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Tag protein_interaction [69 articles]

Recent papers classified by the tag protein_interaction.
  • Axin: a master scaffold for multiple signaling pathways.
    Neurosignals, Vol. 13, No. 3. (n 2004), pp. 99-113.
    by W Luo, SC Lin
    posted to axin protein_interaction review by tibbitts on 2007-12-05 02:06:48 as ***
  • Casein kinase I and casein kinase II differentially regulate axin function in Wnt and JNK pathways.
    J Biol Chem, Vol. 277, No. 20. (17 May 2002), pp. 17706-17712.
    by Y Zhang, WJ Qiu, SC Chan, J Han, X He, SC Lin
    posted to axin beta_catenin jnk protein_interaction by tibbitts on 2007-12-05 01:43:33 as ****
  • The roles of APC and Axin derived from experimental and theoretical analysis of the Wnt pathway.
    PLoS Biol, Vol. 1, No. 1. (October 2003)
    by E Lee, A Salic, R Krüger, R Heinrich, MW Kirschner
  • Axin is a scaffold protein in TGF-[beta] signaling that promotes degradation of Smad7 by Arkadia
    The EMBO Journal, Vol. aop, No. current. (06 April 2006)
    by Wei Liu, Hongliang Rui, Jifeng Wang, Shuyong Lin, Ying He, Mingliang Chen, Qinxi Li, Zhiyun Ye, Suping Zhang, Siu C Chan, Ye-Guang Chen, Jiahuai Han, Sheng-Cai Lin
    posted to axin protein_interaction by tibbitts on 2007-12-05 02:26:32 as read along with 1 person guhjy
  • Large-scale identification of c-MYC-associated proteins using a combined TAP/MudPIT approach.
    Cell Cycle, Vol. 6, No. 2. (15 January 2007), pp. 205-217.
    by HB Koch, R Zhang, B Verdoodt, A Bailey, CD Zhang, JR Yates, A Menssen, H Hermeking
    posted to myc protein_interaction by tibbitts on 2007-11-24 02:22:56 as **
  • Axin utilizes distinct regions for competitive MEKK1 and MEKK4 binding and JNK activation.
    J Biol Chem, Vol. 278, No. 39. (26 September 2003), pp. 37451-37458.
    by W Luo, WW Ng, LH Jin, Z Ye, J Han, SC Lin
    posted to axin jnk protein_interaction by tibbitts on 2007-12-05 02:04:17 as **
  • The DIX domain protein coiled-coil-DIX1 inhibits c-Jun N-terminal kinase activation by Axin and dishevelled through distinct mechanisms.
    J Biol Chem, Vol. 279, No. 38. (17 September 2004), pp. 39366-39373.
    by CK Wong, W Luo, Y Deng, H Zou, Z Ye, SC Lin
    posted to axin jnk protein_interaction by tibbitts on 2007-12-05 01:57:03 as **
  • LRP6 transduces a canonical Wnt signal independently of Axin degradation by inhibiting GSK3's phosphorylation of beta-catenin.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 23. (10 June 2008), pp. 8032-8037.
    by CS Cselenyi, KK Jernigan, E Tahinci, CA Thorne, LA Lee, E Lee
    posted to axin beta_catenin degradation gsk3 protein_interaction by tibbitts on 2008-08-27 22:16:03 as read
  • Recruitment of adenomatous polyposis coli and β-catenin to axin-puncta
    Oncogene, Vol. aop, No. current.
    by MC Faux, JL Coates, B Catimel, S Cody, AHA Clayton, MJ Layton, AW Burgess
    posted to protein_interaction localization beta_catenin axin apc by tibbitts on 2008-10-21 02:10:57 as **
  • Differential molecular assemblies underlie the dual function of Axin in modulating the WNT and JNK pathways.
    J Biol Chem, Vol. 276, No. 34. (24 August 2001), pp. 32152-32159.
    by Y Zhang, WJ Qiu, DX Liu, SY Neo, X He, SC Lin
    posted to axin beta_catenin jnk protein_interaction by tibbitts on 2007-12-05 02:00:12 as ***
  • Axin contains three separable domains that confer intramolecular, homodimeric, and heterodimeric interactions involved in distinct functions.
