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Tag protein-stability [37 articles]

Recent papers classified by the tag protein-stability.
  • An amino acid has two sides: a new 2D measure provides a different view of solvent exposure.
    Proteins, Vol. 59, No. 1. (1 April 2005), pp. 38-48.
    by T Hamelryck
    posted to protein-stability solvent-exposure by massivemayhem on 2007-05-03 10:20:50 as ** along with 3 people karbak nickolay gisle
  • Prediction of protein stability changes for single-site mutations using support vector machines.
    Proteins, Vol. 62, No. 4. (21 December 2005), pp. 1125-1132.
    by Jianlin Cheng, Arlo Randall, Pierre Baldi
    posted to algorithm protein-stability snps software by massivemayhem on 2007-06-04 11:48:02 as ** along with 2 people bicko gisle
  • Selectional and Mutational Scope of Peptides Sequestering the Jun-Fos Coiled-Coil Domain.
    Journal of molecular biology (17 May 2008)
    by Urs B B Hagemann, Jody M M Mason, Kristian M M Müller, Katja M M Arndt
    posted to coiled-coil protein-engineering protein-stability by kevinchannon on 2008-07-14 10:00:54 as read along with 2 people kgutwin marck
  • Investigation of Cation-π Interactions in Biological Systems
    J. Am. Chem. Soc. (29 August 2008)
    by Ronghu Wu, Terry B Mcmahon
    posted to cation-pi protein-folding protein-ligand-binding protein-stability protein-structure by kevinchannon on 2008-08-29 13:12:37 as read along with 3 people Lombardo_7 alexfuerstenberg paulschlesinger
  • Relating destabilizing regions to known functional sites in proteins
    BMC Bioinformatics, Vol. 8 (30 April 2007), 141.
    by Benoit H Dessailly, Marc F Lensink, Shoshana J Wodak
    posted to protein-stability function-prediction by Einat to the group structural_bioinformatics on 2007-05-25 11:28:43 as *****
  • Protein stability promotes evolvability
    PNAS, Vol. 103, No. 15. (11 April 2006), pp. 5869-5874.
    by Jesse D Bloom, Sy T Labthavikul, Christopher R Otey, Frances H Arnold
    posted to protein-stability evolution by Einat to the group structural_bioinformatics on 2007-04-04 15:24:17 as ** along with 10 people and 1 group rklancer Retchless lna penka cmm redelings BioNica Cristiano wilbur cdeane FAB-lab
  • Why highly expressed proteins evolve slowly.
    Proc Natl Acad Sci U S A (21 September 2005)
    by D Allan A Drummond, Jesse D D Bloom, Christoph Adami, Claus O O Wilke, Frances H H Arnold
    posted to protein_structure protein-stability folding evolution by Einat to the group structural_bioinformatics on 2007-04-04 15:21:31 as ** along with 14 people and 4 groups rklancer stevanspringer bjorns imouthesmp aprasad dayjm marcius xwbcn penka balabu malcook balicea RamuAnandakrishnan wilbur Nie FAB-lab BioinfoCIPF SGU-CIPF
  • The hydrophobic-staple motif and a role for loop-residues in [alpha]-helix stability and protein folding
    Nat Struct Mol Biol, Vol. 2, No. 5. (May 1995), pp. 380-385.
    by Victor Munoz, Francisco J Blanco, Luis Serrano
    posted to alpha-helix loops protein-stability by Einat to the group structural_bioinformatics on 2005-12-27 10:07:04 as **
  • Hydrogen bonding increases packing density in the protein interior
    Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 2. (2006), pp. 278-282.
    by David Schell, Jerry Tsai, Martin J Scholtz, Nick C Pace
    posted to hydrogen-bonds protein-stability by Einat to the group structural_bioinformatics on 2007-02-18 13:03:27 as ** along with 1 person cat_worth
  • Structural determinants of the rate of protein evolution in yeast.
    Mol Biol Evol, Vol. 23, No. 9. (September 2006), pp. 1751-1761.
    by JD Bloom, DA Drummond, FH Arnold, CO Wilke
    posted to protein_structure protein-stability evolution by Einat to the group structural_bioinformatics on 2007-04-04 15:27:56 as **
  • Destruction of long-range interactions by a single mutation in lysozyme.
    Proc Natl Acad Sci U S A (26 March 2007)
    by Ruhong Zhou, Maria Eleftheriou, Ajay K Royyuru, Bruce J J Berne
    posted to protein_structure protein-stability folding_nucleation centrality by Einat to the group structural_bioinformatics on 2007-04-02 14:44:05 as *** along with 3 people allmensch choonpeng gisle
  • Stabilization centers in proteins: identification, characterization and predictions.
