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Tag proteome [195 articles]

Recent papers classified by the tag proteome.
  • Serum proteome profiling of metastatic breast cancer using recombinant antibody microarrays
    European Journal of Cancer, Vol. 44, No. 3. (February 2008), pp. 472-480.
    by A Carlsson
    posted to serum review proteome profile cancer breast by Zephyrus on 2008-11-29 01:01:52 as **
  • Mining the plasma proteome for cancer biomarkers
    Nature, Vol. 452, No. 7187. (02 April 2008), pp. 571-579.
    by Samir M Hanash, Sharon J Pitteri, Vitor M Faca
    posted to standards protocol proteome plasma cancer-crosstalk cancer biomarker by Zephyrus on 2008-11-03 15:44:31 as ** along with 3 people and 1 group jfr guhjy frohike Roswell Cancer Crosstalk
  • Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics
    Science (24 April 2008), 1157956.
    by Katja Baerenfaller, Jonas Grossmann, Monica A Grobei, Roger Hull, Matthias Hirsch-Hoffmann, Shaul Yalovsky, Philip Zimmermann, Ueli Grossniklaus, Wilhelm Gruissem, Sacha Baginsky
    posted to arabidopsis proteome system_biology by xwbcn on 2008-04-27 17:35:19 as ** along with 6 people druvus timflutre renatomilani megraw caseybrown jmjimenez
  • Proteome survey reveals modularity of the yeast cell machinery
    Nature (22 January 2006)
    by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J Jensen, Sonja Bastuck, Birgit Dümpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M Rick, Bernhard Kuster, Peer Bork, Robert B Russell, Giulio Superti-Furga
    posted to bio-informatics cell complexes high-throughput large-scale machinery modularity protein proteome proteomics yeast by xico on 2006-01-30 19:41:37 as **** along with 24 people and 10 groups saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes phoenixzxl larsjuhljensen ellakat frohike carlk ethkim structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
  • NOPdb: Nucleolar Proteome Database.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by AK Leung, L Trinkle-Mulcahy, YW Lam, JS Andersen, M Mann, AI Lamond
    posted to database nopdb nucleolus proteome by uz_labu_laimi on 2007-05-22 05:41:31 as *****
  • The extant core bacterial proteome is an archive of the origin of life.
    Proteomics, Vol. 7, No. 6. (March 2007), pp. 875-889.
    by A Danchin, G Fang, S Noria
    posted to proteome core bacteria by treangen on 2008-11-19 13:44:15 as ***
  • Comparative Bacterial Proteomics: Analysis of the Core Genome Concept
    PLoS ONE, Vol. 3, No. 2. (6 February 2008), e1542.
    by Stephen J Callister, Lee A Mccue, Joshua E Turse, Matthew E Monroe, Kenneth J Auberry, Richard D Smith, Joshua N Adkins, Mary S Lipton
    posted to proteome genome core bacteria by treangen on 2008-11-20 14:02:10 as ** along with 2 people and 2 groups druvus jlgreen Green Lab iSEEM
  • Visualisation and graph-theoretic analysis of a large-scale protein structural interactome.
    BMC bioinformatics, Vol. 4 (8 October 2003)
    by D Bolser, P Dafas, R Harrington, J Park, M Schroeder
    posted to proteome by tomhebbron on 2008-11-13 17:20:34 as **
  • From words to literature in structural proteomics.
    Nature, Vol. 422, No. 6928. (13 March 2003), pp. 216-225.
    by A Sali, R Glaeser, T Earnest, W Baumeister
    posted to proteome by tomhebbron on 2008-11-28 12:35:51 as ** along with 6 people bicko chad_davis dgront ruvido lpfernandes higueruelo
  • A systematic approach to modeling, capturing, and disseminating proteomics experimental data.
    Nat Biotechnol, Vol. 21, No. 3. (March 2003), pp. 247-254.
    by CF Taylor, NW Paton, KL Garwood, PD Kirby, DA Stead, Z Yin, EW Deutsch, L Selway, J Walker, I Riba-Garcia, S Mohammed, MJ Deery, JA Howard, T Dunkley, R Aebersold, DB Kell, KS Lilley, P Roepstorff, JR Yates, A Brass, AJ Brown, P Cash, SJ Gaskell, SJ Hubbard, SG Oliver
    posted to proteome by tomhebbron on 2008-11-13 17:10:05 as ** along with 5 people and 3 groups dbk irenas andytseng katerinakal fgibson streptomyces dbk-lab GelML
  • The yeast cell-cycle network is robustly designed
    PNAS, Vol. 101, No. 14. (6 April 2004), pp. 4781-4786.
