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Tag protein-interaction [114 articles]

Recent papers classified by the tag protein-interaction.
  • Structural Similarity Enhances Interaction Propensity of Proteins.
    J Mol Biol (10 November 2006)
    by D B B Lukatsky, B E E Shakhnovich, J Mintseris, E I I Shakhnovich
    posted to protein-interaction by wilbur on 2007-12-15 17:31:12 as *** along with 2 people choonpeng kgutwin
  • In vivo selection of intrabodies specifically targeting protein-protein interactions: A general platform for an "undruggable" class of disease targets.
    Journal of biotechnology (4 March 2008)
    by Michela Visintin, Teresa Melchionna, Isabella Cannistraci, Antonino Cattaneo
    posted to antibodies antibody protein-interaction protein-protein by niallhaslam on 2008-04-11 08:54:59 as **
  • Large-scale screening for novel low-affinity extracellular protein interactions
    Genome Res. (22 February 2008), gr.7187808.
    by Mark K Bushell, Christian Sollner, Benjamin Schuster-Boeckler, Alex Bateman, Gavin J Wright
    posted to protein-interaction protein-network protein-protein by niallhaslam on 2008-04-29 08:55:36 as ** along with 9 people tmmurali neils Dualsystems grahamc zwang guhjy carlk kluck paolomarcatili
  • Antibody microarray-based oncoproteomics
    Expert Opinion on Biological Therapy, Vol. 6, No. 8. (August 2006), pp. 833-838.
    by Borrebaeck, Carl Ak
    posted to affinity protein-array protein-interaction protein-protein proteomics by niallhaslam on 2008-04-22 09:45:43 as *****
  • Identification of the HIV-1 gp41 core-binding motif - HXXNPF
    FEBS Letters, Vol. 580, No. 20. (4 September 2006), pp. 4807-4814.
    by Jing-He Huang, Zu-Qiang Liu, Shuwen Liu, Shibo Jiang, Ying-Hua Chen
    posted to antibodies antibody interactions motif protein-interaction protein-protein by niallhaslam on 2008-02-13 15:02:26 as ***
  • Revealing static and dynamic modular architecture of the eukaryotic protein interaction network
    Mol Syst Biol, Vol. 3 (24 April 2007)
    by Kakajan Komurov, Michael White
    posted to modular network protein-interaction by mingzhi on 2007-11-16 13:11:04 as ** along with 8 people Borelli tomhebbron massivemayhem nicoleq zwang phoenixzxl ellakat carlk
  • Probabilistic model of the human protein-protein interaction network
    Nature Biotechnology, Vol. 23, No. 8., pp. 951-959.
    by Daniel R Rhodes, Scott A Tomlins, Sooryanarayana Varambally, Vasudeva Mahavisno, Terrence Barrette, Shanker Kalyana-Sundaram, Debashis Ghosh, Akhilesh Pandey, Arul M Chinnaiyan
    posted to human network protein-interaction by mingzhi on 2007-11-16 13:19:15 as ** along with 14 people and 2 groups aelef cswinburne kentsis lfriedl balajis opheliav wnpx nickluscombe eukfn iris_2001 antonkratz maralena phoenixzxl penpen926 kdl EBI-regulation
  • An integrated mass spectrometric and computational framework for the analysis of protein interaction networks
    Nature Biotechnology, Vol. 25, No. 3. (25 February 2007), pp. 345-352.
    by Oliver Rinner, Lukas N Mueller, Martin Hubálek, Markus Müller, Matthias Gstaiger, Ruedi Aebersold
    posted to mass network protein-interaction spectrometic by mingzhi on 2007-11-16 13:10:40 as ** along with 5 people and 1 group guhjy okarsligil jfr Dualsystems nedwards Bioinformatics
  • Correlated mutations: Advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families.
    Proteins (28 February 2006)
    by Inbal Halperin, Haim Wolfson, Ruth Nussinov
    posted to coevolution protein-interaction by mingzhi on 2007-12-22 08:55:04 as ** along with 7 people bicko gbart ramensky cjeans tale friendpine Lombardo_7
  • Making protein interactions druggable: targeting PDZ domains.
