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Tag protein-protein-interactions [49 articles]

Recent papers classified by the tag protein-protein-interactions.
  • BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways.
    Bioinformatics, Vol. 16, No. 5. (May 2000), pp. 465-477.
    by GD Bader, CW Hogue
    posted to database protein-protein-interactions by yas on 2007-04-20 09:16:38 as ** along with 3 people and 1 group blackbart Evangelia acarbo T_lab
  • Towards zoomable multidimensional maps of the cell
    Nature Biotechnology, Vol. 25, No. 5. (04 May 2007), pp. 547-554.
    by Zhenjun Hu, Joe Mellor, Jie Wu, Minoru Kanehisa, Joshua M Stuart, Charles Delisi
    posted to protein-protein-interactions systems-biology visualization by yas on 2007-11-02 03:14:40 as ** along with 10 people tmmurali kuhn cmmorel balajis thomaskelder dullhunk guhjy AlexanderPico carlk Borelli
  • Modeling cellular machinery through biological network comparison
    Nature Biotechnology, Vol. 24, No. 4. (06 April 2006), pp. 427-433.
    by Roded Sharan, Trey Ideker
    posted to network-analysis protein-function-prediction protein-protein-interactions by yas on 2007-05-22 06:30:37 as ** along with 19 people and 2 groups cswinburne kaarsinogen isimpson tmmurali kuhn tuck balajis wnpx ma_ko gurkanbebek koller gcalda grahamc massivemayhem karfunkel mingzhi vietanh0 cdeane carlk T_lab ParkinsonLab_at_MaRS
  • A domain-based approach to predict protein-protein interactions
    BMC Bioinformatics, Vol. 8 (13 June 2007), 199.
    by Mudita Singhal, Haluk Resat
    posted to protein-protein-interactions by yas on 2007-07-29 08:49:38 as ** along with 3 people and 2 groups grahamc phoenixzxl carlk T_lab ParkinsonLab_at_MaRS
  • A text-mining analysis of the human phenome
    European Journal of Human Genetics, Vol. aop, No. current.
    by Marc A van Driel, Jorn Bruggeman, Gert Vriend, Han G Brunner, Jack AM Leunissen,
    posted to protein-protein-interactions text-mining by yas on 2007-04-30 09:42:25 as ** along with 3 people and 3 groups jiny guhjy dejori T_lab ic4 generif_paper
  • Discovering patterns to extract protein-protein interactions from full texts.
    Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3604-3612.
    by M Huang, X Zhu, Y Hao, DG Payan, K Qu, M Li
    posted to information-extraction protein-protein-interactions by yas on 2005-09-29 13:52:03 as read along with 3 people and 2 groups irenas davidandrzej natsu dbk-lab T_lab
  • The Biomolecular Interaction Network Database and related tools 2005 update.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by C Alfarano, CE Andrade, K Anthony, N Bahroos, M Bajec, K Bantoft, D Betel, B Bobechko, K Boutilier, E Burgess, K Buzadzija, R Cavero, C D'Abreo, I Donaldson, D Dorairajoo, MJ Dumontier, MR Dumontier, V Earles, R Farrall, H Feldman, E Garderman, Y Gong, R Gonzaga, V Grytsan, E Gryz, V Gu, E Haldorsen, A Halupa, R Haw, A Hrvojic, L Hurrell, R Isserlin, F Jack, F Juma, A Khan, T Kon, S Konopinsky, V Le, E Lee, S Ling, M Magidin, J Moniakis, J Montojo, S Moore, B Muskat, I Ng, JP Paraiso, B Parker, G Pintilie, R Pirone, JJ Salama, S Sgro, T Shan, Y Shu, J Siew, D Skinner, K Snyder, R Stasiuk, D Strumpf, B Tuekam, S Tao, Z Wang, M White, R Willis, C Wolting, S Wong, A Wrong, C Xin, R Yao, B Yates, S Zhang, K Zheng, T Pawson, BF Ouellette, CW Hogue
    posted to database protein-protein-interactions by yas on 2007-04-20 09:20:56 as ** along with 6 people and 3 groups alaninmcr balajis zlu frohike dagmar dragonrez T_lab dIEMoSIRIS compneur
  • SCOPPI: a structural classification of protein-protein interfaces.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by C Winter, A Henschel, WK Kim, M Schroeder
    posted to structure protein-protein-interactions interface by sjcockell on 2008-11-20 08:50:27 as ** along with 8 people and 4 groups ana kuhn bicko chad_davis marcius choonpeng Evangelia kintoki structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • IntNetDB v1.0: An integrated protein-protein interaction network database generated by a probabilistic model
    BMC Bioinformatics, Vol. 7 (18 November 2006), 508.