    J Biol Chem, Vol. 280, No. 6. (11 February 2005), pp. 5054-5060.
    by W Luo, H Zou, L Jin, S Lin, Q Li, Z Ye, H Rui, SC Lin
    posted to axin protein_interaction by tibbitts on 2007-12-05 01:48:06 as ***
  • Differential requirement of MKK4 and MKK7 in JNK activation by distinct scaffold proteins.
    FEBS Lett, Vol. 581, No. 2. (23 January 2007), pp. 196-202.
    by H Zou, Q Li, SC Lin, Z Wu, J Han, Z Ye
    posted to axin jnk protein_interaction by tibbitts on 2007-12-05 02:25:54 as **
  • Axin stimulates p53 functions by activation of HIPK2 kinase through multimeric complex formation.
    EMBO J, Vol. 23, No. 23. (24 November 2004), pp. 4583-4594.
    by Y Rui, Z Xu, S Lin, Q Li, H Rui, W Luo, HM Zhou, PY Cheung, Z Wu, Z Ye, P Li, J Han, SC Lin
    posted to axin p53 protein_interaction by tibbitts on 2007-12-05 02:16:54 as ***
  • Axin forms a complex with MEKK1 and activates c-Jun NH(2)-terminal kinase/stress-activated protein kinase through domains distinct from Wnt signaling.
    J Biol Chem, Vol. 274, No. 49. (3 December 1999), pp. 35247-35254.
    by Y Zhang, SY Neo, X Wang, J Han, SC Lin
    posted to axin jnk protein_interaction by tibbitts on 2007-12-05 01:42:40 as ****
  • SUMO-1 modification of the C-terminal KVEKVD of Axin is required for JNK activation but has no effect on Wnt signaling.
    J Biol Chem, Vol. 277, No. 45. (8 November 2002), pp. 42981-42986.
    by HL Rui, E Fan, HM Zhou, Z Xu, Y Zhang, SC Lin
    posted to axin beta_catenin jnk protein_interaction by tibbitts on 2007-12-05 02:01:53 as ****
  • Crystal structure of a beta-catenin/axin complex suggests a mechanism for the beta-catenin destruction complex.
    Genes & development, Vol. 17, No. 22. (15 November 2003), pp. 2753-2764.
    by Y Xing, WK Clements, D Kimelman, W Xu
    posted to structure protein_interaction degradation beta_catenin axin apc by tibbitts on 2008-10-21 02:06:49 as **
  • Protein phosphatase 1 regulates assembly and function of the [beta]-catenin degradation complex
    The EMBO Journal, Vol. aop, No. current. (22 February 2007)
    by Wen Luo, Annita Peterson, Benjamin A Garcia, Gary Coombs, Bente Kofahl, Reinhart Heinrich, Jeffrey Shabanowitz, Donald F Hunt, Joseph H Yost, David M Virshup
    posted to axin beta_catenin degradation protein_interaction by tibbitts on 2008-02-13 21:18:29 as **
  • Axin and GSK3- control Smad3 protein stability and modulate TGF- signaling
    Genes Dev., Vol. 22, No. 1. (1 January 2008), pp. 106-120.
    by Xing Guo, Alejandro Ramirez, David S Waddell, Zhizhong Li, Xuedong Liu, Xiao-Fan Wang
  • Daxx cooperates with the Axin/HIPK2/p53 complex to induce cell death.
    Cancer Res, Vol. 67, No. 1. (1 January 2007), pp. 66-74.
    by Q Li, X Wang, X Wu, Y Rui, W Liu, J Wang, X Wang, YC Liou, Z Ye, SC Lin
    posted to apoptosis axin p53 protein_interaction by tibbitts on 2007-12-05 02:24:10 as **
  • WI-PHI: A weighted yeast interactome enriched for direct physical interactions.
