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Tag quantitation [75 articles]

Recent papers classified by the tag quantitation.
  • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.
    Anal Biochem, Vol. 72 (7 May 1976), pp. 248-254.
    by MM Bradford
    posted to protein quantitation by vladimirov on 2008-03-14 12:56:55 as ** along with 1 person nina5577
  • Use of Voigt lineshape for quantification of in vivo 1H spectra.
    Magn Reson Med, Vol. 37, No. 5. (May 1997), pp. 651-657.
    by I Marshall, J Higinbotham, S Bruce, A Freise
    posted to mrs quantitation by sparfait on 2007-02-13 08:52:39 as ***
  • A novel feature-tracking echocardiographic method for the quantitation of regional myocardial function: validation in an animal model of ischemia-reperfusion.
    J Am Coll Cardiol, Vol. 51, No. 6. (12 February 2008), pp. 651-659.
    by B Pirat, DS Khoury, CJ Hartley, L Tiller, L Rao, DG Schulz, SF Nagueh, WA Zoghbi
    posted to animal echocardiography function ischemia model myocardial quantitation reperfusion ultrasound by sjakov on 2008-03-11 16:02:09 as ** along with 1 group VetRadiology
  • A label-free quantification method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen.
    Proteomics, Vol. 8, No. 5. (March 2008), pp. 994-999.
    by JM Asara, HR Christofk, LM Freimark, LC Cantley
    posted to label-free msms_tic proteomics quantification quantitation silac spectral-counting by olberd on 2008-04-22 14:24:44 as read along with 1 person guhjy
  • MapQuant: open-source software for large-scale protein quantification.
    Proteomics, Vol. 6, No. 6. (March 2006), pp. 1770-1782.
    by KC Leptos, DA Sarracino, JD Jaffe, B Krastins, GM Church
    posted to mapquant processing proteomics quantification quantitation software by olberd on 2008-05-08 15:53:43 as ***
  • An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data.
    J Proteome Res, Vol. 7, No. 1. (January 2008), pp. 51-61.
    by LN Mueller, MY Brusniak, DR Mani, R Aebersold
    posted to label-free labelled proteomics quantification quantitation review software by olberd on 2008-04-22 15:04:50 as **** along with 4 people guhjy raiyar nedwards nuin
  • A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data
    Research in Computational Molecular Biology (2007), pp. 473-487.
    by Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert
    posted to openms proteomics quantification quantitation by olberd on 2008-05-04 15:26:40 as read along with 1 person nedwards
  • Comparative LC-MS: a landscape of peaks and valleys.
    Proteomics, Vol. 8, No. 4. (February 2008), pp. 731-749.
    by AH America, JH Cordewener
    posted to proteomics quantification quantitation review software by olberd on 2008-05-24 13:06:09 as ** along with 2 people talponer guhjy
  • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.
    Genome Biol, Vol. 3, No. 7. (18 June 2002)
    by J Vandesompele, K De Preter, F Pattyn, B Poppe, N Van Roy, A De Paepe, F Speleman
    posted to normalization quantification quantitation by olberd on 2008-05-05 14:06:04 as read along with 10 people and 1 group mtruksa xingxu ablejec Yanno ecattell jfr cdawson qfwills aubinhon rschnee GIG
  • Quantitative Proteomic Analysis by Accurate Mass Retention Time Pairs
    Anal. Chem., Vol. 77, No. 7. (1 April 2005), pp. 2187-2200.
    by JC Silva, R Denny, CA Dorschel, M Gorenstein, IJ Kass, GZ Li, T Mckenna, MJ Nold, K Richardson, P Young, S Geromanos
    posted to label-free mse proteomics quantification quantitation by olberd on 2008-06-12 02:27:10 as **
  • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    Mol Cell Proteomics (20 May 2002), M200025-MCP200.
    by Shao-En Ong, Blagoy Blagoev, Irina Kratchmarova, Dan B Kristensen, Hanno Steen, Akhilesh Pandey, Matthias Mann
    posted to labelled proteomics quantification quantitation silac by olberd on 2008-06-12 01:53:52 as *****
  • A quantitative analysis software tool for mass spectrometry–based proteomics
    Nature Methods, Vol. 5, No. 4. (16 March 2008), pp. 319-322.
