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Tag protein-protein [352 articles]

Recent papers classified by the tag protein-protein.
  • A Bayesian networks approach for predicting protein-protein interactions from genomic data.
    Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453.
    by R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, M Snyder, JF Greenblatt, M Gerstein
    posted to interactions of prediction protein-protein by yuval on 2005-12-06 20:41:07 as ** along with 19 people and 2 groups Robinder lfriedl balajis opheliav wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant nedwards karfunkel Evangelia shung phoenixzxl penpen926 carlk frohike kdl EBI-regulation
  • Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome.
    Genome Biol, Vol. 6, No. 5. (2005)
    by AK Ramani, RC Bunescu, RJ Mooney, EM Marcotte
    posted to protein-protein interaction by yaredo on 2008-10-12 16:41:26 as ** along with 18 people and 4 groups ggallone setar tmmurali dragonrez okarsligil lfriedl ccots balajis maryee brant opheliav davidandrzej wnpx rlhsiao bundschu mikaelhuss raiyar grahamc Jarman Lab kdl Bioinformatics generif_paper
  • HADDOCK: a protein-protein docking approach based on biochemical or biophysical information.
    J Am Chem Soc, Vol. 125, No. 7. (19 February 2003), pp. 1731-1737.
    by C Dominguez, R Boelens, AM Bonvin
    posted to docking haddock protein-protein by yalexeev on 2008-02-01 11:09:14 as ** along with 8 people laurabailey A_Coletta_Thesis betainverse dgruiz bicko bluvsh1 gloria ruvido
  • ZDOCK predictions for the CAPRI challenge.
    Proteins, Vol. 52, No. 1. (1 July 2003), pp. 68-73.
    by R Chen, W Tong, J Mintseris, L Li, Z Weng
    posted to docking protein-protein zdock by yalexeev on 2008-02-01 11:01:52 as ** along with 1 person ffranca
  • Docking and scoring protein complexes: CAPRI 3rd Edition
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Marc F Lensink, Raúl Méndez, Shoshana J Wodak
    posted to docking protein-protein by yalexeev on 2008-02-01 11:06:58 as ** along with 7 people and 1 group csrocha bicko ruvido cjeans carlescorbi middledomain timg structural_bioinformatics
  • A protein interaction map of Drosophila melanogaster.
    Science, Vol. 302, No. 5651. (5 December 2003), pp. 1727-1736.
    by L Giot, JS Bader, C Brouwer, A Chaudhuri, B Kuang, Y Li, YL Hao, CE Ooi, B Godwin, E Vitols, G Vijayadamodar, P Pochart, H Machineni, M Welsh, Y Kong, B Zerhusen, R Malcolm, Z Varrone, A Collis, M Minto, S Burgess, L McDaniel, E Stimpson, F Spriggs, J Williams, K Neurath, N Ioime, M Agee, E Voss, K Furtak, R Renzulli, N Aanensen, S Carrolla, E Bickelhaupt, Y Lazovatsky, A DaSilva, J Zhong, CA Stanyon, RL Finley, KP White, M Braverman, T Jarvie, S Gold, M Leach, J Knight, RA Shimkets, MP McKenna, J Chant, JM Rothberg
    posted to drosophila fly high-throughput interaction map protein-protein by xico on 2006-11-01 23:37:21 as *** along with 14 people and 2 groups diamantis dragonrez shivaram lfriedl nuke2005 lyongu sesejun maryee memming eukfn csanford antonkratz carlk cerca kdl WetBiology
  • Strategies to search and design stabilizers of protein-protein interactions: A feasibility study.
    Proteins (28 March 2007)
    by Peter Block, Nils Weskamp, Alexander Wolf, Gerhard Klebe
    posted to protein-protein stabilisation by willpitt on 2008-02-28 10:14:37 as **** along with 3 people bicko higueruelo allmensch
  • Choosing negative examples for the prediction of protein-protein interactions
    BMC Bioinformatics, Vol. 7, No. Suppl 1. (2006)
    by Asa B Hur, William Noble
    posted to protein-protein by wilbur on 2007-12-22 17:02:54 as ** along with 3 people and 1 group lfriedl balajis IbnBio kdl
  • Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?