    Nat Rev Drug Discov, Vol. 3, No. 12. (December 2004), pp. 1047-1056.
    by KK Dev
    posted to drug-development protein-interaction review by mdimmic on 2005-07-21 22:38:12 as **** along with 1 person guhjy
  • notes Dynamic complex formation during the yeast cell cycle.
    Science, Vol. 307, No. 5710. (4 February 2005), pp. 724-727.
    by U de Lichtenberg, LJ Jensen, S Brunak, P Bork
    posted to ipam protein-interaction by mdimmic on 2005-12-12 18:25:25 as ** along with 11 people and 1 group chad_davis balajis wnpx koller massivemayhem cjeans arne phoenixzxl larsjuhljensen carlk gjuggler dIEMoSIRIS
  • An integrated approach for inference and mechanistic modeling for advancing drug development
    FEBS Letters, Vol. 579, No. 8. (21 March 2005), pp. 1878-1883.
    by Sergej V Aksenov, Bruce Church, Anjali Dhiman, Anna Georgieva, Ramesh Sarangapani, Gabriel Helmlinger, Iya G Khalil
    posted to drug-development protein-interaction by mdimmic on 2005-06-02 22:05:37 as ***** along with 2 people snuppepuppan Borelli
  • Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces.
    Proc Natl Acad Sci U S A, Vol. 100, No. 10. (13 May 2003), pp. 5772-5777.
    by B Ma, T Elkayam, H Wolfson, R Nussinov
    posted to coevolution protein-interaction by mdimmic on 2005-03-24 22:36:04 as ***** along with 8 people and 2 groups barry bicko lyongu nickolay choonpeng cjeans carlescorbi ladab structural_bioinformatics Bioinformatics
  • Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues.
    J Mol Biol, Vol. 345, No. 5. (4 February 2005), pp. 1281-1294.
    by O Keskin, B Ma, R Nussinov
    posted to coevolution protein-interaction by mdimmic on 2005-03-24 22:35:40 as ***** along with 8 people and 2 groups ana barry baaden okarsligil bicko j3xucite bilab xz structural_bioinformatics Bioinformatics
  • Use of Logic Relationships to Decipher Protein Network Organization
    Science, Vol. 306, No. 5705. (24 December 2004), pp. 2246-2249.
    by Peter M Bowers, Shawn J Cokus, David Eisenberg, Todd O Yeates
    posted to protein-interaction by mdimmic on 2005-06-02 21:41:59 as ***** along with 3 people and 1 group lfriedl opheliav wnpx kdl
  • Analysis of accessible surface of residues in proteins.
    Protein Sci, Vol. 12, No. 7. (July 2003), pp. 1406-1417.
    by L Lins, A Thomas, R Brasseur
    posted to epitope-design protein-interaction by mdimmic on 2005-10-13 23:15:18 as **** along with 1 person ashaytan
  • Iterative Cluster Analysis of Protein Interaction Data
    Bioinformatics, Vol. 21, No. 3. (01 February 2005), 364.
    by Vicente Arnau, Sergio Mars, Ignacio Marin
    posted to protein-interaction by mdimmic on 2005-02-08 19:08:14 as *** along with 3 people jiny tny AbnerCYH
  • Development of unified statistical potentials describing protein-protein interactions.
    Biophys J, Vol. 84, No. 3. (March 2003), pp. 1895-1901.
    by H Lu, L Lu, J Skolnick
    posted to coevolution protein-interaction by mdimmic on 2005-03-24 22:33:29 as ***** along with 7 people bicko chad_davis cjeans selrac iris_2001 wilbur kgutwin
  • Small-molecule inhibitors of protein-protein interactions: progressing towards the dream.