    by Sung K Park, John D Venable, Tao Xu, John R Yates
    posted to census label-free proteomics quantification quantitation software by olberd on 2008-04-22 15:24:54 as *** along with 2 people guhjy nuin
  • Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments
    Brief Bioinform (28 September 2007), bbm046.
    by Jason W Wong, Matthew J Sullivan, Gerard Cagney
    posted to label-free proteomics quantification quantitation review by olberd on 2008-04-22 15:11:09 as *** along with 2 people guhjy neils
  • Capture and analysis of quantitative proteomic data
    PROTEOMICS, Vol. 9999, No. 9999. (2007), NA.
    by King W Lau, Andrew R Jones, Neil Swainston, Jennifer A Siepen, Simon J Hubbard
    posted to proteomics quantification quantitation software by olberd on 2008-05-24 13:11:19 as ** along with 2 people guhjy dullhunk
  • Chemical probes and tandem mass spectrometry: a strategy for the quantitative analysis of proteomes and subproteomes.
    Current opinion in chemical biology, Vol. 8, No. 1. (February 2004), pp. 66-75.
    by H Zhang, W Yan, R Aebersold
    posted to labelled proteomics quantification quantitation by olberd on 2008-06-12 00:52:43 as **
  • Simultaneous Qualitative and Quantitative Analysis of theEscherichia coli Proteome: A Sweet Tale
    Mol Cell Proteomics, Vol. 5, No. 4. (1 April 2006), pp. 589-607.
    by Jeffrey C Silva, Richard Denny, Craig Dorschel, Marc V Gorenstein, Guo-Zhong Li, Keith Richardson, Daniel Wall, Scott J Geromanos
    posted to mse normalization proteomics quantification quantitation by olberd on 2008-05-05 14:14:03 as read
  • Absolute Quantification of Proteins by LCMSE: A Virtue of Parallel ms Acquisition
    Mol Cell Proteomics, Vol. 5, No. 1. (1 January 2006), pp. 144-156.
    by Jeffrey C Silva, Marc V Gorenstein, Guo-Zhong Li, Johannes P Vissers, Scott J Geromanos
    posted to absolute mse proteomics quantification quantitation by olberd on 2008-05-05 14:10:56 as read along with 1 person nedwards
  • Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples
    Computational Life Sciences (2005), pp. 151-162.
    by Clemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G Huber, Bettina M Mayr, Christoph L Klein
    posted to openms proteomics quantification quantitation by olberd on 2008-05-04 15:29:22 as read
  • Quantitative Proteomic Analysis of Drug-Induced Changes in Mycobacteria
    J. Proteome Res., Vol. 5, No. 1. (6 January 2006), pp. 54-63.
    by MA Hughes, JC Silva, SJ Geromanos, CA Townsend
    posted to mse proteomics quantification quantitation by olberd on 2008-05-05 14:08:43 as read
  • Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents.
    Mol Cell Proteomics, Vol. 3, No. 12. (December 2004), pp. 1154-1169.
    by PL Ross, YN Huang, JN Marchese, B Williamson, K Parker, S Hattan, N Khainovski, S Pillai, S Dey, S Daniels, S Purkayastha, P Juhasz, S Martin, M Bartlet-Jones, F He, A Jacobson, DJ Pappin
    posted to itraq labelled proteomics quantification quantitation by olberd on 2008-06-12 02:02:48 as *****
  • Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution muLC-MS data.
