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Tag proteinfolding [42 articles]

Recent papers classified by the tag proteinfolding.
  • Protein Folding
    Annual Review of Biochemistry, Vol. 50, No. 1. (1981), pp. 497-532.
    by MG Rossmann, P Argos
    posted to proteinfolding pathways history 1981 by toerst on 2008-09-09 17:45:04 as **
  • Crowded, cell-like environment induces shape changes in aspherical protein
    Proceedings of the National Academy of Sciences, Vol. 105, No. 33. (2008), pp. 11754-11759.
    by Dirar Homouz, Michael Perham, Antonios Samiotakis, Margaret S Cheung, Pernilla Wittung-Stafshede
    posted to cell-like-environment proteinfolding by TOchi on 2008-08-21 10:05:47 as ** along with 2 people ras kentsis
  • OB(oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences.
    EMBO J, Vol. 12, No. 3. (March 1993), pp. 861-867.
    by AG Murzin
    posted to dnaligase proteinfolding by TOchi on 2007-12-10 15:28:06 as **
  • Rigorous results on the local equilibrium kinetics of a protein folding model
    J. Stat. Mech., Vol. 2006, No. 12. (December 2006), P12009.
    by Marco Zamparo, Alessandro Pelizzola
    posted to proteinfolding by madhadron on 2006-12-28 14:28:21 as **
  • Adapting Proteostasis for Disease Intervention
    Science, Vol. 319, No. 5865. (15 February 2008), pp. 916-919.
    by William E Balch, Richard I Morimoto, Andrew Dillin, Jeffery W Kelly
    posted to therapy review proteostasis proteinfolding heatshock by inbetweener on 2008-09-17 23:14:33 as ** along with 2 people bpcusack davidlott
  • Protein misfolding, functional amyloid, and human disease.
    Annu Rev Biochem, Vol. 75 (2006), pp. 333-366.
    by F Chiti, CM Dobson
    posted to review proteinfolding proteinchemistry geneticdisease biochemistry amyloid aggregation by inbetweener on 2008-09-08 20:15:09 as **** along with 2 people allmensch jennifermbui
  • Consequences of poly-glutamine repeat length for the conformation and folding of the androgen receptor amino-terminal domain.
    Journal of molecular endocrinology, Vol. 41, No. 5. (November 2008), pp. 301-314.
    by P Davies, K Watt, SM Kelly, C Clark, NC Price, IJ McEwan
    posted to proteinfolding polyglutamine ar by inbetweener on 2008-11-27 14:14:09 as **
  • Toxic proteins in neurodegenerative disease.
    Science (New York, N.Y.), Vol. 296, No. 5575. (14 June 2002), pp. 1991-1995.
    by JP Taylor, J Hardy, KH Fischbeck
    posted to review proteinfolding neurodegeneration aggregation by inbetweener on 2008-09-08 19:19:17 as read
  • Aggresomes, inclusion bodies and protein aggregation.
    Trends in cell biology, Vol. 10, No. 12. (December 2000), pp. 524-530.
    by RR Kopito
    posted to review proteinfolding inclusions aggregation by inbetweener on 2008-09-13 13:43:01 as **
  • A Rhodopsin Mutant Linked to Autosomal Dominant Retinitis Pigmentosa Is Prone to Aggregate and Interacts with the Ubiquitin Proteasome System
    J. Biol. Chem., Vol. 277, No. 37. (6 September 2002), pp. 34150-34160.
    by Michelle E Illing, Rahul S Rajan, Neil F Bence, Ron R Kopito
    posted to rhodopsin retinitispigmentosa proteinfolding aggregation by inbetweener on 2008-09-13 12:47:45 as **
  • Global Impairment of the Ubiquitin-Proteasome System by Nuclear or Cytoplasmic Protein Aggregates Precedes Inclusion Body Formation
    Molecular Cell, Vol. 17, No. 3. (4 February 2005), pp. 351-365.