    J Mol Biol, Vol. 272, No. 4. (3 October 1997), pp. 597-612.
    by Z Dosztányi, A Fiser, I Simon
    posted to protein-stability stabilization-centers by Einat to the group structural_bioinformatics on 2005-11-07 09:48:59 as read along with 1 person analogAI
  • A flexible approach for understanding protein stability.
    FEBS Lett, Vol. 576, No. 3. (22 October 2004), pp. 468-476.
    by DR Livesay, S Dallakyan, GG Wood, DJ Jacobs
    posted to dcm protein-flexibility protein-stability by Einat to the group structural_bioinformatics on 2005-12-21 11:12:41 as ** along with 3 people radestock lna aqeel
  • Physical Origins of Protein Superfamilies.
    J Mol Biol (6 February 2006)
    by Konstantin B B Zeldovich, Igor N N Berezovsky, Eugene I I Shakhnovich
    posted to evolution folds protein-families protein-stability by Einat to the group structural_bioinformatics on 2006-05-07 08:49:56 as ** along with 3 people and 2 groups marcius laurabailey happy_manatee BioinfoCIPF SGU-CIPF
  • Low-throughput model design of protein folding inhibitors.
    Proteins (12 February 2007)
    by R A A Broglia, G Tiana, L Sutto, D Provasi, V Perelli
    posted to protein-stability by Einat to the group structural_bioinformatics on 2007-02-18 12:40:44 as **
  • Configurational entropy elucidates the role of salt-bridge networks in protein thermostability.
    Protein Sci, Vol. 16, No. 7. (July 2007), pp. 1349-1359.
    by JH Missimer, MO Steinmetz, R Baron, FK Winkler, RA Kammerer, X Daura, WF van Gunsteren
    posted to protein-stability by choonpeng on 2007-09-04 13:16:27 as read along with 1 person Diego_Prada
  • Aromatic-aromatic interaction: a mechanism of protein structure stabilization.
    Science, Vol. 229, No. 4708. (5 July 1985), pp. 23-28.
    by SK Burley, GA Petsko
    posted to protein-stability by choonpeng on 2007-03-16 16:28:16 as read along with 1 person bicko
  • Amyloid Fibrils of the HET-s(218-289) Prion Form a beta Solenoid with a Triangular Hydrophobic Core
    Science, Vol. 319, No. 5869. (14 March 2008), pp. 1523-1526.
    by Christian Wasmer, Adam Lange, Helene Van Melckebeke, Ansgar B Siemer, Roland Riek, Beat H Meier
    posted to protein-stability by choonpeng on 2008-06-08 05:57:23 as read along with 2 people krapnik rph
  • Role of structural determinants in folding of the sandwich-like protein Pseudomonas aeruginosa azurin.
    Proc Natl Acad Sci U S A, Vol. 102, No. 11. (15 March 2005), pp. 3984-3987.
    by CJ Wilson, P Wittung-Stafshede
    posted to folding-nucleus protein-stability by choonpeng on 2008-03-09 03:38:30 as read
  • From the Cover: Hierarchies, multiple energy barriers, and robustness govern the fracture mechanics of alpha-helical and beta-sheet protein domains
    Proceedings of the National Academy of Sciences, Vol. 104, No. 42. (16 October 2007), pp. 16410-16415.
    by Theodor Ackbarow, Xuefeng Chen, Sinan Keten, Markus J Buehler
    posted to force-probe-md protein-organization protein-stability by choonpeng on 2007-10-31 09:00:49 as read along with 1 person cactus
  • Protein thermal stability: The role of protein structure and aqueous environment.
    Arch Biochem Biophys (6 August 2007)
    by Eugenia Pechkova, Victor Sivozhelezov, Claudio Nicolini
    posted to protein-stability solvent-effects by choonpeng on 2007-09-19 10:16:57 as ***
  • Protein stabilization by salt bridges: concepts, experimental approaches and clarification of some misunderstandings.
    J Mol Recognit, Vol. 17, No. 1. (b 2004), pp. 1-16.
    by HR Bosshard, DN Marti, I Jelesarov
    posted to protein-stability by choonpeng on 2007-09-04 13:10:10 as ***
  • Statistical characterization of salt bridges in proteins.
    Proteins, Vol. 60, No. 4. (1 September 2005), pp. 732-739.
    by JN Sarakatsannis, Y Duan
    posted to protein-stability by choonpeng on 2007-09-04 11:20:17 as ***
  • Disruption of an intermonomer salt bridge in the p53 tetramerization domain results in an increased propensity to form amyloid fibrils
    Protein Sci, Vol. 14, No. 12. (1 December 2005), pp. 2993-3003.
    by Charles Galea, Prentice Bowman, Richard W Kriwacki
    posted to protein-stability by choonpeng on 2008-03-26 03:06:16 as ***
  • Crosstalk between the Protein Surface and Hydrophobic Core in a Core-swapped Fibronectin Type III Domain
    Journal of Molecular Biology, Vol. 375, No. 2. (11 January 2008), pp. 560-571.