    Proteomics (6 February 2007)
    by Lars Kiemer, Stefano Costa, Marius Ueffing, Gianni Cesareni
    posted to network protein_interaction by nicoleq on 2007-03-09 01:40:29 as *** along with 1 person chad_davis
  • Revealing static and dynamic modular architecture of the eukaryotic protein interaction network
    Mol Syst Biol, Vol. 3 (24 April 2007)
    by Kakajan Komurov, Michael White
  • PSIbase: a database of Protein Structural Interactome map (PSIMAP)
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2541-2543.
    by Sungsam Gong, Giseok Yoon, Insoo Jang, Dan Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, Jonghwa Bhak
    posted to database protein_interaction by medic0747 on 2007-01-24 13:57:33 as ** along with 1 person chad_davis
  • Improved prediction of protein-protein binding sites using a support vector machines approach.
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1487-1494.
    by JR Bradford, DR Westhead
  • The relationship between sequence and interaction divergence in proteins.
    J Mol Biol, Vol. 332, No. 5. (3 October 2003), pp. 989-998.
    by P Aloy, H Ceulemans, A Stark, RB Russell
  • Interaction network containing conserved and essential protein complexes in Escherichia coli
    Nature, Vol. 433, No. 7025. (03 February 2005), pp. 531-537.
    by Gareth Butland, Jose M Peregrin-Alvarez, Joyce Li, Wehong Yang, Xiaochun Yang, Veronica Canadien, Andrei Starostine, Dawn Richards, Bryan Beattie, Nevan Krogan, Michael Davey, John Parkinson, Jack Greenblatt, Andrew Emili
  • Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data.
    Proteins, Vol. 61, No. 1. (1 October 2005), pp. 21-35.
    by H Chen, HX Zhou
    posted to nmr protein_interaction by karbak on 2006-02-12 10:11:34 as ***
  • Probing the Extent of Randomness in Protein Interaction Networks
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000114.
    by Joseph Ivanic, Anders Wallqvist, Jaques Reifman
    posted to protein_interaction by jfr on 2008-09-29 15:30:40 as *** along with 2 people Ema kluck
  • UniHI: an entry gate to the human protein interactome.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by G Chaurasia, Y Iqbal, C Hänig, H Herzel, EE Wanker, ME Futschik
  • Discovery of protein interaction networks shared by diseases.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2007), pp. 76-87.
    by L Sam, Y Liu, J Li, C Friedman, YA Lussier
    posted to methodology protein_interaction by jfr on 2008-04-11 16:43:53 as ***
  • Human Proteinpedia enables sharing of human protein data
    Nature Biotechnology, Vol. 26, No. 2., pp. 164-167.
    by Suresh Mathivanan, Mukhtar Ahmed, Natalie G Ahn, Hainard Alexandre, Ramars Amanchy, Philip C Andrews, Joel S Bader, Brian M Balgley, Marcus Bantscheff, Keiryn L Bennett, Erik Björling, Blagoy Blagoev, Ron Bose, Samir K Brahmachari, Alma S Burlingame, Xosé R Bustelo, Gerard Cagney, Greg T Cantin, Helene L Cardasis, Julio E Celis, Raghothama Chaerkady, Feixia Chu, Philip A Cole, Catherine E Costello, Robert J Cotter, David Crockett, James P Delany, Angelo M De Marzo, Leroi V Desouza, Eric W Deutsch, Eric Dransfield, Gerard Drewes, Arnaud Droit, Michael J Dunn, Kojo Elenitoba-Johnson, Rob M Ewing, Jennifer Van Eyk, Vitor