    Anal Chem, Vol. 80, No. 4. (15 February 2008), pp. 961-971.
    by GL Finney, AR Blackler, MR Hoopmann, JD Canterbury, CC Wu, MJ MacCoss
    posted to crawdad label-free proteomics quantification quantitation software by olberd on 2008-04-22 15:20:22 as ** along with 1 person guhjy
  • Correlation between Protein and mRNA Abundance in Yeast
    Mol. Cell. Biol., Vol. 19, No. 3. (1 March 1999), pp. 1720-1730.
    by Steven P Gygi, Yvan Rochon, Robert B Franza, Ruedi Aebersold
    posted to estimate protein quantitation by nicoleq on 2007-03-08 23:47:13 as ** along with 4 people jo_davies gabe_rosser caseybrown bpcusack
  • Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
    Nature (28 September 2008)
    by Lyris MF de Godoy, Jesper V Olsen, Jürgen Cox, Michael L Nielsen, Nina C Hubner, Florian Fröhlich, Tobias C Walther, Matthias Mann
    posted to yeast quantitation proteomics protein mass-spec by neils on 2008-10-29 23:55:19 as ** along with 6 people and 2 groups oelemento stajich caseybrown dullhunk brianb thomaskelder Berkeley Mycology microbiology_nijmegen
  • A one-step SYBR Green I-based product-enhanced reverse transcriptase assay for the quantitation of retroviruses in cell culture supernatants.
    Journal of virological methods (17 November 2008)
    by Massimo Pizzato, Otto Erlwein, David Bonsall, Stephen Kaye, David Muir, Myra O O McClure
    posted to replication quantitation proliferation hiv by mijogiffin on 2008-11-26 02:40:25 as **
  • Absolute Activity Quantitation in Simultaneous 123I/99mTc Brain SPECT
    J Nucl Med, Vol. 42, No. 2. (1 February 2001), pp. 300-308.
    by El, Stephen C Moore, Philippe Maksud, Andre Aurengo, Marie F Kijewski
    posted to spect simulation quantitation neural network monte dual-isotope cross-talk compensation carlo brain artificial absolute by mariosmy on 2008-11-03 22:54:25 as **
  • Quantitative Profile of Five Murine Core Proteomes Using Label-free Functional Proteomics.
    Mol Cell Proteomics, Vol. 6, No. 9. (September 2007), pp. 1560-1573.
    by PR Cutillas, B Vanhaesebroeck
    posted to label-free ms quantitation by js7814 on 2007-09-23 22:10:45 as ** along with 3 people guhjy nedwards nuin
  • Comparison of Label-free Methods for Quantifying Human Proteins by Shotgun Proteomics
    Mol Cell Proteomics, Vol. 4, No. 10. (1 October 2005), pp. 1487-1502.
    by William M Old, Karen Meyer-Arendt, Lauren Aveline-Wolf, Kevin G Pierce, Alex Mendoza, Joel R Sevinsky, Katheryn A Resing, Natalie G Ahn
    posted to label-free ms quantitation by js7814 on 2007-09-23 22:09:01 as ** along with 3 people kentsis nedwards nuin
  • Quantitative RT-PCR: pitfalls and potential.
    BioTechniques, Vol. 26, No. 1. (January 1999)
    by WM Freeman, SJ Walker, KE Vrana
    posted to pcr qpcr quantitation quantitative real rt-pcr time by fhsantanna on 2008-06-23 21:27:36 as ** along with 1 person lisa1
  • Computational analysis of small RNA cloning data
    Methods, Vol. 44, No. 1. (January 2008), pp. 13-21.
    by Philipp Berninger, Dimos Gaidatzis, Erik van Nimwegen, Mihaela Zavolan
    posted to bayesian cloning expression methods mirna quantitation by delenca on 2008-07-08 19:01:01 as ** along with 3 people orzenil guhjy jfr
  • A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1401-1414.