    by Kai Xia, Dong Dong, Jing-Dong J Han
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:43:44 as ** along with 3 people wnpx cdallett maralena
  • Systematic interpretation of genetic interactions using protein networks
    Nature Biotechnology, Vol. 23, No. 5. (05 May 2005), pp. 561-566.
    by Ryan Kelley, Trey Ideker
    posted to systems-biology protein-protein-interactions by nedwards on 2008-10-02 16:31:16 as ** along with 14 people and 2 groups lptolik okarsligil tuck balajis wnpx nirfriedman nickluscombe mmt koller massivemayhem patrycjam patrycja_missiuro mingzhi carlk Bioinformatics EBI-regulation
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to protein-protein-interactions systems-biology by nedwards on 2008-05-09 16:38:15 as ** along with 40 people cfelipesp orahcio rcrane kubyaddi pbull gtgt15 Ema jago cmor balicea kengg jjray soramame_0518 deanmalmgren briordan hryk tny AbnerCYH cactus tmmurali akshat bryanhughes gagliol margaritis guhjy craigwilson06 cmmorel eyliu markusd elsantosneto pinney i-stevenson fbaroni apwesolowski Borelli ptrobajo dpf rds lfriedl sen_cheng
  • High-throughput, quantitative analyses of genetic interactions in E. coli.
    Nature methods (1 August 2008)
    by Athanasios Typas, Robert J J Nichols, Deborah A A Siegele, Michael Shales, Sean R R Collins, Bentley Lim, Hannes Braberg, Natsuko Yamamoto, Rikiya Takeuchi, Barry L L Wanner, Hirotada Mori, Jonathan S S Weissman, Nevan J J Krogan, Carol A A Gross
    posted to systems-biology protein-protein-interactions by nedwards on 2008-10-02 16:30:45 as ** along with 3 people blwanner guhjy carlk
  • Modelling and analysis of gene regulatory networks
    Nat Rev Mol Cell Biol, Vol. 9, No. 10. (October 2008), pp. 770-780.
    by Guy Karlebach, Ron Shamir
    posted to systems-biology protein-protein-interactions by nedwards on 2008-09-30 16:03:05 as ** along with 9 people kaarsinogen thomaskelder fgibson druvus balicea brianb dakelley guhjy tmmurali
  • Assessing the limits of genomic data integration for predicting protein networks.
    Genome Res, Vol. 15, No. 7. (July 2005), pp. 945-953.
    by LJ Lu, Y Xia, A Paccanaro, H Yu, M Gerstein
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:39:56 as ** along with 13 people and 2 groups okarsligil lfriedl balajis maryee opheliav wnpx mbeautru eukfn grahamc brianb iris_2001 carlk phoenixzxl kdl Bioinformatics
  • Genome-Wide Prediction of C. elegans Genetic Interactions
    Science, Vol. 311, No. 5766. (10 March 2006), pp. 1481-1484.
    by Weiwei Zhong, Paul W Sternberg
    posted to systems-biology protein-protein-interactions by nedwards on 2008-10-02 16:29:14 as ** along with 10 people and 3 groups tharris lp2 lfriedl indigoviolet xwbcn nirfriedman patrycjam patrycja_missiuro mingzhi carlk C. elegans / WormBase kdl EisenLab
  • Functional genome annotation through phylogenomic mapping
    Nature Biotechnology, Vol. 23, No. 6. (06 June 2005), pp. 691-698.
    by Balaji S Srinivasan, Nora B Caberoy, Garret Suen, Rion G Taylor, Radhika Shah, Farah Tengra, Barry S Goldman, Anthony G Garza, Roy D Welch
    posted to protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:48:22 as ** along with 11 people and 1 group operon setar tmmurali pggm aprasad balajis nuke2005 lyongu shoshin blobbybirdman kroos Myxo group
  • Integrated Protein Interaction Networks for 11 Microbes
    : Research in Computational Molecular Biology (2006), pp. 1-14.
    by Balaji S Srinivasan, Antal F Novak, Jason A Flannick, Serafim Batzoglou, Harley H Mcadams
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:51:52 as ** along with 2 people balajis carlk
  • Current progress in network research: toward reference networks for key model organisms.
