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Tag protease [80 articles]

Recent papers classified by the tag protease.
  • Mechanism-based profiling of enzyme families.
    Chem Rev, Vol. 106, No. 8. (August 2006), pp. 3279-3301.
    by MJ Evans, BF Cravatt
    posted to kinase protease review targetbeads usp by Yanno on 2007-10-30 16:54:11 as read
  • Proteomic profiling of metalloprotease activities with cocktails of active-site probes
    Nat Chem Biol, Vol. 2, No. 5. (May 2006), pp. 274-281.
    by Stephan A Sieber, Sherry Niessen, Heather S Hoover, Benjamin F Cravatt
    posted to assay drugdiscovery library method protease by Yanno on 2006-05-15 14:29:37 as ***
  • notes Absorption of poorly water soluble drugs subject to apical efflux using phospholipids as solubilizers in the Caco-2 cell model.
    Eur J Pharm Biopharm (23 August 2006)
    by Susanne B B Kapitza, Bettina R R Michel, Peter van Hoogevest, Mathew L S L Leigh, Georgios Imanidis
    posted to hiv protease by xiannong on 2006-11-09 18:02:14 as **
  • Different evolutionary histories of kringle and protease domains in serine proteases: a typical example of domain evolution.
    Journal of molecular evolution, Vol. 40, No. 3. (March 1995), pp. 331-336.
    by K Ikeo, K Takahashi, T Gojobori
    posted to domain evolution protease by tny on 2008-08-18 06:53:42 as **
  • Proteases to die for
    Genes Dev., Vol. 12, No. 11. (1 June 1998), pp. 1551-1570.
    by Vincent Cryns, Junying Yuan
    posted to protease by soojin on 2008-02-15 04:14:21 as **
  • Crystal Structure of the NS3 Protease-Helicase from Dengue Virus
    J. Virol., Vol. 82, No. 1. (1 January 2008), pp. 173-183.
    by Dahai Luo, Ting Xu, Cornelia Hunke, Gerhard Gruber, Subhash G Vasudevan, Julien Lescar
    posted to crystal dengue helicase ns3 protease structure virus by sci91078 on 2007-12-17 02:08:33 as **
  • Microwave-assisted specific chemical digestion for rapid protein identification.
    Proteomics, Vol. 6, No. 2. (January 2006), pp. 586-591.
    by L Hua, TY Low, SK Sze
    posted to protease protein-analysis proteomics by robert on 2008-06-06 16:15:39 as **
  • Tobacco etch virus protease: mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency.
    Protein Eng, Vol. 14, No. 12. (December 2001), pp. 993-1000.
    by RB Kapust, J Tözsér, JD Fox, DE Anderson, S Cherry, TD Copeland, DS Waugh
    posted to cleavage cloning expression fusion protease by robert on 2006-02-27 10:18:18 as **
  • A yeast-based growth assay for the analysis of site-specific proteases.
    Nucleic acids research, Vol. 31, No. 4. (15 February 2003)
    by F Köhler
    posted to cleavage ecoli expression protease screening by robert on 2008-04-15 15:42:35 as **
  • Processive degradation of nascent polypeptides, triggered by tandem AGA codons, limits the accumulation of recombinant tobacco etch virus protease in Escherichia coli BL21(DE3).
    Protein expression and purification, Vol. 24, No. 1. (February 2002), pp. 61-70.
    by RB Kapust, KM Routzahn, DS Waugh
    posted to cleavage cloning ecoli expression protease by robert on 2008-04-15 15:46:12 as **
  • The P1' specificity of tobacco etch virus protease.
    Biochem Biophys Res Commun, Vol. 294, No. 5. (28 June 2002), pp. 949-955.
    by RB Kapust, J Tözsér, TD Copeland, DS Waugh
    posted to cleavage expression fusion protease by robert on 2006-02-27 10:17:11 as **
  • Cleavage at aspartic acid.
    Methods in enzymology, Vol. 91 (1983), pp. 324-332.
    by AS Inglis
    posted to cleavage protease protein-analysis proteomics by robert on 2008-06-06 15:59:36 as **
  • Controlled intracellular processing of fusion proteins by TEV protease.