    Protein Science: a Publication Of The Protein Society, Vol. 13, No. 1. (January 2004), pp. 190-202.
    by Daniel R Caffrey, Shyamal Somaroo, Jason D Hughes, Julian Mintseris, Enoch S Huang
    posted to protein-protein by wilbur on 2008-03-01 00:51:51 as ** along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
  • Evidence of probabilistic behaviour in protein interaction networks.
    BMC Syst Biol, Vol. 2, No. 1. (31 January 2008)
    by Joseph Ivanic, Anders Wallqvist, Jaques Reifman
    posted to protein-protein by wilbur on 2008-02-22 11:18:27 as ** along with 1 person kluck
  • Chemical control over protein-protein interactions: beyond inhibitors.
    Comb Chem High Throughput Screen, Vol. 10, No. 8. (September 2007), pp. 667-675.
    by JE Gestwicki, PS Marinec
    posted to interaction protein-protein by wilbur on 2008-01-03 18:30:53 as ** along with 1 person higueruelo
  • Soft protein-protein docking in internal coordinates.
    Protein Sci, Vol. 11, No. 2. (February 2002), pp. 280-291.
    by J Fernández-Recio, M Totrov, R Abagyan
    posted to protein-protein by wilbur on 2007-12-15 18:06:09 as ** along with 5 people and 2 groups barry bicko bluvsh1 cjeans selrac structural_bioinformatics Bioinformatics
  • Comparative analysis of five protein-protein interaction corpora
    BMC Bioinformatics, Vol. 9, No. Suppl 3. (2008)
    by Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari Bjorne, Filip Ginter, Tapio Salakoski
    posted to bionlp interaction protein-protein by vlachmore on 2008-05-09 15:34:29 as ** along with 7 people and 2 groups farzanehs guhjy laughcry kluck aprildh31 anthropomorphism gilesc BioInfPDL Proteasome
  • The interface of protein-protein complexes: Analysis of contacts and prediction of interactions.
    Cell Mol Life Sci (15 December 2007)
    by R P Bahadur, M Zacharias
    posted to protein-protein interface interaction complexes by viktor21614 on 2008-10-14 21:22:05 as ** along with 4 people guhjy bicko higueruelo marti
  • Similar chemistry, but different bond preferences in inter versus intra-protein interactions.
    Proteins (7 February 2008)
    by Mati Cohen, Dana Reichmann, Hani Neuvirth, Gideon Schreiber
    posted to protein-protein interaction by viktor21614 on 2008-10-17 15:01:18 as ** along with 4 people bicko higueruelo Lombardo_7 kgutwin
  • Protein-protein interactions: a review of protein dimer structures.
    Prog Biophys Mol Biol, Vol. 63, No. 1. (1995), pp. 31-65.
    by S Jones, JM Thornton
    posted to protein-protein interaction dimer by viktor21614 on 2008-10-14 21:16:49 as ** along with 4 people and 5 groups bicko barry chad_davis joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
  • Recognition-induced Conformational Changes in Protein-Protein Docking
    Current Pharmaceutical Biotechnology, Vol. 9, No. 2. (April 2008), pp. 77-86.
    by Lensink, , Mendez,
    posted to protein-protein docking conformation by viktor21614 on 2008-10-14 21:15:18 as ** along with 1 person aqeel
  • Rational drug design via intrinsically disordered protein.
    Trends Biotechnol, Vol. 24, No. 10. (October 2006), pp. 435-442.
    by Y Cheng, T LeGall, CJ Oldfield, JP Mueller, YY Van, P Romero, MS Cortese, VN Uversky, AK Dunker
    posted to discovery disordered drug interactions protein-protein proteins by taianah on 2008-06-25 14:41:38 as ***** along with 2 people carlosjavierna higueruelo
  • Protein function prediction using the Protein Link EXplorer (PLEX).
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2558-2559.
    by SV Date, EM Marcotte
    posted to bioinformatics interactome networks protein-protein by svdate on 2007-12-04 15:41:25 as ***** along with 1 person tmmurali
  • Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages.
    Nat Biotechnol, Vol. 21, No. 9. (September 2003), pp. 1055-1062.
    by SV Date, EM Marcotte
    posted to bioinformatics biology computational interactions interactome networks protein-protein systems by svdate on 2007-12-04 15:46:17 as ***** along with 2 people tmmurali balajis
  • Computational modeling of the Plasmodium falciparum interactome reveals protein function on a genome-wide scale
    Genome Res., Vol. 16, No. 4. (1 April 2006), pp. 542-549.
    by Shailesh V Date, Christian J Stoeckert
    posted to bioinformatics biology computational interactions interactome malaria networks plasmodium protein-protein by svdate on 2007-12-04 15:39:39 as ***** along with 2 people Sharpshoot becarmson
  • Predicting disease genes using protein-protein interactions.
