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Tag protein-interaction-networks [29 articles]

Recent papers classified by the tag protein-interaction-networks.
  • Evaluation of clustering algorithms for protein-protein interaction networks
    BMC Bioinformatics, Vol. 7 (06 November 2006), 488.
    by Sylvain Brohee, Jacques van Helden
    posted to clustering protein-interaction-networks by pdelosri on 2006-11-30 13:08:00 as ** along with 16 people and 1 group kaarsinogen jfr chad_davis balajis nirfriedman dquest grahamc cjeans hpaces Pao-Yang oktie carlk Borelli AbnerCYH cerca ethkim EPFL_SB_ITP_LBS
  • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    Nature, Vol. 430, No. 6995. (01 July 2004), pp. 88-93.
    by Jing-Dong J Han, Nicolas Bertin, Tong Hao, Debra S Goldberg, Gabriel F Berriz, Lan V Zhang, Denis Dupuy, Albertha JM Walhout, Michael E Cusick, Frederick P Roth, Marc Vidal
    posted to protein-interaction-networks by lawraga on 2008-11-04 14:10:16 as read along with 27 people and 2 groups saket diamantis davidecellai dragonrez lfriedl balajis yoh j3xucite kintoki koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer Evangelia cdeane shung phoenixzxl stefanoallesina ellakat frohike shikin ksiek carlk kdl GeneGo
  • Protein Interaction Networks by Proteome Peptide Scanning
    PLoS Biology, Vol. 2, No. 1. (1 January 2004), e14.
    by Christiane Landgraf, Simona Panni, Luisa Montecchi-Palazzi, Luisa Castagnoli, Jens Schneider-Mergener, Rudolf Volkmer-Engert, Gianni Cesareni
    posted to networks protein-interaction-networks use peptides by Evangelia on 2008-03-18 14:40:49 as ** along with 3 people eukfn biehl hplatero
  • Osprey: a network visualization system.
    Genome Biol, Vol. 4, No. 3. (2003)
    by BJ Breitkreutz, C Stark, M Tyers
    posted to interaction networks protein-interaction-networks protein-protein use by Evangelia on 2008-03-18 12:25:41 as *** along with 7 people and 1 group tdent ianturton ganden maralena djsaab renatomilani hryk CHISEL
  • Modular organization of cellular networks
    Proceedings of the National Academy of Sciences, Vol. 100, No. 3. (4 February 2003), pp. 1128-1133.
    by Alexander W Rives, Timothy Galitski
    posted to networks protein protein-interaction-networks use by Evangelia on 2008-03-18 12:49:46 as *** along with 7 people diamantis jiny karfunkel stefanoallesina ellakat carlk roys
  • Protein interaction: same network, different hubs
    Trends in Genetics, Vol. 19, No. 12. (December 2003), pp. 681-683.
    by Robert Hoffmann, Alfonso Valencia
    posted to networks protein-interaction-networks use by Evangelia on 2008-03-18 14:45:32 as ***
  • Getting connected: analysis and principles of biological networks.
    Genes Dev, Vol. 21, No. 9. (1 May 2007), pp. 1010-1024.
    by X Zhu, M Gerstein, M Snyder
    posted to interaction ppi protein-interaction-networks protein-protein review use by Evangelia on 2008-03-09 15:25:38 as read along with 11 people davidecellai pengchy jfr balajis grahamc fishtank nedwards naegele kristen carlk renatomilani
  • GENOME-SCALE MODELS OF MICROBIAL CELLS: EVALUATING THE CONSEQUENCES OF CONSTRAINTS
    Nat Rev Micro, Vol. 2, No. 11. (November 2004), pp. 886-897.
    by Nathan D Price, Jennifer L Reed, Bernhard O Palsson
    posted to model networks protein-interaction-networks review use by Evangelia on 2008-03-18 12:44:29 as *** along with 2 people and 1 group tny JeremyZucker MetabolicModeling
  • Systematic discovery of in vivo phosphorylation networks.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1415-1426.
    by R Linding, LJ Jensen, GJ Ostheimer, MA van Vugt, C Jørgensen, IM Miron, F Diella, K Colwill, L Taylor, K Elder, P Metalnikov, V Nguyen, A Pasculescu, J Jin, JG Park, LD Samson, JR Woodgett, RB Russell, P Bork, MB Yaffe, T Pawson
    posted to networks peptides phospho_peptides protein-interaction-networks rev_ref by Evangelia on 2008-05-11 14:44:13 as read along with 16 people and 2 groups ptrobajo guhjy skhadar julius zwang cdppublications lp2 psique robrussell snowcrash larsjuhljensen renatomilani carlk daed chad_davis bouncingbudha SysbioMPI-TCells Durbin group
  • Protein interaction networks from yeast to human.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 292-299.
    by P Bork, LJ Jensen, C von Mering, AK Ramani, I Lee, EM Marcotte
    posted to networks protein-interaction-networks review use by Evangelia on 2008-03-18 14:39:44 as *** along with 10 people aelef jiny gowtham kuhn koller grahamc cjeans lpfernandes selrac larsjuhljensen
  • Comparative assessment of large-scale data sets of protein-protein interactions.
    Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403.
    by C von Mering, R Krause, B Snel, M Cornell, SG Oliver, S Fields, P Bork
    posted to interaction networks protein-interaction-networks use by Evangelia on 2008-03-18 14:43:46 as *** along with 21 people and 6 groups camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy ruvido raiyar grahamc iris_2001 cmor shu shikin Pao-Yang carlk cerca ethkim dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper GeneGo
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to networks protein-interaction-networks structure use by Evangelia on 2008-03-19 08:28:27 as *** along with 8 people and 1 group chad_davis Borelli bicko neils grahamc paolomarcatili phoenixzxl zwang structural_bioinformatics
  • A correlated motif approach for finding short linear motifs from protein interaction networks
    BMC Bioinformatics, Vol. 7 (16 November 2006), 502.
    by Soon-Heng Tan, Willy Hugo, Wing-Kin Sung, See-Kiong Ng
    posted to motifs networks peptides protein-interaction-networks rev_ref by Evangelia on 2008-05-11 15:04:56 as ***
  • The large-scale organization of metabolic networks.
    Nature, Vol. 407, No. 6804. (5 October 2000), pp. 651-654.
    by H Jeong, B Tombor, R Albert, ZN Oltvai, AL Barabási
    posted to interaction networks protein-interaction-networks protein-protein use by Evangelia on 2008-03-18 12:39:27 as *** along with 22 people and 2 groups camster snuppepuppan jpmague mague alexisgallagher bjorns Borelli shivaram lfriedl cmmorel alexg Shirakawa ddahlem gcalda grahamc jrbanga karfunkel shung pmendes stefanoallesina shikin dylanwalker dbk-lab kdl
  • Cytoscape: a software environment for integrated models of biomolecular interaction networks.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2498-2504.
    by P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, B Schwikowski, T Ideker
    posted to interaction networks protein-interaction-networks protein-protein use by Evangelia on 2008-03-18 12:53:56 as *** along with 18 people and 3 groups daforerog cswinburne thomaskelder nolodie giovenko Stew dragonrez balajis tvdbulck frohike carmaus dagmar natstreet jlh64 pmendes yggdrasil carlk Borelli dIEMoSIRIS MoSi-Rostock compneur
  • Classification of scale-free networks.
    Proc Natl Acad Sci U S A, Vol. 99, No. 20. (1 October 2002), pp. 12583-12588.
    by KI Goh, E Oh, H Jeong, B Kahng, D Kim
    posted to networks protein-interaction-networks use by Evangelia on 2008-03-18 14:29:56 as *** along with 8 people shivaram bigbossman merazzle zflavio grahamc marymcglo spool Borelli
  • Comparative Genomics of Centrality and Essentiality in Three Eukaryotic Protein-Interaction Networks
    Molecular Biology and Evolution, Vol. 22, No. 4. (April 2005), pp. 803-806.
    by Matthew W Hahn, Andrew D Kern
    posted to genomics networks protein-interaction-networks use by Evangelia on 2008-03-18 14:49:02 as *** along with 1 person dylanwalker
  • Protein complexes and functional modules in molecular networks.
    Proc Natl Acad Sci U S A, Vol. 100, No. 21. (14 October 2003), pp. 12123-12128.
    by V Spirin, LA Mirny
    posted to complexes interaction modularity networks protein protein-interaction-networks protein-protein use by Evangelia on 2008-03-18 12:37:36 as *** along with 13 people and 4 groups diamantis jiny camster kentsis ujh tmmurali dragonrez karfunkel joseph_x_zhou grahamc biehl ellakat carlk dbk-lab biophysics HIV_DR bioNetwork_sysBio
  • A Bayesian networks approach for predicting protein-protein interactions from genomic data.
    Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453.
    by R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, M Snyder, JF Greenblatt, M Gerstein
    posted to networks prediction protein-interaction-networks protein-protein use by Evangelia on 2008-03-18 12:35:16 as *** along with 19 people and 2 groups Robinder lfriedl balajis opheliav yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant nedwards karfunkel shung phoenixzxl penpen926 carlk frohike kdl EBI-regulation
  • Emergence of Scaling in Random Networks
    Science, Vol. 286, No. 5439. (15 October 1999), pp. 509-512.
    by Albert-László Barabási, Réka Albert
    posted to networks protein-interaction-networks use by Evangelia on 2008-03-18 14:31:23 as ** along with 28 people sWorgan czeller alanyang kaarsinogen diamantis pgastrein nolodie qwermish dragonrez shivaram tolosoft balicea ddahlem merazzle Borelli muraken lshaw gurkanbebek jaspervoskuilen rcrane ransombriggs idreams2 nkishan justforscraps kb Diego_Prada subhacom ethkim
  • A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).