    by Kate S Billings, Robert B Best, Trevor J Rutherford, Jane Clarke
    posted to protein-folding protein-stability by choonpeng on 2008-03-05 09:38:37 as ***
  • Aromatic-aromatic interactions and protein stability : Investigation by double-mutant cycles
    Journal of Molecular Biology, Vol. 218, No. 2. (20 March 1991), pp. 465-475.
    by Luis Serrano, Mark Bycroft, Alan R Fersht
    posted to protein-stability by choonpeng on 2006-12-02 02:43:43 as read
  • Amino-acid interactions in psychrophiles, mesophiles, thermophiles, and hyperthermophiles: Insights from the quasi-chemical approximation.
    Protein Sci, Vol. 16, No. 9. (September 2007), pp. 1887-1895.
    by RA Goldstein
    posted to protein-stability by choonpeng on 2007-09-19 10:14:40 as read along with 2 people gisle cdeane
  • Implementation of π-π interactions in molecular dynamics simulation
    Journal of Computational Chemistry, Vol. 28, No. 6. (2007), pp. 1091-1099.
    by Hitomi Yuki, Yoshikazu Tanaka, Masayuki Hata, Hidenori Ishikawa, Saburo Neya, Tyuji Hoshino
    posted to methodology protein-stability by choonpeng on 2007-03-04 15:18:04 as read along with 1 person jwagoner
  • Molecular Crowding Inhibits Intramolecular Breathing Motions in Proteins
    Journal of Molecular Biology, Vol. 375, No. 2. (11 January 2008), pp. 529-546.
    by Lee Makowski, Diane J Rodi, Suneeta Mandava, David D Minh, David B Gore, Robert F Fischetti
    posted to experimental protein-interaction protein-stability by choonpeng on 2007-12-08 14:11:05 as *** along with 1 person operon
  • Structure networks of <I>E. coli</I> glutaminyl-tRNA synthetase: Effects of ligand binding
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by R Sathyapriya, Saraswathi Vishveshwara
    posted to protein-interaction protein-stability by choonpeng on 2007-05-21 07:33:06 as **** along with 1 person naitsabes
  • Aromatic clusters: a determinant of thermal stability of thermophilic proteins
    Protein Eng., Vol. 13, No. 11. (1 November 2000), pp. 753-761.
    by N Kannan, S Vishveshwara
    posted to protein-stability by choonpeng on 2006-12-02 03:44:51 as read along with 2 people and 2 groups jwm gisle Radiation_Damage Stressosome
  • Temperature Softening of a Protein in Single-molecule Experiments
    Journal of Molecular Biology, Vol. 354, No. 2. (25 November 2005), pp. 497-503.
    by Michael Schlierf, Matthias Rief
    posted to protein-stability by choonpeng on 2007-03-14 13:16:14 as read
  • Aromatic-aromatic and proline-aromatic interactions in endomorphin-1 and endomorphin-2
    European Journal of Medicinal Chemistry, Vol. 40, No. 7. (July 2005), pp. 674-686.
    by Balazs Leitgeb, Geza Toth
    posted to protein-stability by choonpeng on 2006-10-17 01:49:17 as read
  • A network representation of protein structures: implications for protein stability.
    Biophys J, Vol. 89, No. 6. (December 2005), pp. 4159-4170.
    by KV Brinda, S Vishveshwara
    posted to protein-organization protein-stability by choonpeng on 2006-12-02 03:48:58 as read along with 3 people aalibes lna naitsabes
  • Strength and co-operativity of contributions of surface salt bridges to protein stability
    Journal of Molecular Biology, Vol. 216, No. 4. (20 December 1990), pp. 1031-1044.
    by Amnon Horovitz, Luis Serrano, Boaz Avron, Mark Bycroft, Alan R Fersht
    posted to protein-stability by choonpeng on 2007-09-04 11:13:38 as ***
  • Specificity grafting of human antibody frameworks selected from a phage display library: generation of a highly stable humanized anti-CD22 single-chain Fv fragment
    Protein Eng., Vol. 16, No. 10. (1 October 2003), pp. 753-759.
    by Jurgen Krauss, Michaela A Arndt, Andrew C Martin, Huaitian Liu, Susanna M Rybak
    posted to protein-engineering protein-stability by analogAI on 2006-08-22 20:37:14 as **
  • Stability improvement of antibodies for extracellular and intracellular applications: CDR grafting to stable frameworks and structure-based framework engineering.
    Methods, Vol. 34, No. 2. (October 2004), pp. 184-199.
    by S Ewert, A Honegger, A Plückthun
    posted to cdr immunoglobulin protein-engineering protein-stability protein-structure residue-covariation review-article by analogAI on 2006-06-03 07:07:31 as **
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