    J Med Genet, Vol. 43, No. 8. (August 2006), pp. 691-698.
    by M Oti, B Snel, MA Huynen, HG Brunner
    posted to disease interactions protein-protein by svdate on 2007-12-04 15:55:28 as *** along with 6 people diamantis winterschlaefer bicko jiny xingxu balicea
  • LGL: creating a map of protein function with an algorithm for visualizing very large biological networks.
    J Mol Biol, Vol. 340, No. 1. (25 June 2004), pp. 179-190.
    by AT Adai, SV Date, S Wieland, EM Marcotte
    posted to bioinformatics biology computational interactions interactome protein-protein software visualization by svdate on 2007-12-04 15:45:39 as ***** along with 3 people opheliav mmartin ganden
  • Evolution of Proteins and Gene Expression Levels are Coupled in Drosophila and are Independently Associated with mRNA Abundance, Protein Length, and Number of Protein-Protein Interactions
    Molecular Biology and Evolution, Vol. 22, No. 5. (15 May 2005), pp. 1345-1354.
    by Bernardo Lemos, Brian R Bettencourt, Colin D Meiklejohn, Daniel L Hartl
    posted to abundance drosophila evolution expression gene interaction length molevoltestis mrna protein protein-protein by skumagai on 2008-06-06 14:28:12 as read along with 2 people and 1 group penka Garamonfok Nie
  • An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins.
    Protein Sci, Vol. 4, No. 3. (March 1995), pp. 506-520.
    by R Sowdhamini, TL Blundell
    posted to bioinformatics domain prediction protein-protein by skhadar on 2007-08-23 09:12:14 as ** along with 2 people dimka medic0747
  • Discovering disease-genes by topological features in human protein-protein interaction network
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2800-2805.
    by J Xu, Y Li
    posted to analysis genome interaction protein-protein by skhadar on 2007-07-25 07:17:43 as ***** along with 3 people and 2 groups diamantis marcius ealloza BioinfoCIPF SGU-CIPF
  • Assessment of blind predictions of protein-protein interactions: current status of docking methods.
    Proteins, Vol. 52, No. 1. (1 July 2003), pp. 51-67.
    by R Mendez, R Leplae, L De Maria, SJ Wodak
    posted to interactions protein-protein by sangeetha on 2007-07-11 10:32:11 as *** along with 3 people and 2 groups bicko ima cjeans Bioinformatics insilicodrug
  • Correlated sequence-signatures as markers of protein-protein interaction.
    J Mol Biol, Vol. 311, No. 4. (24 August 2001), pp. 681-692.
    by E Sprinzak, H Margalit
    posted to protein-protein by Rhys on 2007-11-16 07:54:29 as *** along with 10 people behindtherabbit bicko chad_davis maryee dyermd grahamc cjeans lilith wilbur phoenixzxl
  • T-Epitope Designer: A HLA-peptide binding prediction server.
    Bioinformation, Vol. 1, No. 1. (2005), pp. 21-24.
    by P Kangueane, MK Sakharkar
    posted to drug_design protein-protein by ramensky on 2007-07-13 10:50:36 as **
  • Emerging classes of protein-protein interaction inhibitors and new tools for their development.
    Curr Opin Chem Biol, Vol. 8, No. 4. (August 2004), pp. 442-449.
    by L Pagliaro, J Felding, K Audouze, SJ Nielsen, RB Terry, C Krog-Jensen, S Butcher
    posted to drug_design protein-protein by ramensky on 2008-02-16 01:22:27 as ** along with 1 person higueruelo
  • Structural and functional definition of the specificity of a novel caspase-3 inhibitor, Ac-DNLD-CHO
    BMC Pharmacology, Vol. 7 (27 June 2007), 8.