    Brief Bioinform (29 August 2007)
    by Balaji S S Srinivasan, Nigam H H Shah, Jason A A Flannick, Eduardo Abeliuk, Antal F F Novak, Serafim Batzoglou
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-10 17:46:46 as ** along with 6 people and 1 group pengchy guhjy grahamc roys daed marck Bioinformatics
  • A Bayesian networks approach for predicting protein-protein interactions from genomic data.
    Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453.
    by R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, M Snyder, JF Greenblatt, M Gerstein
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:54:41 as ** along with 19 people and 2 groups Robinder lfriedl balajis opheliav yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant karfunkel Evangelia shung phoenixzxl penpen926 carlk frohike kdl EBI-regulation
  • Protein-protein interaction networks and biology—what's the connection?
    Nature Biotechnology, Vol. 26, No. 1., pp. 69-72.
    by Luke Hakes, John W Pinney, David L Robertson, Simon C Lovell
    posted to protein-protein-interactions systems-biology by nedwards on 2008-04-16 14:50:00 as ** along with 15 people and 1 group Yanno guhjy tmmurali jfr balicea dullhunk neils mikaelhuss cjeans biehl shikin mclarenv Yumyai paolomarcatili zdai GeneGo
  • Predicting co-complexed protein pairs using genomic and proteomic data integration.
    BMC Bioinformatics, Vol. 5 (16 April 2004)
    by LV Zhang, SL Wong, OD King, FP Roth
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:41:55 as ** along with 3 people and 1 group lfriedl reidy carlk kdl
  • Protein networks in disease
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 644-652.
    by Trey Ideker, Roded Sharan
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 19:18:04 as ** along with 21 people kaarsinogen giovenko guhjy balicea tmmurali Borelli jwdietrich frohike bootsy roys mclarenv phoenixzxl brianb schuylrp jfr paolomarcatili gracio thomaskelder ptrobajo raiyar zwang
  • Extracting human protein interactions from MEDLINE using a full-sentence parser.
    Bioinformatics, Vol. 20, No. 5. (22 March 2004), pp. 604-611.
    by N Daraselia, A Yuryev, S Egorov, S Novichkova, A Nikitin, I Mazo
    posted to protein-protein-interactions by natsu on 2006-03-24 02:57:09 as ** along with 6 people and 1 group bqchinh irenas Enro miguel zlu satre dbk-lab
  • PRIME: automatically extracted PRotein Interactions and Molecular Information databasE.
    In Silico Biol, Vol. 5, No. 1. (2005), pp. 9-20.
    by A Koike, T Takagi
    posted to protein-protein-interactions by natsu on 2005-12-24 07:54:43 as *** along with 3 people and 1 group irenas miguel blackbart dbk-lab
  • Discovering patterns to extract protein-protein interactions from the literature: Part II.
    Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3294-3300.
    by Y Hao, X Zhu, M Huang, M Li
    posted to protein-protein-interactions by natsu on 2005-12-24 07:31:03 as *** along with 2 people davidandrzej satre
  • Insights into Protein-Protein Interfaces using a Bayesian Network Prediction Method
    Journal of Molecular Biology, Vol. In Press, Corrected Proof
    by James R Bradford, Chris J Needham, Andrew J Bulpitt, David R Westhead
    posted to protein-protein-interactions interfaces bayesian algorithm by massivemayhem on 2007-01-18 11:07:09 as ** along with 7 people and 2 groups barry conkymacro ameetsoni grahamc phoenixzxl marti paolomarcatili structural_bioinformatics Bioinformatics
  • Detecting conserved interaction patterns in biological networks.
    J Comput Biol, Vol. 13, No. 7. (September 2006), pp. 1299-1322.
    by M Koyutürk, Y Kim, S Subramaniam, W Szpankowski, A Grama
    posted to protein-protein-interactions networks algorithm by massivemayhem on 2007-01-18 11:07:58 as ** along with 3 people and 1 group cswinburne balajis mirzazadeh Bioinformatics
  • Structural systems biology: modelling protein interactions
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 3., pp. 188-197.