    by P Landgraf, M Rusu, R Sheridan, A Sewer, N Iovino, A Aravin, S Pfeffer, A Rice, AO Kamphorst, M Landthaler, C Lin, ND Socci, L Hermida, V Fulci, S Chiaretti, R Foà, J Schliwka, U Fuchs, A Novosel, RU Müller, B Schermer, U Bissels, J Inman, Q Phan, M Chien, DB Weir, R Choksi, G De Vita, D Frezzetti, HI Trompeter, V Hornung, G Teng, G Hartmann, M Palkovits, R Di Lauro, P Wernet, G Macino, CE Rogler, JW Nagle, J Ju, FN Papavasiliou, T Benzing, P Lichter, W Tam, MJ Brownstein, A Bosio, A Borkhardt, JJ Russo, C Sander, M Zavolan, T Tuschl
    posted to atlas bayesian cloning expression mirna quantitation by delenca on 2008-07-08 18:50:39 as ** along with 11 people and 2 groups guhjy jfr andersbj rahulthadani xiuminyan heliopais maralena giovenko caseybrown yoonk gdb Bioinformatics microRNA
  • Quantitation of DNA and RNA
    Cold Spring Harbor Protocols, Vol. 2007, No. 22. (1 November 2007), pdb.ip47.
    by Carlos F Barbas, Dennis R Burton, Jamie K Scott, Gregg J Silverman
    posted to dna laboratory method methods molecular protocol protocols quantitation rna by dacrotty on 2008-01-25 15:45:07 as read
  • Real-time PCR for mRNA quantitation.
    Biotechniques, Vol. 39, No. 1. (July 2005), pp. 75-85.
    by ML Wong, JF Medrano
    posted to pcr quantitation review by chenlc03 on 2006-11-06 15:15:53 as *** along with 1 person qfwills
  • Transient heterogeneity in extracellular protease production by Bacillus subtilis
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Jan-Willem Veening, Oleg A Igoshin, Robyn T Eijlander, Reindert Nijland, Leendert W Hamoen, Oscar P Kuipers
    posted to modeling quantitation subtilis by brianb on 2008-05-08 19:13:29 as ** along with 2 people balabu margaritis
  • Time Series Proteome Profiling To Study Endoplasmic Reticulum Stress Response
    J. Proteome Res. (25 April 2008)
    by Michelle Mintz, Adeline Vanderver, Kristy J Brown, Joseph Lin, Zuyi Wang, Christine Kaneski, Raphael Schiffmann, Kanneboyina Nagaraju, Eric P Hoffman, Yetrib Hathout
    posted to time-course proteomics quantitation silac by brianb on 2008-04-26 04:30:09 as **
  • Cell surface proteomics identifies molecules functionally linked to tumor cell intravasation
    J. Biol. Chem. (24 July 2008), M803337200.
    by Erin M Conn, Mark A Madsen, Benjamin F Cravatt, Wolfram Ruf, Elena I Deryugina, James P Quigley
    posted to cancer proteomics quantitation by brianb on 2008-08-28 01:58:18 as **
  • 2D-PAGE maps analysis.
    Methods in molecular biology (Clifton, N.J.), Vol. 428 (2008), pp. 291-325.
    by E Marengo, E Robotti, M Bobba
    posted to quantitation proteomics electrophoresis by brianb on 2008-11-14 19:54:24 as **
  • MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification.
    Nature biotechnology (30 November 2008)
    by Jürgen Cox, Matthias Mann
    posted to quantitation proteomics fdr bioinformatics by brianb on 2008-11-26 14:39:01 as **
  • The myth of automated, high-throughput two-dimensional gel analysis.
    Proteomics, Vol. 8, No. 6. (March 2008), pp. 1197-1203.
    by BN Clark, HB Gutstein
    posted to quantitation proteomics electrophoresis by brianb on 2008-11-14 19:59:43 as ** along with 1 person guhjy
  • Heat-Shock Response in Arabidopsis thaliana Explored by Multiplexed Quantitative Proteomics Using Differential Metabolic Labeling
    J. Proteome Res., Vol. 7, No. 2. (1 February 2008), pp. 780-785.
    by Magnus Palmblad, Davinia J Mills, Laurence V Bindschedler
    posted to time-course proteomics quantitation by brianb on 2008-05-17 01:04:58 as **
  • Quantitative Analysis of Brain Nuclear Phosphoproteins Identifies Developmentally Regulated Phosphorylation Events.
    Journal of proteome research (30 September 2008)
    by Lujian Liao, Daniel B McClatchy, Sung K Park, Tao Xu, Bingwen Lu, John R Yates
    posted to quantitation ptm proteomics by brianb on 2008-10-01 23:48:28 as **
  • High-coverage quantitative proteomics using amine-specific isotopic labeling.