    by Atsushi Yoshimori, Junichi Sakai, Satoshi Sunaga, Takanobu Kobayashi, Satoshi Takahashi, Naoyuki Okita, Ryoko Takasawa, Sei-Ichi Tanuma
    posted to drug_design protein-protein by ramensky on 2007-10-09 20:44:18 as **
  • A systematic method for identifying small-molecule modulators of protein-protein interactions
    Proceedings of the National Academy of Sciences, Vol. 101, No. 44. (2 November 2004), pp. 15591-15596.
    by Alexander R Horswill, Sergey N Savinov, Stephen J Benkovic
    posted to drug_design protein-protein by ramensky on 2008-03-18 12:09:42 as ** along with 1 person higueruelo
  • Using protein complexes to predict phenotypic effects of gene mutation
    Genome Biology, Vol. 8 (27 November 2007), R252.
    by Hunter B Fraser, Joshua B Plotkin
    posted to nssnps protein-protein by ramensky on 2007-12-03 17:48:30 as ** along with 5 people diamantis winterschlaefer grahamc jiny bpcusack
  • Small-molecule inhibitors of protein-protein interactions: progressing towards the dream.
    Nat Rev Drug Discov, Vol. 3, No. 4. (April 2004), pp. 301-317.
    by MR Arkin, JA Wells
    posted to drug_design protein-protein by ramensky on 2008-02-16 01:24:10 as ** along with 6 people mdimmic dgruiz lna bicko dailybiomed Dualsystems
  • Structure-function relationships of the variable domains of monoclonal antibodies approved for cancer treatment.
    Crit Rev Oncol Hematol (10 July 2007)
    by Charlotte Magdelaine-Beuzelin, Quentin Kaas, Vanessa Wehbi, Marc Ohresser, Roy Jefferis, Marie-Paule P Lefranc, Hervé Watier
    posted to drug_design protein-protein by ramensky on 2007-09-17 15:30:22 as **
  • Relating three-dimensional structures to protein networks provides evolutionary insights.
    Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941.
    by PM Kim, LJ Lu, Y Xia, MB Gerstein
    posted to protein-protein by ramensky on 2007-03-27 23:44:02 as *** along with 18 people and 2 groups cerca bicko lfriedl chad_davis Einat tny choonpeng timflutre grahamc massivemayhem efge lpfernandes cdeane Pao-Yang phoenixzxl carlk paolomarcatili saket structural_bioinformatics kdl
  • A novel MHCp binding prediction model
    Human Immunology, Vol. 64, No. 12. (December 2003), pp. 1123-1143.
    by Bing Zhao, Venkatarajan S Mathura, Ganapathy Rajaseger, Shabbir Moochhala, Meena K Sakharkar, Pandjassarame Kangueane
    posted to drug_design protein-protein by ramensky on 2007-07-13 10:58:51 as **
  • Inhibiting protein-protein interactions using designed molecules.
    Curr Opin Struct Biol, Vol. 15, No. 1. (February 2005), pp. 31-34.
    by L Zhao, J Chmielewski
    posted to drug_design protein-protein by ramensky on 2008-02-16 01:20:36 as ** along with 2 people bicko higueruelo
  • Structural characterisation and functional significance of transient protein-protein interactions.
    J Mol Biol, Vol. 325, No. 5. (31 January 2003), pp. 991-1018.
    by IM Nooren, JM Thornton
    posted to protein-protein by ramensky on 2007-03-27 23:37:06 as *** along with 4 people chad_davis drastic higueruelo marti
  • No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions.
    BMC Bioinformatics, Vol. 5 (19 April 2004)
    by MN Offman, RN Nurtdinov, MS Gelfand, D Frishman
    posted to protein-protein by ramensky on 2007-03-27 23:35:54 as ** along with 1 person antonkratz
  • Reaching for high-hanging fruit in drug discovery at protein–protein interfaces
    Nature, Vol. 450, No. 7172. (12 December 2007), pp. 1001-1009.
    by James A Wells, Christopher L Mcclendon
    posted to protein-protein drug_design by ramensky on 2008-11-15 20:59:44 as ** along with 6 people cjeans chgjb phoenixzxl higueruelo bicko guhjy
  • Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.