    by Patrick Aloy, Robert B Russell
    posted to systems-biology structural-studies reviews protein-protein-interactions by massivemayhem on 2007-01-18 11:04:38 as ** along with 19 people and 3 groups ana aalibes bicko xico dgront drastic choonpeng henschel ruvido cat_worth fishtank iris_2001 gvuister lpfernandes Evangelia andreas_foersch higueruelo chad_davis jteyra structural_bioinformatics Bioinformatics WetBiology
  • MINT: the Molecular INTeraction database.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by A Chatr-aryamontri, A Ceol, LM Palazzi, G Nardelli, MV Schneider, L Castagnoli, G Cesareni
    posted to protein-protein-interactions database by massivemayhem on 2007-01-18 11:34:06 as ** along with 3 people viktor21614 chad_davis bicko
  • iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions
    Bioinformatics, Vol. 21, No. 3. (01 February 2005), 410.
    by Robert D Finn, Mhairi Marshall, Alex Bateman
    posted to protein-protein-interactions database by massivemayhem on 2007-01-15 21:37:38 as ** along with 7 people and 2 groups kshameer mdimmic barry chad_davis choonpeng antonkratz kintoki structural_bioinformatics Bioinformatics
  • Odds ratio based multifactor-dimensionality reduction method for detecting gene-gene interactions
    Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 71-76.
    by Yujin Chung, Seung Y Lee, Robert C Elston, Taesung Park
    posted to protein-protein-interactions genetics algorithm by massivemayhem on 2007-01-16 18:16:01 as ** along with 4 people misonneh guhjy Ayest shigepong
  • Reactome: a knowledgebase of biological pathways.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by G Joshi-Tope, M Gillespie, I Vastrik, P D'Eustachio, E Schmidt, B de Bono, B Jassal, GR Gopinath, GR Wu, L Matthews, S Lewis, E Birney, L Stein
    posted to gene-function pathways protein-function protein-protein-interactions by massivemayhem on 2007-06-21 15:10:54 as ** along with 9 people and 1 group reyez aalibes kuhn yas dullhunk duartemolha cerami yggdrasil guhjy T_lab
  • IntAct--open source resource for molecular interaction data.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by S Kerrien, Y Alam-Faruque, B Aranda, I Bancarz, A Bridge, C Derow, E Dimmer, M Feuermann, A Friedrichsen, R Huntley, C Kohler, J Khadake, C Leroy, A Liban, C Lieftink, L Montecchi-Palazzi, S Orchard, J Risse, K Robbe, B Roechert, D Thorneycroft, Y Zhang, R Apweiler, H Hermjakob
    posted to protein-protein-interactions database by massivemayhem on 2007-01-16 08:54:15 as ** along with 1 person balajis
  • Revealing static and dynamic modular architecture of the eukaryotic protein interaction network
    Mol Syst Biol, Vol. 3 (24 April 2007)
    by Kakajan Komurov, Michael White
    posted to networks pathways protein-protein-interactions systems-biology by massivemayhem on 2007-04-26 14:20:06 as ** along with 8 people Borelli tomhebbron nicoleq zwang mingzhi phoenixzxl ellakat carlk
  • An automated method for finding molecular complexes in large protein interaction networks.
    BMC Bioinformatics, Vol. 4, No. 1. (13 January 2003)
    by GD Bader, CW Hogue
    posted to protein-protein-interactions networks complexes algorithm by massivemayhem on 2007-01-16 08:55:17 as ** along with 9 people and 2 groups dswan waqaralikeble cswinburne jiny dragonrez lfriedl nirfriedman carlk ethkim Bioinformatics kdl
  • In Search of the Biological Significance of Modular Structures in Protein Networks
    PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e107.
    by Zhi Wang, Jianzhi Zhang
    posted to networks protein-protein-interactions reviews systems-biology by massivemayhem on 2007-06-06 10:20:20 as ** along with 6 people and 2 groups jfr grahamc cjeans zwang cabbagezs pinney Bioinformatics ParkinsonLab_at_MaRS
  • STRING 7--recent developments in the integration and prediction of protein interactions.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by C von Mering, LJ Jensen, M Kuhn, S Chaffron, T Doerks, B Krüger, B Snel, P Bork
    posted to protein-protein-interactions database by massivemayhem on 2007-01-16 18:14:13 as ** along with 12 people wenhui chad_davis guhjy kuhn balajis fisherp raiyar larsjuhljensen higueruelo renatomilani carlk bicko
  • The value of high quality protein-protein interaction networks for systems biology.
