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Tag protein-nucleic_acid_interactions [12 articles]

Recent papers classified by the tag protein-nucleic_acid_interactions.
  • RNA recognition motifs: boring? Not quite
    Current Opinion in Structural Biology, Vol. 18, No. 3. (June 2008), pp. 290-298.
    by Antoine Cléry, Markus Blatter, Frédéric H Allain
    posted to protein-nucleic_acid_interactions by sobolevnrm on 2008-06-17 12:11:28 as read along with 1 group baker-group
  • Water molecules in DNA recognition II: a molecular dynamics view of the structure and hydration of the trp operator
    Journal of Molecular Biology, Vol. 282, No. 4. (2 October 1998), pp. 859-873.
    by Alexandre M Bonvin, Maria Sunnerhagen, Gottfried Otting, Wilfred F van Gunsteren
    posted to electrostatics nucleic_acids protein-nucleic_acid_interactions solvation by sobolevnrm on 2008-04-25 15:52:31 as read along with 1 group baker-group
  • Salt-Mediated Electrostatics in the Association of TATA Binding Proteins to DNA: A Combined Molecular Mechanics/Poisson-Boltzmann Study
    Biophys. J., Vol. 94, No. 12. (15 June 2008), pp. 4634-4645.
    by Johan H Bredenberg, Cristina Russo, Marcia O Fenley
    posted to electrostatics protein-nucleic_acid_interactions solvation by sobolevnrm on 2008-07-25 11:56:27 as read along with 1 person and 3 groups barry baker-group McCammon structural_bioinformatics
  • Hydration and DNA Recognition by Homeodomains
    Cell, Vol. 85, No. 7. (28 June 1996), pp. 1057-1065.
    by Martin Billeter, Peter Güntert, Peter Luginbühl, Kurt Wüthrich
    posted to electrostatics protein-nucleic_acid_interactions solvation by sobolevnrm on 2008-04-25 15:57:42 as read along with 1 group baker-group
  • Molecular dynamics simulations of nucleic acid-protein complexes
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Mackerell, Lennart Nilsson
    posted to molecular_dynamics molecular_simulation protein-nucleic_acid_interactions by sobolevnrm on 2008-03-14 11:15:30 as read along with 3 people and 1 group ruvido zwang phoenixzxl baker-group
  • Dynamics of Recognition between tRNA and Elongation Factor Tu
    Journal of Molecular Biology, Vol. 377, No. 5. (11 April 2008), pp. 1382-1405.
    by John Eargle, Alexis A Black, Anurag Sethi, Leonardo G Trabuco, Zaida Luthey-Schulten
    posted to allostery electrostatics nucleic_acids protein-nucleic_acid_interactions by sobolevnrm on 2008-03-25 11:14:57 as read along with 1 group baker-group
  • Predicting RNA-binding sites from the protein structure based on electrostatics, evolution and geometry
    Nucl. Acids Res. (14 February 2008), gkn008.
    by Yao C Chen, Carmay Lim
    posted to bioinformatics electrostatics nucleic_acids protein-nucleic_acid_interactions structure by sobolevnrm on 2008-04-29 11:22:50 as read along with 3 people and 1 group kaarsinogen sunhwan marck baker-group
  • Prediction of Salt and Mutational Effects on the Association Rate of U1A Protein and U1 Small Nuclear RNA Stem/Loop II
    J. Phys. Chem. B (22 December 2007)
    by S Qin, HX Zhou
    posted to diffusion kinetics protein-nucleic_acid_interactions by sobolevnrm on 2008-01-30 12:33:48 as read along with 1 group baker-group
  • DNA Binding and Bending by HMG Boxes: Energetic Determinants of Specificity
    Journal of Molecular Biology, Vol. 343, No. 2. (15 October 2004), pp. 371-393.
    by Anatoly I Dragan, Christopher M Read, Elena N Makeyeva, Ekaterina I Milgotina, Mair E Churchill, Colyn Crane-Robinson, Peter L Privalov
    posted to electrostatics protein-nucleic_acid_interactions solvation by sobolevnrm on 2008-06-30 15:33:24 as read along with 1 group baker-group
  • Structural basis for gate-DNA recognition and bending by type IIA topoisomerases
    Nature, Vol. 450, No. 7173., pp. 1201-1205.
    by Ken C Dong, James M Berger
    posted to apbs protein-nucleic_acid_interactions structure by sobolevnrm on 2008-04-18 14:02:37 as read along with 1 person and 1 group cactus baker-group
  • Formation of a Wrapped DNA-Protein Interface: Experimental Characterization and Analysis of the Large Contributions of Ions and Water to the Thermodynamics of Binding IHF to H' DNA
    Journal of Molecular Biology, Vol. 377, No. 1. (14 March 2008), pp. 9-27.
    by Vander, Ruth M Saecker, Record
    posted to electrostatics protein-nucleic_acid_interactions solvation by sobolevnrm on 2008-03-03 12:04:18 as read along with 1 group baker-group
  • Do water molecules mediate protein-DNA recognition?
    J Mol Biol, Vol. 314, No. 3. (30 November 2001), pp. 619-632.
    by CK Reddy, A Das, B Jayaram
    posted to electrostatics protein-nucleic_acid_interactions solvation by sobolevnrm on 2008-04-25 16:07:15 as read along with 2 people and 1 group yoonk medic0747 baker-group
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