    Nature genetics (15 June 2008)
    by Jun Zhu, Bin Zhang, Erin N N Smith, Becky Drees, Rachel B B Brem, Leonid Kruglyak, Roger E E Bumgarner, Eric E E Schadt
    posted to expression heterogeneous integration network protein-protein snp yeast by ptrobajo on 2008-06-18 14:02:08 as ** along with 12 people suteedee burak realzhang kengg maralena tmmurali guhjy roys marck caseybrown djkt srp33
  • A map of human protein interactions derived from co-expression of human mRNAs and their orthologs
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Arun K Ramani, Zhihua Li, Traver G Hart, Mark W Carlson, Daniel R Boutz, Edward M Marcotte
    posted to protein-protein ortholog microarray interaction human cross-species compendium by ptrobajo on 2008-06-18 11:04:47 as ** along with 11 people and 1 group kgutwin windman83 druvus jeremymiller tmmurali biomcgary phoenixzxl zwang giovanni grahamc ardalby OPIG
  • High-Quality Binary Protein Interaction Map of the Yeast Interactome Network
    Science (21 August 2008), 1158684.
    by Haiyuan Yu, Pascal Braun, Muhammed A Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amelie Dricot, Alexei Vazquez, Ryan R Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E Hudson, Juyong Park, Xiaofeng Xin, Michael E Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P Roth, Albert-Laszlo Barabasi, Jan Tavernier, David E Hill, Marc Vidal
    posted to yeast protein-protein interaction by ptrobajo on 2008-10-26 20:26:36 as ** along with 15 people and 1 group jfr ocs cerca carlk zwang gracio reyez mdperry dullhunk Petersarkies grahamc yeastyboy guhjy maralena neils BenosLab
  • Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
    Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11.
    by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Gary C Hon, Chad L Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga G Troyanskya, Trey Ideker, Kara Dolinski, Nizar N Batada, Mike Tyers
    posted to database protein-protein yeast by pmendes on 2008-03-07 16:24:47 as ** along with 17 people and 3 groups snuppepuppan tmmurali lfriedl balajis wnpx nickluscombe egralla citecat noano koller grahamc iris_2001 sgoetz shikin s041629 mtruksa chasmand kdl EBI-regulation GeneGo
  • Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets
    Nature Genetics, Vol. 38, No. 3. (24 February 2006), pp. 285-293.
    by TKB Gandhi, Jun Zhong, Suresh Mathivanan, L Karthick, KN Chandrika, Sujatha S Mohan, Salil Sharma, Stefan Pinkert, Shilpa Nagaraju, Balamurugan Periaswamy, Goparani Mishra, Kannabiran Nandakumar, Beiyi Shen, Nandan Deshpande, Rashmi Nayak, Malabika Sarker, Jef D Boeke, Giovanni Parmigiani, Jörg Schultz, Joel S Bader, Akhilesh Pandey
    posted to protein-protein by pmendes on 2008-03-07 17:25:18 as ** along with 13 people and 2 groups yyby aprildh31 balajis indigoviolet tny spavey TheresaNiederberger cjeans alwinpremanand dejori Pao-Yang carlk cerca EisenLab FAB-lab
  • Analysis of protein complexes using mass spectrometry
    Nature Reviews Molecular Cell Biology, Vol. 8, No. 8., pp. 645-654.
    by Anne-Claude Gingras, Matthias Gstaiger, Brian Raught, Ruedi Aebersold
    posted to protein-protein by Petersarkies on 2008-11-19 09:24:17 as ** along with 2 people guhjy zwang
  • Sequential Peptide Affinity (SPA) System for the Identification of Mammalian and Bacterial Protein Complexes
    J. Proteome Res., Vol. 3, No. 3. (14 June 2004), pp. 463-468.
    by M Zeghouf, J Li, G Butland, A Borkowska, V Canadien, D Richards, B Beattie, A Emili, JF Greenblatt
    posted to protein-protein by perrywoo on 2006-04-17 18:36:38 as **
  • Characterizing protein-protein complexes and oligomers by nuclear magnetic resonance spectroscopy.
    Methods Enzymol, Vol. 339 (2001), pp. 238-258.
    by KJ Walters, AE Ferentz, BJ Hare, P Hidalgo, A Jasanoff, H Matsuo, G Wagner
    posted to nmr protein-protein by perrywoo on 2006-03-01 21:45:24 as **
  • NMR studies of protein interactions.
    Curr Opin Struct Biol, Vol. 16, No. 1. (February 2006), pp. 109-117.
    by K Takeuchi, G Wagner
    posted to nmr protein-protein by perrywoo on 2006-03-01 21:45:43 as **
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