Faca, Jayson Falkner, Xiangming Fang, Catherine Fenselau, Daniel Figeys, Pierre Gagné, Cecilia Gelfi, Kris Gevaert, Jeffrey M Gimble, Florian Gnad, Renu Goel, Pavel Gromov, Samir M Hanash, William S Hancock, HC Harsha, Gerald Hart, Faith Hays, Fuchu He, Prashantha Hebbar, Kenny Helsens, Heiko Hermeking, Winston Hide, Karin Hjernø, Denis F Hochstrasser, Oliver Hofmann, David M Horn, Ralph H Hruban, Nieves Ibarrola, Peter James, Ole N Jensen, Pia H Jensen, Peter Jung, Kumaran Kandasamy, Indu Kheterpal, Reiko F Kikuno, Ulrike Korf, Roman Körner, Bernhard Kuster, Min-Seok Kwon, Hyoung-Joo Lee, Young-Jin Lee, Michael Lefevre, Minna Lehvaslaiho, Pierre Lescuyer, Fredrik Levander, Megan S Lim, Christian Löbke, Joseph A Loo, Matthias Mann, Lennart Martens, Juan Martinez-Heredia, Mark Mccomb, James Mcredmond, Alexander Mehrle, Rajasree Menon, Christine A Miller, Harald Mischak, Sujatha S Mohan, Riaz Mohmood, Henrik Molina, Michael F Moran, James D Morgan, Robert Moritz, Martine Morzel, David C Muddiman, Anuradha Nalli, Daniel J Navarro, Thomas A Neubert, Osamu Ohara, Rafael Oliva, Gilbert S Omenn, Masaaki Oyama, Young-Ki Paik, Kyla Pennington, Rainer Pepperkok, Balamurugan Periaswamy, Emanuel F Petricoin, Guy G Poirier, Keshava TS Prasad, Samuel O Purvine, Abdul B Rahiman, Prasanna Ramachandran, YL Ramachandra, Robert H Rice, Jens Rick, Ragna H Ronnholm, Johanna Salonen, Jean-Charles Sanchez, Thierry Sayd, Beerelli Seshi, Kripa Shankari, Shi J Sheng, Vivekananda Shetty, K Shivakumar, Richard J Simpson, Ravi Sirdeshmukh, Michael KW Siu, Jeffrey C Smith, Richard D Smith, David J States, Sumio Sugano, Matthew Sullivan, Giulio Superti-Furga, Maarit Takatalo, Visith Thongboonkerd, Jonathan C Trinidad, Mathias Uhlen, Joël Vandekerckhove, Julian Vasilescu, Timothy D Veenstra, José-Manuel Vidal-Taboada, Mauno Vihinen, Robin Wait, Xiaoyue Wang, Stefan Wiemann, Billy Wu, Tao Xu, John R Yates, Jun Zhong, Ming Zhou, Yunping Zhu, Petra Zurbig, Akhilesh Pandey
  • Protein interactions and disease: computational approaches to uncover the etiology of diseases
    Brief Bioinform (16 July 2007), bbm031.
    by Maricel G Kann
  • In Search of the Biological Significance of Modular Structures in Protein Networks
    PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e107.
    by Zhi Wang, Jianzhi Zhang
  • Evaluation of clustering algorithms for protein-protein interaction networks
    BMC Bioinformatics, Vol. 7 (06 November 2006), 488.
    by Sylvain Brohee, Jacques van Helden
  • Walking the Interactome for Prioritization of Candidate Disease Genes
    The American Journal of Human Genetics, Vol. In Press, Corrected Proof
    by Sebastian Kohler, Sebastian Bauer, Denise Horn, Peter N Robinson
  • A Gibbs sampler for the identification of gene expression and network connectivity consistency.
    Bioinformatics (23 October 2006)
    by Mark P P Brynildsen, Linh M M Tran, James C C Liao
    posted to integration network protein_interaction by jfr on 2008-01-09 12:09:17 as *** along with 1 person gpalidwor
  • Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality.
    PLoS computational biology, Vol. 4, No. 8. (August 2008)
  • Characterization of microRNA-regulated protein-protein interaction network.
