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Tag quaternary-structure [29 articles]

Recent papers classified by the tag quaternary-structure.
  • PQS: a protein quaternary structure file server.
    Trends Biochem Sci, Vol. 23, No. 9. (September 1998), pp. 358-361.
    by K Henrick, JM Thornton
    posted to ppi-database quaternary-structure by bicko on 2005-10-21 10:19:02 as ** along with 1 person chad_davis
  • ProtBuD: a database of biological unit structures of protein families and superfamilies
    Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2876-2882.
    by Qifang Xu, Adrian Canutescu, Zoran Obradovic, Roland L Dunbrack
    posted to quaternary-structure ppi-database crystal-contacts by bicko on 2007-01-15 11:15:06 as read along with 1 person chad_davis
  • Predicting oligomeric assemblies: N-mers a primer
    Journal of Structural Biology, Vol. 150, No. 3. (June 2005), pp. 233-244.
    by Stephen R Comeau, Carlos J Camacho
    posted to docking-algorithm docking-symmetry quaternary-structure by bicko on 2005-10-17 10:53:08 as **
  • Conservation helps to identify biologically relevant crystal contacts.
    J Mol Biol, Vol. 313, No. 2. (19 October 2001), pp. 399-416.
    by WS Valdar, JM Thornton
    posted to crystal-contacts interface-properties ppi-evolution quaternary-structure by bicko on 2005-11-07 15:19:01 as ** along with 3 people cjeans Evangelia jwm
  • Structural symmetry and protein function.
    Annu Rev Biophys Biomol Struct, Vol. 29 (2000), pp. 105-153.
    by DS Goodsell, AJ Olson
    posted to review quaternary-structure by bicko on 2008-09-03 16:50:22 as ** along with 2 people viktor21614 cactus
  • Automatic inference of protein quaternary structure from crystals
    Journal of Applied Crystallography, Vol. 36, No. 5. (October 2003), pp. 1116-1122.
    by Ponstingl, , Kabir, , Thornton,
    posted to crystal-contacts quaternary-structure by bicko on 2008-08-12 18:26:12 as **
  • Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies.
    Phys Biol, Vol. 2, No. 4. (November 2005)
    by Y Inbar, H Benyamini, R Nussinov, HJ Wolfson
    posted to docking-algorithm docking-applications docking-symmetry guided-docking quaternary-structure systems-biology by bicko on 2006-06-15 01:39:07 as ** along with 1 person chad_davis
  • Structure, function, and evolution of transient and obligate protein-protein interactions.
    Proc Natl Acad Sci U S A (25 July 2005)
    by Julian Mintseris, Zhiping Weng
    posted to obligate-transient ppi-evolution ppi-review quaternary-structure by bicko on 2005-10-17 11:15:59 as ***** along with 9 people and 3 groups barry bjorns wiehe julianm chad_davis cjeans Evangelia marti higueruelo structural_bioinformatics ZLAB Bioinformatics
  • Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Andrew Bordner, Andrey Gorin
    posted to quaternary-structure by bicko on 2008-08-27 18:00:17 as ** along with 4 people chad_davis guhjy neils phoenixzxl
  • Biological units and their effect upon the properties and prediction of protein-protein interactions.
    J Mol Biol, Vol. 364, No. 5. (15 December 2006), pp. 1118-1129.
    by ER Jefferson, TP Walsh, GJ Barton
    posted to quaternary-structure ppi-database by bicko on 2007-01-15 20:20:30 as ** along with 1 person chad_davis
  • Statistical analysis of domains in interacting protein pairs.
    Bioinformatics (27 October 2004)
    by Tom M W M Nye, Carlo Berzuini, Walter R R Gilks, M Madan M Babu, Sarah A A Teichmann
    posted to ppi-evolution quaternary-structure by bicko on 2005-11-15 16:46:53 as ** along with 3 people hununu satsumakenji choonpeng
  • Inference of macromolecular assemblies from crystalline state.
    J Mol Biol, Vol. 372, No. 3. (21 September 2007), pp. 774-797.
    by E Krissinel, K Henrick
    posted to quaternary-structure by bicko on 2007-09-29 15:52:23 as ** along with 1 person chad_davis
  • Dockground resource for studying proteinprotein interfaces
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2612-2618.
    by Douguet, Dominique, Chen, Huei-Chi, Tovchigrechko, Andrey, Vakser, A Ilya
    posted to docking-benchmark ppi-database quaternary-structure by bicko on 2007-01-15 11:10:21 as ** along with 2 people chad_davis timg
  • Statistical Analysis of Interface Similarity in Crystals of Homologous Proteins.
    Journal of molecular biology (7 June 2008)
    by Qifang Xu, Adrian A A Canutescu, Guoli Wang, Maxim Shapovalov, Zoran Obradovic, Roland L L Dunbrack
    posted to crystal-contacts quaternary-structure by bicko on 2008-08-12 18:04:57 as ** along with 2 people kintoki chad_davis
  • Conservation of Orientation and Sequence in Protein Domain-Domain Interactions
    Journal of Molecular Biology, Vol. 345, No. 5., pp. 1265-1279.
    by Stephen J Littler, Simon J Hubbard
    posted to interface-properties quaternary-structure by bicko on 2006-06-21 14:48:12 as ***** along with 5 people and 2 groups ana Schmidtc cjeans winterschlaefer wilbur structural_bioinformatics Bioinformatics
  • Statistical analysis and prediction of protein-protein interfaces
    Proteins: Structure, Function, and Bioinformatics, Vol. 60, No. 3. (19 May 2005), pp. 353-366.
    by Andrew J Bordner, Ruben Abagyan
    posted to interaction-site-prediction interface-properties quaternary-structure by bicko on 2005-10-17 18:00:30 as ** along with 6 people and 2 groups barry lyongu ameetsoni cjeans Evangelia marti structural_bioinformatics Bioinformatics
  • Discriminating between homodimeric and monomeric proteins in the crystalline state.