    by Eric J Bennett, Neil F Bence, Rajadas Jayakumar, Ron R Kopito
    posted to ups proteinfolding inclusions aggregation by inbetweener on 2008-09-15 21:11:34 as ***
  • A century-old debate on protein aggregation and neurodegeneration enters the clinic
    Nature, Vol. 443, No. 7113. (18 October 2006), pp. 774-779.
    by Peter T Lansbury, Hilal A Lashuel
    posted to therapy review proteinfolding neurodegeneration aggregation by inbetweener on 2008-09-15 00:03:55 as **
  • Polyglutamine neurodegeneration: protein misfolding revisited.
    Trends in neurosciences (6 September 2008)
    by Aislinn J J Williams, Henry L L Paulson
    posted to review proteinfolding polyglutamine aggregation by inbetweener on 2008-09-10 18:26:49 as **
  • Determining the roles of different chain fragments in recognition of immunoglobulin fold
    Protein Eng., Vol. 15, No. 1. (1 January 2002), pp. 13-19.
    by B Reva, A Kister, S Topiol, I Gelfand
    posted to immunoglobulin protein-structure proteinfolding by analogAI on 2005-11-29 05:47:58 as **
  • Evolutionary information for specifying a protein fold
    Nature, Vol. 437, No. 7058., pp. 512-518.
    by Michael Socolich, Steve W Lockless, William P Russ, Heather Lee, Kevin H Gardner, Rama Ranganathan
    posted to protein-structure proteinfolding by analogAI on 2005-11-16 19:01:01 as read along with 14 people and 5 groups ana barry lna bpb Einat balajis marcius gbart nirfriedman caporaso massivemayhem mingzhi bethbromley ca3295 structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
  • Simulating protein evolution in sequence and structure space.
    Curr Opin Struct Biol, Vol. 14, No. 2. (April 2004), pp. 202-207.
    by Y Xia, M Levitt
    posted to computer-simulation protein-sequence protein-structure proteinfolding by analogAI on 2005-12-21 05:11:20 as **** along with 10 people and 4 groups betainverse korakot mdimmic karbak rmj001 ana barry aalibes gbart insectopalo Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics Bioinformatics
  • Finding the fittest fold: using the evolutionary record to design new proteins.
    Cell, Vol. 122, No. 6. (23 September 2005), pp. 832-834.
    by RG Smock, LM Gierasch
    posted to caig protein-structure proteinfolding residue-covariation by analogAI on 2006-07-05 08:27:59 as read along with 2 people and 3 groups marcius caporaso biomedical-nlp BioinfoCIPF SGU-CIPF
  • notes The importance of loop length in the folding of an immunoglobulin domain
    Protein Engineering, Design and Selection, Vol. 17, No. 5. (1 May 2004), pp. 443-453.
    by Caroline F Wright, John Christodoulou, Christopher M Dobson, Jane Clarke
    posted to immunoglobulin protein-structure proteinfolding by analogAI on 2005-11-29 05:46:21 as *
  • notes The immunoglobulin fold family: sequence analysis and 3D structure comparisons.
    Protein Eng, Vol. 12, No. 7. (July 1999), pp. 563-571.
    by DM Halaby, A Poupon, J Mornon
    posted to immunoglobulin proteinfolding proteinrecognition by analogAI on 2005-11-29 05:49:42 as ** along with 1 person and 1 group stevanspringer FAB-lab
  • The protein folding network.
    J Mol Biol, Vol. 342, No. 1. (3 September 2004), pp. 299-306.
    by F Rao, A Caflisch
    posted to complexnetworks energylandscape proteinfolding unfoldedproteins by allmensch on 2006-07-06 14:07:42 as read along with 6 people and 1 group camster apaydin ruvido jlh64 nh Diego_Prada dbk-lab
  • Solution structure of a protein denatured state and folding intermediate
    Nature, Vol. 437, No. 7061., pp. 1053-1056.
    by TL Religa, JS Markson, U Mayor, SMV Freund, AR Fersht
    posted to proteinfolding unfoldedproteins by allmensch on 2006-08-16 11:07:27 as ** along with 1 person apaydin
  • Kinetic studies of protein folding using NMR spectroscopy.