    Proteomics, Vol. 6, No. 16. (August 2006), pp. 4466-4474.
    by JE Melanson, SL Avery, DM Pinto
    posted to formaldehyde proteomics quantitation by brianb on 2008-06-06 04:58:05 as **
  • Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins.
    Mol Cell Proteomics, Vol. 5, No. 4. (April 2006), pp. 573-588.
    by L Anderson, CL Hunter
    posted to quantitation proteomics by brianb on 2008-11-17 02:56:48 as ** along with 1 person guhjy
  • High confidence determination of specific protein-protein interactions using quantitative mass spectrometry.
    Current opinion in biotechnology (27 June 2008)
    by Michiel Vermeulen, Nina C C Hubner, Matthias Mann
    posted to interaction proteomics quantitation by brianb on 2008-07-03 16:06:53 as ** along with 1 person guhjy
  • Protein abundance profiling of the Escherichia coli cytosol
    BMC Genomics, Vol. 9 (27 February 2008), 102.
    by Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, Ulrich F Hartl, Michael J Kerner, Dmitrij Frishman
    posted to proteomics quantitation by brianb on 2008-06-08 04:08:16 as ** along with 2 people Retchless osilander
  • Targeted comparative proteomics by liquid chromatography/matrix-assisted laser desorption/ionization triple-quadrupole mass spectrometry.
    Rapid communications in mass spectrometry : RCM, Vol. 20, No. 5. (2006), pp. 904-910.
    by JE Melanson, KA Chisholm, DM Pinto
    posted to formaldehyde proteomics quantitation by brianb on 2008-06-06 05:06:54 as **
  • Temporal Profiling of the Adipocyte Proteome during Differentiation Using a Five-Plex SILAC Based Strategy
    J. Proteome Res. (24 October 2008)
    by Henrik Molina, Yi Yang, Travis Ruch, Jae-Woo Kim, Peter Mortensen, Tamara Otto, Anuradha Nalli, Qi-Qun Tang, Daniel M Lane, Raghothama Chaerkady, Akhilesh Pandey
    posted to silac quantitation proteomics by brianb on 2008-10-24 16:36:09 as **
  • TandTRAQ: an open-source tool for integrated protein identification and quantitation.
    Bioinformatics (Oxford, England), Vol. 23, No. 24. (15 December 2007), pp. 3394-3396.
    by T Laderas, C Bystrom, D McMillen, G Fan, S McWeeney
    posted to bioinformatics itraq proteomics quantitation by brianb on 2008-08-27 23:32:54 as ** along with 1 person guhjy
  • Multiple Reaction Monitoring of mTRAQ-Labeled Peptides Enables Absolute Quantification of Endogenous Levels of a Potential Cancer Marker in Cancerous and Normal Endometrial Tissues
    J. Proteome Res. (17 July 2008)
    by Leroi V Desouza, Adrian M Taylor, Wei Li, Marjorie S Minkoff, Alexander D Romaschin, Terence J Colgan, Michael KW Siu
    posted to proteomics quantitation by brianb on 2008-07-22 15:34:36 as ** along with 1 person guhjy
  • Quantitative mass spectrometry as a tool for nutritional proteomics.
    The American journal of clinical nutrition, Vol. 88, No. 3. (September 2008), pp. 597-604.
    by JJ Moresco, MQ Dong, JR Yates
    posted to quantitation proteomics by brianb on 2008-10-01 23:49:06 as **
  • Quantitative Analysis of Pathways Controlling Extrinsic Apoptosis in Single Cells
    Molecular Cell, Vol. 30, No. 1. (11 April 2008), pp. 11-25.
    by John G Albeck, John M Burke, Bree B Aldridge, Mingsheng Zhang, Douglas A Lauffenburger, Peter K Sorger
    posted to apoptosis modeling proteomics quantitation signaling by brianb on 2008-05-08 19:09:55 as ** along with 2 people and 1 group jaycopeland burkey SorgerLab
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