    Proteins, Vol. 41, No. 1. (1 October 2000), pp. 47-57.
    by H Ponstingl, K Henrick, JM Thornton
    posted to interface-properties quaternary-structure by bicko on 2006-03-27 16:49:11 as **
  • PiQSi: protein quaternary structure investigation.
    Structure, Vol. 15, No. 11. (November 2007), pp. 1364-1367.
    by ED Levy
    posted to ppi-database quaternary-structure by bicko on 2008-01-09 18:28:00 as **
  • The relationship between sequence and interaction divergence in proteins.
    J Mol Biol, Vol. 332, No. 5. (3 October 2003), pp. 989-998.
    by P Aloy, H Ceulemans, A Stark, RB Russell
    posted to interface-properties ppi-evolution quaternary-structure by bicko on 2005-10-14 10:33:46 as *** along with 6 people bpcusack karbak chad_davis drastic ruvido RebeccaHamer
  • The origins and evolution of functional modules: lessons from protein complexes.
    Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1467. (29 March 2006), pp. 507-517.
    by JB Pereira-Leal, ED Levy, SA Teichmann
    posted to quaternary-structure ppi-evolution ppi-database by bicko on 2007-01-19 12:05:05 as ** along with 4 people agustinarce choonpeng cjeans cmzmasek
  • Biochemistry. Proteins in a small world.
    Science, Vol. 314, No. 5807. (22 December 2006), pp. 1882-1883.
    by TO Yeates, M Beeby
    posted to quaternary-structure protein-networks ppi-review ppi-evolution by bicko on 2007-01-12 18:45:24 as ** along with 1 person and 1 group lfriedl kdl
  • Identification of protein oligomerization states by analysis of interface conservation.
    Proc Natl Acad Sci U S A, Vol. 98, No. 6. (13 March 2001), pp. 2990-2994.
    by AH Elcock, JA McCammon
    posted to crystal-contacts interface-properties ppi-evolution quaternary-structure by bicko on 2005-11-07 15:15:31 as ** along with 2 people Evangelia marti
  • Protein interactions from complexes: a structural perspective.
    Comp Funct Genomics (2007)
    by L Hakes, DL Robertson, SG Oliver, SC Lovell
    posted to ppi-experimental-methods protein-networks quaternary-structure by bicko on 2008-08-12 20:19:20 as ** along with 2 people marti alexg
  • Finding biologically relevant protein domain interactions: conserved binding mode analysis.
    Protein Sci, Vol. 15, No. 2. (February 2006), pp. 352-361.
    by BA Shoemaker, AR Panchenko, SH Bryant
    posted to interface-properties ppi-database quaternary-structure by bicko on 2006-06-21 14:51:23 as ***** along with 2 people jlh64 Evangelia
  • Relating three-dimensional structures to protein networks provides evolutionary insights.
    Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941.
    by PM Kim, LJ Lu, Y Xia, MB Gerstein
    posted to quaternary-structure protein-networks ppi-review ppi-evolution by bicko on 2007-01-09 18:06:43 as ** along with 18 people and 2 groups cerca lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane Pao-Yang phoenixzxl carlk paolomarcatili saket structural_bioinformatics kdl
  • Diversity of protein-protein interactions.
    EMBO J, Vol. 22, No. 14. (15 July 2003), pp. 3486-3492.
    by IM Nooren, JM Thornton
    posted to ppi-evolution ppi-review quaternary-structure by bicko on 2005-10-14 12:31:01 as ** along with 4 people chad_davis drastic Evangelia higueruelo
  • M-ZDOCK: a grid-based approach for Cn symmetric multimer docking
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1472-1478.
    by Brian Pierce, Weiwei Tong, Zhiping Weng
    posted to docking-algorithm docking-symmetry quaternary-structure by bicko on 2006-01-12 12:33:31 as ** along with 1 person and 2 groups jwm Radiation_Damage Stressosome
  • Interaction preferences across protein-protein interfaces of obligatory and non-obligatory components are different.
    BMC Struct Biol, Vol. 5 (16 August 2005)
    by S De, O Krishnadev, N Srinivasan, N Rekha
    posted to contact-pairing-preferences interface-properties obligate-transient ppi-database quaternary-structure by bicko on 2006-05-11 15:26:05 as ** along with 4 people choonpeng medic0747 higueruelo marti
  • 3D complex: a structural classification of protein complexes.
    PLoS Comput Biol, Vol. 2, No. 11. (17 November 2006)
    by ED Levy, JB Pereira-Leal, C Chothia, SA Teichmann
    posted to quaternary-structure protein-networks ppi-evolution ppi-database by bicko on 2007-01-09 15:43:33 as ** along with 2 people and 1 group chad_davis Einat structural_bioinformatics
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