    Nat Struct Biol, Vol. 5 Suppl (July 1998), pp. 504-507.
    by CM Dobson, PJ Hore
    posted to nmr proteinfolding by allmensch on 2006-06-20 10:42:09 as read
  • Protein folding and the organization of the protein topology universe.
    Trends Biochem Sci, Vol. 30, No. 1. (January 2005), pp. 13-19.
    by K Lindorff-Larsen, P Røgen, E Paci, M Vendruscolo, CM Dobson
    posted to proteinfolding by allmensch on 2007-05-23 14:00:21 as ** along with 2 people and 2 groups ana baaden structural_bioinformatics Bioinformatics
  • Phi-value analysis by molecular dynamics simulations of reversible folding.
    Proc Natl Acad Sci U S A, Vol. 102, No. 3. (18 January 2005), pp. 628-633.
    by G Settanni, F Rao, A Caflisch
    posted to proteinfolding transitionstate by allmensch on 2006-07-06 14:11:41 as read along with 2 people apaydin ruvido
  • Peptide folding simulations.
    Curr Opin Struct Biol, Vol. 13, No. 2. (April 2003), pp. 168-174.
    by S Gnanakaran, H Nymeyer, J Portman, KY Sanbonmatsu, AE García
    posted to md proteinfolding by allmensch on 2007-10-11 13:34:34 as read along with 2 people andreasauerwein fjc1
  • Chemical Theory and Computation Special Feature: Protein folding pathways from replica exchange simulations and a kinetic network model
    PNAS, Vol. 102, No. 19. (10 May 2005), pp. 6801-6806.
    by Michael Andrec, Anthony K Felts, Emilio Gallicchio, Ronald M Levy
    posted to proteinfolding replicaexchange by allmensch on 2006-06-13 08:49:57 as **** along with 1 person apaydin
  • From Levinthal to pathways to funnels.
    Nat Struct Biol, Vol. 4, No. 1. (January 1997), pp. 10-19.
    by KA Dill, HS Chan
    posted to proteinfolding by allmensch on 2006-07-03 15:10:18 as **** along with 1 person dgront
  • Protein folding and unfolding at atomic resolution.
    Cell, Vol. 108, No. 4. (22 February 2002), pp. 573-582.
    by AR Fersht, V Daggett
    posted to proteinfolding unfoldedproteins by allmensch on 2006-11-28 10:55:21 as ****
  • Convergence and sampling efficiency in replica exchange simulations of peptide folding in explicit solvent
    The Journal of Chemical Physics, Vol. 126, No. 1. (2007)
    by Xavier Periole, Alan E Mark
    posted to proteinfolding remd by allmensch on 2008-01-07 10:15:09 as ** along with 2 people daevans loison
  • Unfolded proteins and protein folding studied by NMR.
    Chem Rev, Vol. 104, No. 8. (August 2004), pp. 3607-3622.
    by HJ Dyson, PE Wright
    posted to nmr proteinfolding unfoldedproteins by allmensch on 2006-08-16 11:04:53 as **** along with 2 people ruvido yxue
  • Fundamental processes of protein folding: measuring the energetic balance between helix formation and hydrophobic interactions.
    Protein Sci, Vol. 15, No. 9. (September 2006), pp. 2062-2070.
    by W Xian, PJ Connolly, M Oslin, AC Hausrath, JJ Osterhout
    posted to proteinfolding by allmensch on 2006-09-28 16:16:50 as ****
  • Transition states for protein folding have native topologies despite high structural variability.