    Curr Opin Chem Biol, Vol. 10, No. 6. (December 2006), pp. 551-558.
    by U Stelzl, EE Wanker
    posted to systems-biology protein-protein-interactions networks by massivemayhem on 2007-01-18 10:58:25 as **
  • Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by M Jayapandian, A Chapman, VG Tarcea, C Yu, A Elkiss, A Ianni, B Liu, A Nandi, C Santos, P Andrews, B Athey, D States, HV Jagadish
    posted to protein-protein-interactions database by massivemayhem on 2007-01-18 11:37:04 as ** along with 2 people guhjy cerami
  • Distinguishing structural and functional restraints in evolution in order to identify interaction sites.
    J Mol Biol, Vol. 342, No. 5. (1 October 2004), pp. 1487-1504.
    by V Chelliah, L Chen, TL Blundell, SC Lovell
    posted to protein-restraints protein-protein-interactions interaction-sites evolution by massivemayhem on 2007-01-18 11:09:34 as ** along with 8 people and 1 group chrn bicko rabio cat_worth MaggieYe medic0747 cjeans zwang structural_bioinformatics
  • UniHI: an entry gate to the human protein interactome.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by G Chaurasia, Y Iqbal, C Hänig, H Herzel, EE Wanker, ME Futschik
    posted to protein-protein-interactions interactome database by massivemayhem on 2007-01-15 21:34:31 as ** along with 3 people guhjy jfr grahamc
  • Discovering disease genes by topological features in human protein-protein interaction network.
    Bioinformatics (5 September 2006)
    by Jianzhen Xu, Yongjin Li
    posted to protein-protein-interactions networks disease algorithm by massivemayhem on 2007-01-16 18:11:04 as ** along with 3 people guhjy gespim iris_2001
  • Circuit diagrams for biological networks
    Mol Syst Biol, Vol. 2 (17 January 2006)
    by Kurt W Kohn, Mirit Aladjem
    posted to protein-protein-interactions networks algorithm by massivemayhem on 2007-01-18 10:49:35 as **
  • Protein-protein interaction site prediction based on conditional random fields.
    Bioinformatics (18 January 2007)
    by Ming-Hui H Li, Xiao-Long L Wang, Lei Lin, Tao Liu
    posted to protein-protein-interactions algorithm by massivemayhem on 2007-01-22 11:45:34 as **
  • Analysis of protein sequence and interaction data for candidate disease gene prediction.
    Nucleic Acids Res, Vol. 34, No. 19. (2006)
    by RA George, JY Liu, LL Feng, RJ Bryson-Richardson, D Fatkin, MA Wouters
    posted to protein-protein-interactions disease candidate-genes by massivemayhem on 2007-01-18 11:05:22 as ** along with 1 person and 1 group cat_worth structural_bioinformatics
  • Using process diagrams for the graphical representation of biological networks
    Nature Biotechnology, Vol. 23, No. 8. (04 August 2005), pp. 961-966.
    by Hiroaki Kitano, Akira Funahashi, Yukiko Matsuoka, Kanae Oda
    posted to protein-protein-interactions networks algorithm by massivemayhem on 2007-01-18 10:47:18 as ** along with 7 people lflorez dullhunk maralena pmendes srp33 csanford lenov
  • Modular organization of protein interaction networks.
    Bioinformatics (8 November 2006)
    by Feng Luo, Yunfeng Yang, Chin-Fu F Chen, Roger Chang, Jizhong Zhou, Richard H H Scheuermann
    posted to protein-protein-interactions networks algorithm by massivemayhem on 2007-01-16 18:13:21 as ** along with 3 people and 1 group jfr grahamc maralena ParkinsonLab_at_MaRS
  • Targeting Protein-Protein Interactions with Small Molecules: Challenges and Perspectives for omputational Binding Epitope Detection and Ligand Finding
    Current Medicinal Chemistry, Vol. 13, No. 22. (September 2006), pp. 2607-2625.
    by Gonzalez-Ruiz, Domingo, Gohlke, Holger
    posted to protein-protein-interactions by dgruiz on 2006-09-01 07:18:21 as **** along with 2 people aqeel higueruelo
  • Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome.
    Genome Biol, Vol. 6, No. 5. (2005)
    by AK Ramani, RC Bunescu, RJ Mooney, EM Marcotte
    posted to protein-protein-interactions by davidandrzej on 2006-03-22 18:26:05 as read along with 18 people and 4 groups ggallone yaredo setar tmmurali dragonrez okarsligil lfriedl ccots balajis maryee brant opheliav wnpx rlhsiao bundschu mikaelhuss raiyar grahamc Jarman Lab kdl Bioinformatics generif_paper
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