    by Fangting Li, Tao Long, Ying Lu, Qi Ouyang, Chao Tang
    posted to yeast topology proteome by tomhebbron on 2008-11-28 12:34:35 as ** along with 5 people behindtherabbit jmenche eldan timflutre jiny
  • A biological approach to computational models of proteomic networks
    Current Opinion in Chemical Biology, Vol. In Press, Corrected Proof
    by Kevin A Janes, Douglas A Lauffenburger
    posted to proteome by tomhebbron on 2008-11-13 17:12:46 as ** along with 7 people and 2 groups Borelli Ayest eweaver julius ponsfrilus cdppublications cdpwebadmin SysbioMPI-TCells CDP
  • PROTEOMICS: Enhanced: Integrating Interactomes
    Science, Vol. 295, No. 5553. (11 January 2002), pp. 284-287.
    by Mark Gerstein, Ning Lan, Ronald Jansen
    posted to proteome interactome by tomhebbron on 2008-11-13 17:02:05 as ** along with 4 people and 1 group ronkeliz lfriedl balajis grahamc kdl
  • A human protein-protein interaction network: a resource for annotating the proteome.
    Cell, Vol. 122, No. 6. (23 September 2005), pp. 957-968.
    by U Stelzl, U Worm, M Lalowski, C Haenig, FH Brembeck, H Goehler, M Stroedicke, M Zenkner, A Schoenherr, S Koeppen, J Timm, S Mintzlaff, C Abraham, N Bock, S Kietzmann, A Goedde, E Toksöz, A Droege, S Krobitsch, B Korn, W Birchmeier, H Lehrach, EE Wanker
    posted to network proteome by textoris on 2006-01-25 10:28:04 as read along with 10 people aelef biozhang2001 dragonrez kuhn Schmidtc maryee eukfn pattisyang antonkratz Evangelia
  • Systems analysis of transcriptome and proteome in retinoic acid/arsenic trioxide-induced cell differentiation/apoptosis of promyelocytic leukemia.
    Proc Natl Acad Sci U S A, Vol. 102, No. 21. (24 May 2005), pp. 7653-7658.
    by PZ Zheng, KK Wang, QY Zhang, QH Huang, YZ Du, QH Zhang, DK Xiao, SH Shen, S Imbeaud, E Eveno, CJ Zhao, YL Chen, HY Fan, S Waxman, C Auffray, G Jin, SJ Chen, Z Chen, J Zhang
    posted to genomique integrative proteome transcriptome by textoris on 2005-06-27 21:06:00 as **
  • Comparative proteome analyses of human plasma following
    PROTEOMICS, Vol. 5, No. 2. (3 January 2005), pp. 572-584.
    by Wei-Jun Qian, Jon M Jacobs, David G Camp, Matthew E Monroe, Ronald J Moore, Marina A Gritsenko, Steve E Calvano, Stephen F Lowry, Wenzhong Xiao, Lyle L Moldawer, Ronald W Davis, Ronald G Tompkins, Richard D Smith
    posted to genomique proteome sepsis by textoris on 2005-07-08 19:20:10 as **
  • Serum proteomics profiling—a young technology begins to mature
    Nature Biotechnology, Vol. 23, No. 3., pp. 291-292.
    by Kevin R Coombes, Jeffrey S Morris, Jianhua Hu, Sarah R Edmonson, Keith A Baggerly
    posted to proteome serum by sverzijl on 2007-08-19 12:14:11 as read
  • The serum proteome of <B><I>Equus caballus</I></B>
    PROTEOMICS, Vol. 4, No. 10. (2004), pp. 3227-3234.
    by Ingrid Miller, Arno Friedlein, George Tsangaris, Antony Maris, Michael Fountoulakis, Manfred Gemeiner
    posted to caballus electrophoresis equus proteins proteome serum spectrometry by sverzijl on 2007-08-19 09:19:59 as read
  • notes A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses.
    Science, Vol. 307, No. 5706. (7 January 2005), pp. 82-86.
    by N Hall, M Karras, JD Raine, JM Carlton, TW Kooij, M Berriman, L Florens, CS Janssen, A Pain, GK Christophides, K James, K Rutherford, B Harris, D Harris, C Churcher, MA Quail, D Ormond, J Doggett, HE Trueman, J Mendoza, SL Bidwell, MA Rajandream, DJ Carucci, JR Yates, FC Kafatos, CJ Janse, B Barrell, CM Turner, AP Waters, RE Sinden
    posted to beghei malaria plasmodium postgenomics proteome transcriptome by Sharpshoot on 2006-12-07 13:42:03 as ***** along with 4 people maxell becarmson alexl mdimon
  • Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle.