    Nat Struct Mol Biol, Vol. 11, No. 5. (May 2004), pp. 443-449.
    by K Lindorff-Larsen, M Vendruscolo, E Paci, CM Dobson
    posted to proteinfolding by allmensch on 2007-05-23 14:02:57 as ** along with 1 person thamelry
  • Studies of folding and misfolding using simplified models
    Current Opinion in Structural Biology, Vol. 16, No. 1. (February 2006), pp. 79-85.
    by Nikolay V Dokholyan
    posted to proteinfolding by allmensch on 2006-08-15 15:41:19 as **** along with 3 people apaydin choonpeng mtw
  • Replica exchange simulation of reversible folding/unfolding of the Trp-cage miniprotein in explicit solvent: on the structure and possible role of internal water.
    J Struct Biol, Vol. 157, No. 3. (March 2007), pp. 524-533.
    by D Paschek, H Nymeyer, AE García
    posted to explremd proteinfolding trp-cage by allmensch on 2007-10-11 13:39:10 as read
  • Peptide and protein folding and conformational equilibria: theoretical treatment of electrostatics and hydrogen bonding with implicit solvent models.
    Adv Protein Chem, Vol. 72 (2005), pp. 173-198.
    by W Im, J Chen, CL Brooks
    posted to proteinfolding by allmensch on 2007-03-21 12:38:05 as **
  • Replica exchange molecular dynamics simulations of amyloid peptide aggregation.
    J Chem Phys, Vol. 121, No. 21. (1 December 2004), pp. 10748-10756.
    by M Cecchini, F Rao, M Seeber, A Caflisch
    posted to md proteinfolding replicaexchange by allmensch on 2006-07-06 14:12:28 as ****
  • Biophysical constraints for protein structure prediction.
    J Proteome Res, Vol. 2, No. 1. (b 2003), pp. 37-42.
    by O Tcherkasskaya, EA Davidson, VN Uversky
    posted to proteinfolding by allmensch on 2006-06-06 16:20:20 as read
  • Statistical coil model of the unfolded state: Resolving the reconciliation problem.
    Proc Natl Acad Sci U S A (30 August 2005)
    by Abhishek K K Jha, Andrés Colubri, Karl F F Freed, Tobin R R Sosnick
    posted to proteinfolding unfoldedproteinstates by allmensch on 2008-07-30 17:27:10 as ** along with 2 people apaydin choonpeng
  • Transition State Contact Orders Correlate with Protein Folding Rates
    Journal of Molecular Biology, Vol. 352, No. 3. (23 September 2005), pp. 495-500.
    by Emanuele Paci, Kresten Lindorff-Larsen, Christopher M Dobson, Martin Karplus, Michele Vendruscolo
    posted to proteinfolding by allmensch on 2006-06-13 08:55:27 as **** along with 2 people and 2 groups ana RamuAnandakrishnan structural_bioinformatics Bioinformatics
  • Is there a unifying mechanism for protein folding?
    Trends Biochem Sci, Vol. 28, No. 1. (January 2003), pp. 18-25.
    by V Daggett, AR Fersht
    posted to proteinfolding by allmensch on 2006-07-03 15:42:18 as **** along with 4 people and 1 group Einat dgront rabio mirzazadeh structural_bioinformatics
  • Replica exchange molecular dynamics simulations of reversible folding
    The Journal of Chemical Physics, Vol. 119, No. 7. (2003), pp. 4035-4042.
    by Francesco Rao, Amedeo Caflisch
    posted to md proteinfolding replicaexchange by allmensch on 2006-07-10 12:47:35 as read
  • The Flory isolated-pair hypothesis is not valid for polypeptide chains: implications for protein folding.
    Proc Natl Acad Sci U S A, Vol. 97, No. 23. (7 November 2000), pp. 12565-12570.
    by RV Pappu, R Srinivasan, GD Rose
    posted to proteinfolding by allmensch on 2006-08-16 11:54:34 as ** along with 1 person ruvido
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