Pavel A Pevzner
    posted to reads short by iris42 on 2008-06-09 12:28:40 as ** along with 6 people orzenil azazello GustavoLacerda dandaman caseybrown tharris
  • Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by A Bashir, S Volik, C Collins, V Bafna, BJ Raphael
    posted to short reads paired-end by iris42 on 2008-10-09 01:36:46 as **** along with 2 people matthewsuderman vega
  • Velvet: Algorithms for De Novo Short Read Assembly Using De Bruijn Graphs
    Genome Res. (18 March 2008), gr.074492.107.
    by Daniel Zerbino, Ewan Birney
    posted to reads short by iris42 on 2008-06-09 12:31:49 as ** along with 9 people and 1 group natstreet nmohelli stajich farhat tharris Neeperando sharpton GustavoLacerda gdb Berkeley Mycology
  • Assembling millions of short DNA sequences using SSAKE
    Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 500-501.
    by Warren, L Rene, Sutton, G Granger, Jones, JM Steven, Holt, A Robert
    posted to reads short by iris42 on 2008-06-09 12:27:48 as ** along with 7 people caseybrown druvus natstreet azazello nmohelli Neeperando yoonk
  • Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data.
    Source code for biology and medicine, Vol. 3 (2008)
    by NJ Parker, AG Parker
    posted to reads short by iris42 on 2008-06-09 12:33:32 as ** along with 2 people orzenil GustavoLacerda
  • Probabilistic base calling of Solexa sequencing data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef
    posted to short reads by iris42 on 2008-11-13 09:37:39 as *** along with 9 people and 1 group malcook natstreet druvus abizar caseybrown reyez pengchy waszak nuin SIMR bioinformatics
  • Whole-genome sequencing and assembly with high-throughput, short-read technologies.
    PLoS ONE, Vol. 2 (2007)
    by A Sundquist, M Ronaghi, H Tang, P Pevzner, S Batzoglou
    posted to reads short by iris42 on 2008-06-09 12:26:10 as ** along with 5 people and 1 group GustavoLacerda orzenil guhjy azazello nedwards gatech-compgenomics
  • ALLPATHS: De novo assembly of whole-genome shotgun microreads.
    Genome Res (13 March 2008)
    by Jonathan Butler, Iain Maccallum, Michael Kleber, Ilya A A Shlyakhter, Matthew K K Belmonte, Eric S S Lander, Chad Nusbaum, David B B Jaffe
    posted to reads short by iris42 on 2008-06-09 12:26:56 as ** along with 9 people and 1 group stajich azazello hpaces tharris jwhitney Neeperando sharpton GustavoLacerda GeeSharpMinor Berkeley Mycology
  • Tracembler - software for in-silico chromosome walking in unassembled genomes
    BMC Bioinformatics, Vol. 8 (09 May 2007), 151.
    by Qunfeng Dong, Matthew D Wilkerson, Volker Brendel
    posted to reads short by iris42 on 2008-06-09 12:31:11 as ** along with 1 person APRegier
  • SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.
    Genome Res, Vol. 17, No. 11. (November 2007), pp. 1697-1706.
    by Juliane C C Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer
    posted to reads short by iris42 on 2008-06-09 12:25:22 as ** along with 10 people and 1 group nmohelli natstreet timflutre stajich ghattem azazello GustavoLacerda niallhaslam flexer jwhitney Berkeley Mycology
  • Metagenomics: Read length matters
    Appl. Environ. Microbiol. (11 January 2008), AEM.02181-07.
    by Eric K Wommack, Jaysheel Bhavsar, Jacques Ravel
    posted to reads short by alexisfjdufresne on 2008-04-24 16:47:12 as ** along with 10 people and 4 groups vaulot djkt jmeppley azazello kinestetika Thaverkamp skato_toyaku rvgomes alexl bluto Papers recommended by the Roscoff Plankton Group iSEEM Microbial-Ecology microbiology_nijmegen
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