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Tag protein_docking [16 articles]

Recent papers classified by the tag protein_docking.
  • Accelerating and Focusing Protein-Protein Docking Correlations Using Multi-Dimensional Rotational FFT Generating Functions.
    Bioinformatics (Oxford, England) (30 June 2008)
    by David W W Ritchie, Dima Kozakov, Sandor Vajda
    posted to protein_docking by rabio on 2008-08-25 16:47:23 as ** along with 1 person reyez
  • Inherent limitations in proteinprotein docking procedures
    Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 421-426.
    by Kowalsman, Noga, Eisenstein, Miriam
    posted to protein_docking by rabio on 2007-03-20 11:56:42 as ** along with 2 people bicko chad_davis
  • Atomic Resolution Modeling of the Ferredoxin:[FeFe] Hydrogenase Complex from Chlamydomonas reinhardtii
    Biophys. J. (27 July 2007), biophysj.107.108589.
    by Christopher H Chang, Paul W King, Maria L Ghirardi, Kwiseon Kim
    posted to protein_docking protein_design hydrogenase by msuarezdiez on 2008-11-25 12:33:09 as **
  • Solvated docking: introducing water into the modelling of biomolecular complexes.
    Bioinformatics (9 August 2006)
    by Aalt D J D van Dijk, Alexandre M J J M Bonvin
    posted to water protein_docking protein_design by msuarezdiez on 2008-09-01 13:32:10 as ** along with 5 people and 1 group arlam BragilMassoud bicko jteyra Lombardo_7 group
  • Modelling repressor proteins docking to DNA.
    Proteins, Vol. 33, No. 4. (1 December 1998), pp. 535-549.
    by P Aloy, G Moont, HA Gabb, E Querol, FX Aviles, MJ Sternberg
    posted to protein_docking structural_bioinformatics by jwm on 2007-09-17 15:33:40 as ** along with 1 person and 2 groups bpagano Radiation_Damage Stressosome
  • Modelling protein docking using shape complementarity, electrostatics and biochemical information
    Journal of Molecular Biology, Vol. 272, No. 1. (12 September 1997), pp. 106-120.
    by Henry A Gabb, Richard M Jackson, Michael J Sternberg
    posted to protein_docking structural_bioinformatics by jwm on 2007-09-17 15:40:25 as ** along with 7 people and 3 groups bicko yongzhao ima ffranca cjeans selrac kintoki Radiation_Damage Stressosome TSRI_MGL
  • ZDOCK: an initial-stage protein-docking algorithm.
    Proteins, Vol. 52, No. 1. (1 July 2003), pp. 80-87.
    by R Chen, L Li, Z Weng
    posted to protein_docking structural_bioinformatics by jwm on 2006-05-25 13:46:23 as ** along with 4 people and 2 groups bicko ffranca gruppo selrac Radiation_Damage Stressosome
  • M-ZDOCK: a grid-based approach for Cn symmetric multimer docking
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1472-1478.
    by Brian Pierce, Weiwei Tong, Zhiping Weng
    posted to docking protein_docking by jwm on 2006-07-17 21:21:29 as ** along with 1 person and 2 groups bicko Radiation_Damage Stressosome
  • Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques.
    Proc Natl Acad Sci U S A, Vol. 89, No. 6. (15 March 1992), pp. 2195-2199.
    by E Katchalski-Katzir, I Shariv, M Eisenstein, AA Friesem, C Aflalo, IA Vakser
    posted to protein_docking structural_bioinformatics xtal_methods xtal_software by jwm on 2006-07-08 11:47:27 as ** along with 8 people and 2 groups tjimenez chad_davis ima j3xucite kazemi Ema LamBras timg Radiation_Damage Stressosome
  • Use of pair potentials across protein interfaces in screening predicted docked complexes.
    Proteins, Vol. 35, No. 3. (15 May 1999), pp. 364-373.
    by G Moont, HA Gabb, MJ Sternberg
    posted to protein_docking structural_bioinformatics by jwm on 2007-09-17 14:50:05 as ** along with 3 people and 2 groups bicko chaleil selrac Radiation_Damage Stressosome
  • Modeling supra-molecular helices: extension of the molecular surface recognition algorithm and application to the protein coat of the tobacco mosaic virus.
    J Mol Biol, Vol. 266, No. 1. (14 February 1997), pp. 135-143.
    by M Eisenstein, I Shariv, G Koren, AA Friesem, E Katchalski-Katzir
    posted to protein_docking by jwm on 2006-10-19 14:08:40 as ** along with 2 groups Radiation_Damage Stressosome
  • ZRANK: reranking protein docking predictions with an optimized energy function.
    Proteins, Vol. 67, No. 4. (1 June 2007), pp. 1078-1086.
    by B Pierce, Z Weng
    posted to protein_docking structural_bioinformatics by jwm on 2007-09-17 17:38:47 as ** along with 1 person and 2 groups bicko Radiation_Damage Stressosome
  • Shape complementarity at protein/protein interfaces.
    J Mol Biol, Vol. 234, No. 4. (20 December 1993), pp. 946-950.
    by MC Lawrence, PM Colman
    posted to ccp4 docking protein_docking structural_bioinformatics xtal_methods xtal_software by jwm on 2007-08-07 13:35:44 as ** along with 2 people and 2 groups higueruelo kintoki Radiation_Damage Stressosome
  • RDOCK: refinement of rigid-body protein docking predictions.
    Proteins, Vol. 53, No. 3. (15 November 2003), pp. 693-707.
    by L Li, R Chen, Z Weng
    posted to protein_docking structural_bioinformatics by jwm on 2006-05-25 13:47:23 as ** along with 1 person and 2 groups selrac Radiation_Damage Stressosome
  • Fast rotational matching of rigid bodies by fast Fourier transform acceleration of five degrees of freedom.
    Acta Crystallogr D Biol Crystallogr, Vol. 59, No. Pt 8. (August 2003), pp. 1371-1376.
    by JA Kovacs, P Chacón, Y Cong, E Metwally, W Wriggers
    posted to docking protein_docking by jwm on 2006-07-10 14:08:59 as ** along with 1 person and 2 groups tjimenez Radiation_Damage Stressosome
  • Ten thousand interactions for the molecular biologist
    Nat Biotech, Vol. 22, No. 10. (October 2004), pp. 1317-1321.
    by Patrick Aloy, Robert B Russell
    posted to protein_docking docking by jwm on 2007-02-05 13:49:13 as ** along with 10 people and 2 groups baaden bicko chad_davis dullhunk dgront drastic ruvido Evangelia higueruelo timg Radiation_Damage Stressosome
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