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Tag protein_nw [22 articles]

Recent papers classified by the tag protein_nw.
  • Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 September 2007), e214.eor.
    by Hailiang Huang, Bruno Jedynak, Joel S Bader
    posted to protein_nw protein_interaction_confidence by roys on 2008-12-01 18:51:11 as ** along with 1 person zwang
  • A direct comparison of protein interaction confidence assignment schemes
    BMC Bioinformatics, Vol. 7 (26 July 2006), 360.
    by Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker
    posted to protein_nw protein_interaction_confidence by roys on 2008-12-01 18:49:07 as ** along with 6 people and 1 group tmmurali lfriedl balajis gurkanbebek IbnBio iris_2001 kdl
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences (12 May 2008), 0708078105.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to human protein_nw proteome_comparison by roys on 2008-05-15 03:53:33 as ** along with 20 people and 1 group tharris zwang chrissp100 sanchezbuelna guhjy phoenixzxl tmmurali neils paolomarcatili mjoach xingxu Ema cabbagesofdoom balicea marck friendpine brianb Evangelia dragonrez bpcusack C. elegans / WormBase
  • Global alignment of multiple protein interaction networks with application to functional orthology detection
    Proceedings of the National Academy of Sciences, Vol. 105, No. 35. (2008), pp. 12763-12768.
    by Rohit Singh, Jinbo Xu, Bonnie Berger
    posted to protein_nw comparative_genomics by roys on 2008-09-03 00:33:52 as ** along with 4 people icq242500260 dakelley renatomilani bpcusack
  • Rintact: enabling computational analysis of molecular interaction data from the IntAct repository
    Bioinformatics (7 November 2007), btm518.
    by Tony Chiang, Nianhua Li, Sandra Orchard, Samuel Kerrien, Henning Hermjakob, Robert Gentleman, Wolfgang Huber
    posted to classification intact protein_nw by roys on 2007-11-08 06:51:25 as **
  • Unraveling Protein Networks with Power Graph Analysis
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108.
    by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
    posted to biological_networks network_motifs protein_nw by roys on 2008-07-26 21:04:28 as ** along with 20 people and 2 groups yyby jfr jiny aramesh2 AbnerCYH jmuhlich MatthiasReimann royerloic Ema lptolik kengg reyez tmmurali nuin Borelli askrajiv renatomilani stajich sebk rsantana Berkeley Mycology OPIG
  • Protein networks in disease
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 644-652.
    by Trey Ideker, Roded Sharan
    posted to protein_nw by roys on 2008-04-01 20:40:39 as ** along with 21 people kaarsinogen giovenko guhjy balicea tmmurali Borelli jwdietrich frohike bootsy nedwards mclarenv phoenixzxl brianb schuylrp jfr paolomarcatili gracio thomaskelder ptrobajo raiyar zwang
  • Organization of Physical Interactomes as Uncovered by Network Schemas
    PLoS Comput Biol, Vol. 4, No. 10. (24 October 2008), e1000203.
    by Eric Banks, Elena Nabieva, Bernard Chazelle, Mona Singh
    posted to protein_nw nw_schema modularity by roys on 2008-11-10 00:32:14 as ** along with 3 people marck grahamc chad_davis
  • Functional maps of protein complexes from quantitative genetic interaction data.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by S Bandyopadhyay, R Kelley, NJ Krogan, T Ideker
    posted to protein_nw genetic_nw by roys on 2008-10-20 00:20:06 as ** along with 4 people giovenko emmackinnon guhjy carlk
  • A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules.