    Genome Res, Vol. 14, No. 11. (November 2004), pp. 2308-2318.
    by KG Le Roch, JR Johnson, L Florens, Y Zhou, A Santrosyan, M Grainger, SF Yan, KC Williamson, AA Holder, DJ Carucci, JR Yates, EA Winzeler
    posted to malaria plasmodium proteome transcriptome by Sharpshoot on 2006-09-12 19:00:38 as ** along with 1 person becarmson
  • notes The Plasmodium selenoproteome.
    Nucleic Acids Res, Vol. 34, No. 2. (2006), pp. 496-505.
    by AV Lobanov, C Delgado, S Rahlfs, SV Novoselov, GV Kryukov, S Gromer, DL Hatfield, K Becker, VN Gladyshev
    posted to malaria proteome selenocystome by Sharpshoot on 2006-12-12 11:48:58 as ****
  • notes Plasmodium rhoptries: how things went pear-shaped.
    Trends Parasitol, Vol. 22, No. 6. (June 2006), pp. 269-276.
    by LM Kats, CG Black, NI Proellocks, RL Coppel
    posted to invasion proteins proteome rhoptry by Sharpshoot on 2006-11-22 16:30:21 as ****
  • notes Proteomic approaches to studying drug targets and resistance in Plasmodium.
    Curr Drug Targets Infect Disord, Vol. 4, No. 1. (March 2004), pp. 41-51.
    by RA Cooper, DJ Carucci
    posted to malaria postgenomics proteome transcriptome by Sharpshoot on 2006-11-23 15:56:24 as **
  • notes The genomics of malaria infection.
    Trends Parasitol, Vol. 20, No. 12. (December 2004), pp. 553-557.
    by RL Coppel, DS Roos, Z Bozdech
    posted to genomics malaria postgenomics proteome transcriptome by Sharpshoot on 2006-11-23 15:58:24 as *** along with 1 person larios
  • notes Proteomic analysis identifies novel proteins of the Maurer's clefts, a secretory compartment delivering Plasmodium falciparum proteins to the surface of its host cell.
    Mol Cell Proteomics, Vol. 4, No. 4. (April 2005), pp. 582-593.
    by L Vincensini, S Richert, T Blisnick, A Van Dorsselaer, E Leize-Wagner, T Rabilloud, C Braun Breton
    posted to maurerscleft proteome by Sharpshoot on 2006-12-11 17:47:15 as read
  • notes Proteome analysis of rhoptry-enriched fractions isolated from Plasmodium merozoites.
    J Proteome Res, Vol. 3, No. 5. (t 2004), pp. 995-1001.
    by TY Sam-Yellowe, L Florens, T Wang, JD Raine, DJ Carucci, R Sinden, JR Yates
    posted to beghei falciparam proteins proteome rhoptry by Sharpshoot on 2006-12-07 13:43:30 as *****
  • notes The transcriptome: malariologists ride the wave.
    Bioessays, Vol. 26, No. 4. (April 2004), pp. 339-342.
    by RJ Wilson
    posted to malaria proteome transcriptome by Sharpshoot on 2006-11-23 18:45:24 as **
  • notes Abundance of intrinsically unstructured proteins in P. falciparum and other apicomplexan parasite proteomes.
    Mol Biochem Parasitol, Vol. 150, No. 2. (December 2006), pp. 256-267.
    by ZP Feng, X Zhang, P Han, N Arora, RF Anders, RS Norton
    posted to genomics plasmodium proteome by Sharpshoot on 2006-11-22 16:26:12 as **
  • Natural Selection against Protein Aggregation on Self-Interacting and Essential Proteins in Yeast, Fly, and Worm
    Mol Biol Evol, Vol. 25, No. 8. (1 August 2008), pp. 1530-1533.
    by Yiwen Chen, Nikolay V Dokholyan
    posted to proteome protein_aggregation natural_selection functional_genomics drosophila_melanogaster caenorhabditis_elegans by scherrer on 2008-09-26 17:51:24 as read
  • Prediction of liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome using artificial neural networks.