    Proteomics, Vol. 8, No. 10. (19 May 2008), pp. 1975-1979.
    by Chun-Wei W Hsu, Hsueh-Fen F Juan, Hsuan-Cheng C Huang
  • Identifying functional modules in protein-protein interaction networks: an integrated exact approach
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i223-231.
    by Marcus T Dittrich, Gunnar W Klau, Andreas Rosenwald, Thomas Dandekar, Tobias Muller
  • Coverage and error models of protein-protein interaction data by directed graph analysis
    Genome Biology, Vol. 8 (10 September 2007), R186.
    by Tony Chiang, Denise Scholtens, Deepayan Sarkar, Robert Gentleman, Wolfgang Huber
  • Growing functional modules from a seed protein via integration of protein interaction and gene expression data
    BMC Bioinformatics, Vol. 8 (23 October 2007), 408.
    by Ioannis A Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos
  • Comparison of Human Protein-Protein Interaction Maps.
    Bioinformatics (19 January 2007)
    by Matthias E E Futschik, Gautam Chaurasia, Hanspeter Herzel
  • Protein networks in disease
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 644-652.
    by Trey Ideker, Roded Sharan
  • Large-scale mapping of human protein-protein interactions by mass spectrometry.
    Mol Syst Biol, Vol. 3 (2007)
    by RM Ewing, P Chu, F Elisma, H Li, P Taylor, S Climie, L McBroom-Cerajewski, MD Robinson, L O'Connor, M Li, R Taylor, M Dharsee, Y Ho, A Heilbut, L Moore, S Zhang, O Ornatsky, YV Bukhman, M Ethier, Y Sheng, J Vasilescu, M Abu-Farha, JP Lambert, HS Duewel, II Stewart, B Kuehl, K Hogue, K Colwill, K Gladwish, B Muskat, R Kinach, SL Adams, MF Moran, GB Morin, T Topaloglou, D Figeys
  • Making the most of high-throughput protein-interaction data
    Genome Biology, Vol. 8 (02 November 2007), 112.
    by Robert Gentleman, Wolfgang Huber
    posted to network protein_interaction review by jfr on 2008-01-09 11:41:50 as read along with 2 people cerca cjeans
  • High-Quality Binary Protein Interaction Map of the Yeast Interactome Network
    Science (21 August 2008), 1158684.
    by Haiyuan Yu, Pascal Braun, Muhammed A Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amelie Dricot, Alexei Vazquez, Ryan R Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E Hudson, Juyong Park, Xiaofeng Xin, Michael E Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P Roth, Albert-Laszlo Barabasi, Jan Tavernier, David E Hill, Marc Vidal
  • Towards a proteome-scale map of the human protein–protein interaction network
    Nature (28 September 2005)
    by Jean-François Rual, Kavitha Venkatesan, Tong Hao, Tomoko Hirozane-Kishikawa, Amélie Dricot, Ning Li, Gabriel F Berriz, Francis D Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou, Niels Klitgord, Christophe Simon, Mike Boxem, Stuart Milstein, Jennifer Rosenberg, Debra S Goldberg, Lan V Zhang, Sharyl L Wong, Giovanni Franklin, Siming Li, Joanna S Albala, Janghoo Lim, Carlene Fraughton, Estelle Llamosas, Sebiha Cevik, Camille Bex, Philippe Lamesch, Robert S Sikorski, Jean Vandenhaute, Huda Y Zoghbi, Alex Smolyar, Stephanie Bosak, Reynaldo Sequerra, Lynn Doucette-Stamm, Michael E Cusick, David E Hill, Frederick P Roth, Marc Vidal
  • A novel functional module detection algorithm for protein-protein interaction network
    Algorithms for Molecular Biology, Vol. 1 (05 December 2006), 24.
    by Woochang Hwang, Young-Rae Cho, Aidong Zhang, Murali Ramanathan
  • Detecting functional modules in the yeast proteinprotein interaction network
    Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2283-2290.
  • Construction of a cancer-perturbed protein-protein interaction network for discovery of apoptosis drug targets
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Liang H Chu, Bor S Chen
  • Modular organization of protein interaction networks.
    Bioinformatics (8 November 2006)
    by Feng Luo, Yunfeng Yang, Chin-Fu F Chen, Roger Chang, Jizhong Zhou, Richard H H Scheuermann
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