    Proc Natl Acad Sci U S A, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353.
    by OG Troyanskaya, K Dolinski, AB Owen, RB Altman, D Botstein
    posted to bayesian networks protein-interaction-networks use by Evangelia on 2008-03-18 13:00:20 as *** along with 17 people and 2 groups BioGeek serak dragonrez okarsligil lfriedl balajis eckart_bindewald eweaver luispedro opheliav wnpx nedwards kallberg isimpson carlk srp33 frohike kdl Bioinformatics
  • STRING: known and predicted protein-protein associations, integrated and transferred across organisms.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by C von Mering, LJ Jensen, B Snel, SD Hooper, M Krupp, M Foglierini, N Jouffre, MA Huynen, P Bork
    posted to interaction networks protein-interaction-networks use by Evangelia on 2008-03-18 14:47:15 as **** along with 7 people and 2 groups kuhn lfriedl nickluscombe koller iris_2001 larsjuhljensen carlk kdl EBI-regulation
  • Community structure in social and biological networks.
    Proc Natl Acad Sci U S A, Vol. 99, No. 12. (11 June 2002), pp. 7821-7826.
    by M Girvan, ME Newman
    posted to interaction networks protein-interaction-networks protein-protein use by Evangelia on 2008-03-18 12:29:38 as *** along with 33 people and 4 groups cgaugain diamantis nolodie davidecellai qwermish pridkett korakot mrm rasca jtowle PiersYoung zqshen schaal shivaram yas lyongu herdivineshadow jirlong fwkroon adriandefroment gcalda noby andreacapocci marcio Diego_Prada pipkin stefanoallesina verdicchio compbio ellakat ganden chibatching jpbarrette Philosophy_of_Information Blog_and_Wiki_Research GraphVis T_lab
  • Communication between levels of transcriptional control improves robustness and adaptivity.
    Mol Syst Biol, Vol. 2 (2006)
    by AM Tsankov, CR Brown, MC Yu, MZ Win, PA Silver, JM Casolari
    posted to hubs protein-interaction-networks use by Evangelia on 2008-03-18 13:04:24 as ***
  • Lethality and centrality in protein networks
    Nature, Vol. 411, No. 6833. (3 May 2001), pp. 41-42.
    by H Jeong, SP Mason, AL Barabasi, ZN Oltvai
    posted to interaction lethality networks protein protein-interaction-networks use by Evangelia on 2008-03-18 12:41:50 as *** along with 16 people and 3 groups diamantis dylanwalker jiny kuhn cmmorel nickluscombe gurkanbebek jeremymiller timflutre ruvido gcalda grahamc lpfernandes iris_2001 cerca ethkim EBI-regulation GeschwindLab ParkinsonLab_at_MaRS
  • BioGRID: a general repository for interaction datasets.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by C Stark, BJ Breitkreutz, T Reguly, L Boucher, A Breitkreutz, M Tyers
    posted to protein-interaction-networks protein-protein use visualization networks by Evangelia on 2008-03-18 12:27:20 as ** along with 11 people cerca guhjy balajis koller nm lpfernandes chasmand carlk dragonrez tmmurali dylanwalker
  • A human protein-protein interaction network: a resource for annotating the proteome.
    Cell, Vol. 122, No. 6. (23 September 2005), pp. 957-968.
    by U Stelzl, U Worm, M Lalowski, C Haenig, FH Brembeck, H Goehler, M Stroedicke, M Zenkner, A Schoenherr, S Koeppen, J Timm, S Mintzlaff, C Abraham, N Bock, S Kietzmann, A Goedde, E Toksöz, A Droege, S Krobitsch, B Korn, W Birchmeier, H Lehrach, EE Wanker
    posted to protein protein-interaction-networks rev_ref by Evangelia on 2008-05-12 14:39:13 as read along with 10 people aelef biozhang2001 dragonrez kuhn textoris Schmidtc maryee eukfn pattisyang antonkratz
  • Evolutionary and Physiological Importance of Hub Proteins
    PLoS Computational Biology, Vol. 2, No. 7. (1 July 2006), e88.
    by Nizar N Batada, Laurence D Hurst, Mike Tyers
    posted to hub networks protein-interaction-networks use by Evangelia on 2008-03-18 12:22:21 as *** along with 7 people davidecellai diamantis phoenixzxl aswin IbnBio lpfernandes Ema
  • Error and attack tolerance of complex networks
    Nature, Vol. 406, No. 6794. (27 July 2000), pp. 378-382.
    by Reka Albert, Hawoong Jeong, Albert-Laszlo Barabasi
    posted to interaction networks protein-interaction-networks use by Evangelia on 2008-03-18 14:34:33 as *** along with 15 people and 2 groups kaarsinogen korakot alexisgallagher shivaram cmmorel balicea yoh mmt jaspervoskuilen timflutre thehajime karfunkel stefanoallesina tjpp dylanwalker Philosophy_of_Information Blog_and_Wiki_Research
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