    Nat Rev Drug Discov, Vol. 3, No. 4. (April 2004), pp. 301-317.
    by MR Arkin, JA Wells
    posted to drug-development protein-interaction review by mdimmic on 2005-07-21 22:40:49 as ***** along with 6 people dgruiz lna bicko dailybiomed Dualsystems ramensky
  • Fast Adaptive Coevolution of Nuclear and Mitochondrial Subunits of ATP Synthetase in Orangutan.
    Mol Biol Evol, Vol. 22, No. 3. (March 2005), pp. 716-724.
    by Maria Pilar P Bayona-Bafaluy, Stefan Müller, Carlos T T Moraes
    posted to coevolution protein-interaction by mdimmic on 2005-02-23 21:38:48 as *****
  • iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions
    Bioinformatics, Vol. 21, No. 3. (01 February 2005), 410.
    by Robert D Finn, Mhairi Marshall, Alex Bateman
    posted to coevolution protein-interaction by mdimmic on 2005-02-08 19:09:25 as ***** along with 7 people and 2 groups kshameer barry chad_davis choonpeng massivemayhem antonkratz kintoki structural_bioinformatics Bioinformatics
  • Predicting protein-protein interactions using signature products
    Bioinformatics, Vol. 21, No. 2., 218.
    by Shawn Martin, Diana Roe, Jean-Loup Faulon
    posted to protein-interaction by mdimmic on 2005-02-08 19:10:19 as ** along with 3 people ziquje cjeans carlk
  • Discovery of stable and significant binding motif pairs from PDB complexes and protein interaction datasets
    Bioinformatics, Vol. 21, No. 3. (01 February 2005), 314.
    by Haiquan Li, Jinyan Li
    posted to protein-interaction by mdimmic on 2005-02-08 19:07:45 as ***
  • Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome.
    Genome Res, Vol. 13, No. 6A. (June 2003), pp. 1146-1154.
    by L Lu, AK Arakaki, H Lu, J Skolnick
    posted to coevolution protein-interaction by mdimmic on 2005-03-24 22:33:48 as ***** along with 5 people and 1 group bicko lfriedl chad_davis ruvido cjeans kdl
  • Comparison of the protein-protein interfaces in the p53-DNA crystal structures: Towards elucidation of the biological interface.
    Proc Natl Acad Sci U S A, Vol. 102, No. 11. (15 March 2005), pp. 3988-3993.
    by B Ma, Y Pan, K Gunasekaran, RB Venkataraghavan, AJ Levine, R Nussinov
    posted to coevolution protein-interaction by mdimmic on 2005-03-24 22:35:51 as *****
  • Binding of small molecules to an adaptive protein-protein interface.
    Proc Natl Acad Sci U S A, Vol. 100, No. 4. (18 February 2003), pp. 1603-1608.
    by MR Arkin, M Randal, WL DeLano, J Hyde, TN Luong, JD Oslob, DR Raphael, L Taylor, J Wang, RS McDowell, JA Wells, AC Braisted
    posted to drug-development protein-disorder protein-interaction by mdimmic on 2005-07-21 22:44:38 as *** along with 2 people and 2 groups sangeetha chgjb Bioinformatics insilicodrug
  • BIOCHEMISTRY: Not Comparable, But Complementary
    Science, Vol. 322, No. 5898. (3 October 2008), pp. 56-57.
    by Lars J Jensen, Peer Bork
    posted to network-analysis protein-interaction-network protein-interaction by marck on 2008-10-03 07:50:20 as ***** along with 3 people lfriedl dullhunk larsjuhljensen
  • Implications for domain fusion protein-protein interactions based on structural information.
    BMC Bioinformatics, Vol. 5 (26 October 2004)
    by JM Chia, PR Kolatkar
    posted to domain jerm protein-interaction by jermth on 2006-08-31 04:01:42 as **
  • In it for the long haul
    Nat Biotech, Vol. 24, No. 2. (February 2006), pp. 115-115.
    posted to all databases data-persistance data-sharing example funding history protein-interaction pubmed by hpiwowar on 2007-11-23 22:59:02 as read along with 2 people Enro dullhunk
  • Affinity purification-mass spectrometry. Powerful tools for the characterization of protein complexes.