    Science, Vol. 295, No. 5553. (11 January 2002), pp. 321-324.
    by AH Tong, B Drees, G Nardelli, GD Bader, B Brannetti, L Castagnoli, M Evangelista, S Ferracuti, B Nelson, S Paoluzi, M Quondam, A Zucconi, CW Hogue, S Fields, C Boone, G Cesareni
    posted to protein_nw by roys on 2008-02-17 22:51:14 as ** along with 5 people tomhebbron chad_davis balajis Evangelia carlk
  • Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 482-486.
    by H Ge, Z Liu, GM Church, M Vidal
    posted to phenotypic_correlation protein_nw by roys on 2008-05-05 00:55:58 as ** along with 12 people and 1 group lptolik Robinder BioGeek lfriedl wnpx mmt gespim bluto ruvido grahamc kintoki paolomarcatili kdl
  • Predicting co-complexed protein pairs from heterogeneous data.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by J Qiu, WS Noble
    posted to supervised_learning protein_nw networks biological_networks by roys on 2008-11-25 06:08:26 as ** along with 4 people bootsy carlk mingzhi penpen926
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
    posted to cancer human networks protein_nw subnw systems_biology by roys on 2007-11-16 23:07:24 as ** along with 21 people and 3 groups Zephyrus ggallone giovenko winterschlaefer isimpson ihpark bertelsen jfr kengg frohike mikaelhuss cjeans zwang cerami abhattac shikin oelemento ptrobajo dap5087 saman_vp verdicchio Jarman Lab Bioinformatics GeneGo
  • Alpha-helix stabilization by alanine relative to glycine: roles of polar and apolar solvent exposures and of backbone entropy.
    Proteins, Vol. 64, No. 3. (15 August 2006), pp. 769-778.
    by J López-Llano, LA Campos, J Sancho
    posted to imp_aminoacids protein_nw by roys on 2007-11-06 18:23:30 as **
  • Towards a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae.
    Mol Cell Proteomics (2 January 2007)
    by Sean R R Collins, Patrick Kemmeren, Xue-Chu C Zhao, Jack F F Greenblatt, Forrest Spencer, Frank C C Holstege, Jonathan S S Weissman, Nevan J J Krogan
    posted to protein_nw by roys on 2008-03-19 04:51:51 as ** along with 5 people and 1 group czeller nickluscombe grahamc csanford paolomarcatili EBI-regulation
  • Support Vector Machine based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs
    Bioinformatics (7 November 2007), btm527.
    by Md Shamim, Mohammad Anwaruddin, HA Nagarajaram
    posted to classification fold_prediction imp_aminoacids protein_nw by roys on 2007-11-08 05:48:08 as **
  • Predicting and Validating Protein Interactions Using Network Structure
    PLoS Comput Biol, Vol. 4, No. 7. (25 July 2008), e1000118.
    by Pao-Yang Chen, Charlotte M Deane, Gesine Reinert
    posted to protein_nw by roys on 2008-07-26 20:48:46 as ** along with 4 people icq242500260 phoenixzxl zwang mingzhi
  • Biological context networks: a mosaic view of the interactome
    Mol Syst Biol, Vol. 2 (28 November 2006)
    by John Rachlin, Dikla D Cohen, Charles Cantor, Simon Kasif
    posted to annotation context_sensitive protein_nw by roys on 2007-11-06 04:06:44 as ** along with 2 people massivemayhem mingzhi
  • Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Lukas Burger, Erik van Nimwegen
    posted to protein_nw by roys on 2008-03-18 05:38:01 as ** along with 11 people sjcockell kengg grahamc laughcry zwang biomcgary cabbagezs cdeane gjuggler phoenixzxl pansapiens
  • The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication
    Proceedings of the National Academy of Sciences (16 January 2008), 0707293105.
    by Aviva Presser, Michael B Elowitz, Manolis Kellis, Roy Kishony
    posted to comparative_genomics evolution gene_duplication protein_nw yeast by roys on 2008-01-17 19:30:58 as ** along with 4 people pradiptaray cjeans zwang phoenixzxl
  • Helix packing in polytopic membrane proteins: role of glycine in transmembrane helix association.
    Biophys J, Vol. 77, No. 3. (September 1999), pp. 1609-1618.
    by MM Javadpour, M Eilers, M Groesbeek, SO Smith
    posted to glycine imp_aminoacids protein_nw by roys on 2007-11-06 18:25:34 as **
  • From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions
    Mol Syst Biol, Vol. 4 (15 July 2008)
    by Igor Ulitsky, Tomer Shlomi, Martin Kupiec, Ron Shamir
    posted to clustering genetic_nw nw_modularity protein_nw by roys on 2008-08-04 03:13:25 as ** along with 2 people zwang ptrobajo
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