    J Proteome Res, Vol. 5, No. 12. (December 2006), pp. 3312-3317.
    by K Shinoda, M Sugimoto, N Yachie, N Sugiyama, T Masuda, M Robert, T Soga, M Tomita
    posted to proteome by s02428ks on 2007-02-04 03:09:57 as **
  • Proteomic identification of p53-dependent protein phosphorylation
    Oncogene, Vol. aop, No. current.
    by R Rahman-Roblick, U Hellman, S Becker, FG Bader, G Auer, KG Wiman, UJ Roblick
    posted to kinase methods p53 proteome by renatomilani on 2008-08-18 19:44:05 as **
  • Dissection of the insulin signaling pathway via quantitative phosphoproteomics
    Proceedings of the National Academy of Sciences, Vol. 105, No. 7. (19 February 2008), pp. 2451-2456.
    by Marcus Kruger, Irina Kratchmarova, Blagoy Blagoev, Yu-Hua Tseng, Ronald C Kahn, Matthias Mann
    posted to pathway proteome signaling by renatomilani on 2008-02-20 12:42:15 as ** along with 3 people guhjy Evangelia brianb
  • Proteome expression moves in vitro: resources and tools for harnessing the human proteome
    Nature Methods, Vol. 5, No. 12., pp. 1001-1002.
    by James L Hartley, Kourosh Salehi-Ashtiani, David E Hill
    posted to proteome methods expression by renatomilani on 2008-11-26 13:02:24 as **
  • Bioinformatics analysis for interactive proteomics.
    Current protocols in protein science / editorial board, John E. Coligan ... [et al.], Vol. Chapter 25 (December 2005)
    by Y Chen, D Xu
    posted to bioinformatics interaction network proteome by renatomilani on 2008-06-20 19:40:30 as **
  • Computational proteomics: management and analysis of proteomics data
    Brief Bioinform (29 February 2008), bbn011.
    by Mario Cannataro
    posted to proteome review by renatomilani on 2008-03-01 15:17:12 as ** along with 2 people guhjy olberd
  • How to "Cell" a Genomic or Proteomic Screen
    Sci. Signal., Vol. 1, No. 47. (25 November 2008), eg9.
    by Michael B Yaffe
    posted to signaling screening proteome pathway network genome editorial cell by renatomilani on 2008-11-26 20:11:55 as **
  • Dynamic Proteomics of Individual Cancer Cells in Response to a Drug
    Science (20 November 2008), 1160165.
    by AA Cohen, N Geva-Zatorsky, E Eden, M Frenkel-Morgenstern, I Issaeva, A Sigal, R Milo, C Cohen-Saidon, Y Liron, Z Kam, L Cohen, T Danon, N Perzov, U Alon
    posted to proteome protein methods drug cancer biotech by renatomilani on 2008-11-24 02:34:01 as ** along with 4 people caseybrown winterschlaefer sjcockell pengchy
  • ProteoWizard: Open Source Software for Rapid Proteomics Tools Development
    Bioinformatics (7 July 2008), btn323.
    by Darren Kessner, Matt Chambers, Robert Burke, David Agus, Parag Mallick
    posted to proteome tool by renatomilani on 2008-07-08 20:03:59 as ** along with 2 people groepl guhjy
  • PROTEOMICS: Proteomics Ponders Prime Time
    Science, Vol. 321, No. 5897. (26 September 2008), pp. 1758-1761.
    by Robert F Service
    posted to proteome by renatomilani on 2008-09-30 21:31:24 as ** along with 3 people jfr guhjy balicea
  • Pinnacle: A Fast, Automatic and Accurate Method for Detecting andQuantifying Protein Spots in 2-Dimensional Gel Electrophoresis Data.
    Bioinformatics (14 January 2008)
    by Jeffrey S S Morris, Brittain C C Walla, Howard B B Gutstein
    posted to bioinformatics proteome by renatomilani on 2008-01-20 02:32:40 as ** along with 3 people brianb guhjy drarloki
  • Proteomics studies confirm the presence of alternative protein isoforms on a large scale
    Genome Biology, Vol. 9 (18 November 2008), R162.
    by Michael, Alfonso Valencia
    posted to proteome protein methods isoform by renatomilani on 2008-11-24 02:35:11 as ** along with 3 people bpcusack grahamc reyez
  • Human protein factory for converting the transcriptome into an in vitroexpressed proteome
    Nature Methods, Vol. 5, No. 12. (23 November 2008), pp. 1011-1017.