    Eur J Biochem, Vol. 270, No. 4. (February 2003), pp. 570-578.
    by A Bauer, B Kuster
    posted to protein-interaction tap-tag taptag by bala to the group DictyosteliumGroup on 2006-09-25 16:11:49 as ** along with 3 people helenc stonest carlk
  • A yeast two-hybrid smart-pool-array system for protein-interaction mapping
    Nat Meth, Vol. 4, No. 5. (May 2007), pp. 405-407.
    by Fulai Jin, Larisa Avramova, Jing Huang, Tony Hazbun
    posted to protein-interaction smart-pool-array two-hybrid by Dualsystems on 2007-04-30 08:48:16 as ***** along with 2 people guhjy zwang
  • beta-Amyloid(1-42) binds to alpha7 nicotinic acetylcholine receptor with high affinity. Implications for Alzheimer's disease pathology.
    J Biol Chem, Vol. 275, No. 8. (25 February 2000), pp. 5626-5632.
    by HY Wang, DH Lee, MR D'Andrea, PA Peterson, RP Shank, AB Reitz
    posted to alzheimer app protein-interaction by Dualsystems on 2006-12-11 15:28:47 as **
  • A dual luciferase multiplexed high-throughput screening platform for protein-protein interactions.
    J Biomol Screen, Vol. 8, No. 6. (December 2003), pp. 676-684.
    by BW Nieuwenhuijsen, Y Huang, Y Wang, F Ramirez, G Kalgaonkar, KH Young
    posted to luciferase protein-interaction by Dualsystems on 2008-01-24 14:46:14 as **
  • Nucleation and the Transition State of the SH3 Domain
    Journal of Molecular Biology, Vol. 349, No. 2. (3 June 2005), pp. 424-434.
    by Isaac A Hubner, Katherine A Edmonds, Eugene I Shakhnovich
    posted to protein-interaction protein-folding modular by choonpeng on 2006-12-11 01:03:50 as read
  • The origins and evolution of functional modules: lessons from protein complexes.
    Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1467. (29 March 2006), pp. 507-517.
    by JB Pereira-Leal, ED Levy, SA Teichmann
    posted to protein-interaction modular by choonpeng on 2007-01-19 07:49:49 as read along with 4 people agustinarce bicko cjeans cmzmasek
  • Disruption of Interdomain Interactions via Partial Calcium Occupancy of Calmodulin
    Biochemistry, Vol. 46, No. 15. (17 April 2007), pp. 4580-4588.
    by CB Boschek, TC Squier, DJ Bigelow
    posted to multi-domain protein-interaction by choonpeng on 2007-04-10 16:25:55 as read
  • Docking interactions in protein kinase and phosphatase networks
    Current Opinion in Structural Biology, Vol. 16, No. 6. (December 2006), pp. 676-685.
    by Attila Remenyi, Matthew C Good, Wendell A Lim
    posted to protein-interaction by choonpeng on 2006-12-02 11:48:44 as ** along with 1 person niallhaslam
  • Long-range cooperative binding effects in a T cell receptor variable domain.
    Proc Natl Acad Sci U S A, Vol. 103, No. 26. (27 June 2006), pp. 9867-9872.
    by B Moza, RA Buonpane, P Zhu, CA Herfst, AK Rahman, JK McCormick, DM Kranz, EJ Sundberg
    posted to cooperativity protein-interaction by choonpeng on 2007-02-25 13:54:15 as read
  • Extra domains in secondary transport carriers and channel proteins
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1758, No. 10. (October 2006), pp. 1557-1579.
    by Ravi D Barabote, Dorjee G Tamang, Shannon N Abeywardena, Neda S Fallah, Jeffrey Y Fu, Jeffrey K Lio, Pegah Mirhosseini, Ronnie Pezeshk, Sheila Podell, Marnae L Salampessy
    posted to multi-domain protein-interaction review by choonpeng on 2006-11-28 05:13:02 as read
  • Reading protein modifications with interaction domains
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 7., pp. 473-483.
    by Bruce T Seet, Ivan Dikic, Ming-Ming Zhou, Tony Pawson
    posted to modular protein-interaction by choonpeng on 2007-06-01 14:15:00 as *** along with 3 people laurabailey cjeans mingzhi
  • Signaling complexes: biophysical constraints on intracellular communication.
    Annu Rev Biophys Biomol Struct, Vol. 27 (1998), pp. 59-75.
    by D Bray
    posted to protein-interaction review by choonpeng on 2007-10-05 09:34:59 as read
  • The evolution of domain arrangements in proteins and interaction networks.
    Cell Mol Life Sci, Vol. 62, No. 4. (February 2005), pp. 435-445.
    by E Bornberg-Bauer, F Beaussart, SK Kummerfeld, SA Teichmann, J Weiner
    posted to protein-interaction multi-domain modular by choonpeng on 2007-01-19 07:39:24 as read along with 4 people agustinarce cjeans cmzmasek gulkur
  • Forced detachment of the CD2-CD58 complex.
    Biophys J, Vol. 84, No. 4. (April 2003), pp. 2223-2233.
    by MV Bayas, K Schulten, D Leckband
    posted to force-probe-md protein-folding protein-interaction salt-bridge by choonpeng on 2007-09-04 11:11:08 as read
  • WATGEN: An algorithm for modeling water networks at protein-protein interfaces
    Journal of Computational Chemistry, Vol. 28, No. 14. (2007), pp. 2241-2251.
    by Huynh-Hoa Bui, Alexandra J Schiewe, Ian S Haworth
    posted to protein-interaction by choonpeng on 2007-08-21 01:57:45 as ***
  • Conformational spread: the propagation of allosteric states in large multiprotein complexes.
    Annu Rev Biophys Biomol Struct, Vol. 33 (2004), pp. 53-73.
    by D Bray, T Duke
    posted to protein-interaction review by choonpeng on 2007-10-05 09:32:59 as *** along with 3 people leemary4 cactus evanse
  • Complement C1q-target proteins recognition is inhibited by electric moment effectors
    Journal of Molecular Recognition, Vol. 20, No. 5. (2007), pp. 405-415.
    by Lubka Roumenina, Svetlana Bureeva, Alexander Kantardjiev, David Karlinsky, Julian E Andia-Pravdivy, Robert Sim, Alexander Kaplun, Michael Popov, Uday Kishore, Boris Atanasov
    posted to electrostatics protein-interaction by choonpeng on 2007-12-12 08:53:20 as ***
  • Comprehensive statistical analysis of residues interaction specificity at protein-protein interfaces.
    Proteins, Vol. 67, No. 4. (1 June 2007), pp. 1060-1077.
    by A Anashkina, E Kuznetsov, N Esipova, V Tumanyan
    posted to protein-interaction by choonpeng on 2008-01-13 12:37:17 as *** along with 2 people higueruelo bicko
  • Solution Structure and Sugar-Binding Mechanism of Mouse Latrophilin-1 RBL: a 7TM Receptor-Attached Lectin-Like Domain
    Structure, Vol. 16, No. 6. (11 June 2008), pp. 944-953.
    by Ioannis Vakonakis, Tobias Langenhan, Simone Prömel, Andreas Russ, Iain D Campbell
    posted to protein-interaction by choonpeng on 2008-06-11 10:02:32 as ***
  • Structure networks of <I>E. coli</I> glutaminyl-tRNA synthetase: Effects of ligand binding
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by R Sathyapriya, Saraswathi Vishveshwara
    posted to protein-interaction protein-stability by choonpeng on 2007-05-21 07:33:06 as **** along with 1 person naitsabes
  • The change of protein intradomain mobility on ligand binding: is it a commonly observed phenomenon?
    Biophys J, Vol. 91, No. 8. (15 October 2006), pp. 3002-3013.
    by SO Yesylevskyy, VN Kharkyanen, AP Demchenko
    posted to allostery protein-interaction by choonpeng on 2006-12-29 01:36:25 as **
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