    by Naoki Goshima, Yoshifumi Kawamura, Akiko Fukumoto, Aya Miura, Reiko Honma, Ryohei Satoh, Ai Wakamatsu, Jun-Ichi Yamamoto, Kouichi Kimura, Tetsuo Nishikawa, Taichi Andoh, Yuki Iida, Kumiko Ishikawa, Emi Ito, Naoko Kagawa, Chie Kaminaga, Kei-Ichi Kanehori, Bunsei Kawakami, Kiyokazu Kenmochi, Rie Kimura, Miki Kobayashi, Toshihiro Kuroita, Hisashi Kuwayama, Yukio Maruyama, Kiyoshi Matsuo, Kazuyoshi Minami, Mariko Mitsubori, Masatoshi Mori, Riyo Morishita, Atsushi Murase, Akira Nishikawa, Shigemichi Nishikawa, Toshihiko Okamoto, Noriko Sakagami, Yutaka Sakamoto, Yukari Sasaki, Tomoe Seki, Saki Sono, Akio Sugiyama, Tsuyoshi Sumiya, Tomoko Takayama, Yukiko Takayama, Hiroyuki Takeda, Takushi Togashi, Kazuhide Yahata, Hiroko Yamada, Yuka Yanagisawa, Yaeta Endo, Fumio Imamoto, Yasutomo Kisu, Shigeo Tanaka, Takao Isogai, Jun-Ichi Imai, Shinya Watanabe, Nobuo Nomura
    posted to proteome methods expression by renatomilani on 2008-11-26 13:03:01 as **
  • Illuminating signaling network functional biology through quantitative phosphoproteomic mass spectrometry
    Brief Funct Genomic Proteomic (4 October 2008), eln037.
    by Nathan C Tedford, Forest M White, Jeffrey A Radding
    posted to signaling proteome network ms kinase by renatomilani on 2008-10-06 18:34:26 as ** along with 1 person guhjy
  • Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle.
    Molecular cell, Vol. 31, No. 3. (8 August 2008), pp. 438-448.
    by H Daub, JV Olsen, M Bairlein, F Gnad, FS Oppermann, R Körner, Z Greff, G Kéri, O Stemmann, M Mann
    posted to proteome methods kinome kinase cell-cycle by renatomilani on 2008-10-01 13:25:06 as ** along with 2 people fredrikberglund guhjy
  • Discovery of Phosphorylation Motif Mixtures in Phosphoproteomics Data.
    Bioinformatics (Oxford, England) (7 November 2008)
    by Anna Ritz, Gregory Shakhnarovich, Arthur R R Salomon, Benjamin J J Raphael
    posted to tool proteome motif kinase bioinformatics by renatomilani on 2008-11-14 16:28:35 as ** along with 1 person guhjy
  • Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics.
    Proc Natl Acad Sci U S A (24 January 2008)
    by Mihaela E E Sardiu, Yong Cai, Jingji Jin, Selene K K Swanson, Ronald C C Conaway, Joan W W Conaway, Laurence Florens, Michael P P Washburn
    posted to interaction network proteome by renatomilani on 2008-01-31 10:52:52 as ** along with 2 people guhjy brianb
  • A combined transcriptome and proteome survey of malaria parasite liver stages.
    Proc Natl Acad Sci U S A (2 January 2008)
    by Alice S S Tarun, Xinxia Peng, Ronald F F Dumpit, Yuko Ogata, Hilda Silva-Rivera, Nelly Camargo, Thomas M M Daly, Lawrence W W Bergman, Stefan H I H Kappe
    posted to malaria proteome by renatomilani on 2008-01-09 10:58:55 as ** along with 5 people tmmurali GeeSharpMinor oelemento mdimon shuzhens
  • Automated extraction of meaningful pathways from quantitative proteomics data
    Brief Funct Genomic Proteomic, Vol. 7, No. 2. (1 March 2008), pp. 136-146.
    by Josselin Noirel, Saw Y Ow, Guido Sanguinetti, Alfonso Jaramillo, Phillip C Wright
    posted to bioinformatics proteome by renatomilani on 2008-05-13 20:32:21 as **
  • The untiring search for the most complete proteome representation: reviewing the methods
    Brief Funct Genomic Proteomic (29 May 2008), eln023.
    by Daniel M de Souza, Bruno M Oliveira, Erich Castro-Dias, Flavia V Winck, Ricardo S Horiuchi, Paulo A Baldasso, Hugo T Caetano, Natalia K Pires, Sergio Marangoni, Jose C Novello
    posted to methods proteome by renatomilani on 2008-05-30 13:02:20 as ** along with 2 people guhjy pengchy
  • Information quality in proteomics
    Brief Bioinform, Vol. 9, No. 2. (1 March 2008), pp. 174-188.
    by David A Stead, Norman W Paton, Paolo Missier, Suzanne M Embury, Cornelia Hedeler, Binling Jin, Alistair J Brown, Alun Preece
    posted to bioinformatics pipeline proteome review by renatomilani on 2008-04-29 19:53:13 as ***** along with 2 people neils alanrw
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