    Protein expression and purification, Vol. 19, No. 2. (July 2000), pp. 312-318.
    by RB Kapust, DS Waugh
    posted to cleavage ecoli expression protease purification by robert on 2008-04-15 15:47:09 as **
  • Chemical cleavage at aspartyl residues for protein identification.
    Analytical chemistry, Vol. 73, No. 22. (15 November 2001), pp. 5395-5402.
    by A Li, RC Sowder, LE Henderson, SP Moore, DJ Garfinkel, RJ Fisher
    posted to cleavage protease protein-analysis proteomics by robert on 2008-06-06 14:26:00 as **
  • Peptide bond formation mediated by substrate mimetics. Structure-guidedoptimization of trypsin for synthesis.
    European journal of biochemistry / FEBS, Vol. 267, No. 24. (December 2000), pp. 7024-7030.
    by R Grünberg, I Domgall, R Günther, K Rall, HJ Hofmann, F Bordusa
    posted to trypsin synthesis protease engineering docking by raik on 2008-09-12 14:30:55 as read
  • ATP-dependent proteases of bacteria: recognition logic and operating principles.
    Trends Biochem Sci, Vol. 31, No. 12. (December 2006), pp. 647-653.
    by TA Baker, RT Sauer
    posted to unfolding ratchet protease power-stroke by pdelosri on 2007-01-28 14:37:59 as ** along with 1 group EPFL_SB_ITP_LBS
  • An Entamoeba histolytica rhomboid protease with atypical specificity cleaves a surface lectin involved in phagocytosis and immune evasion
    Genes Dev., Vol. 22, No. 12. (15 June 2008), pp. 1636-1646.
    by Leigh A Baxt, Rosanna P Baker, Upinder Singh, Sinisa Urban
    posted to protease rhomboid by paulschlesinger on 2008-06-20 23:56:50 as **
  • Mitochondrial Rhomboid PARL Regulates Cytochrome c Release during Apoptosis via OPA1-Dependent Cristae Remodeling
    Cell, Vol. 126, No. 1. (14 July 2006), pp. 163-175.
    by Sara Cipolat, Tomasz Rudka, Dieter Hartmann, Veronica Costa, Lutgarde Serneels, Katleen Craessaerts, Kristine Metzger, Christian Frezza, Wim Annaert, Luciano D'Adamio, Carmen Derks, Tim Dejaegere, Luca Pellegrini, Rudi D'Hooge, Luca Scorrano, Bart De Strooper
    posted to apoptosis mitochondria protease rhomboid by paulschlesinger on 2008-02-15 00:45:36 as **
  • OPA1 and PARL Keep a Lid on Apoptosis
    Cell, Vol. 126, No. 1. (14 July 2006), pp. 27-29.
    by Eyal Gottlieb
    posted to apoptosis membrane mitochondria protease by paulschlesinger on 2008-02-15 00:33:14 as ** along with 1 person laurabailey
  • OPA1 Controls Apoptotic Cristae Remodeling Independently from Mitochondrial Fusion
    Cell, Vol. 126, No. 1. (14 July 2006), pp. 177-189.
    by Christian Frezza, Sara Cipolat, Martins, Massimo Micaroni, Galina V Beznoussenko, Tomasz Rudka, Davide Bartoli, Roman S Polishuck, Nika N Danial, Bart De Strooper, Luca Scorrano
    posted to apoptosis mitochodria protease remodeling rhomboid by paulschlesinger on 2008-02-15 00:38:48 as **
  • Enzymatic cleavage of fusion proteins using immobilised protease 3C
    Protein Expression and Purification, Vol. 47, No. 2. (June 2006), pp. 422-426.
    by M Hedhammar, HR Jung, S Hober
    posted to methods protease protein purification by pansapiens on 2006-05-31 08:48:14 as **
  • Proteases' prime targets revealed
    Nature Biotechnology, Vol. 26, No. 6., pp. 652-653.
    by Scott L Diamond, Doron Greenbaum
    posted to specificity protease by nitiniitk on 2008-10-16 08:57:00 as ** along with 1 person nedwards
  • Allergen-dependent solubilization of IL-13 receptor alpha2 reveals a novel mechanism to regulate allergy.
    The Journal of allergy and clinical immunology, Vol. 119, No. 2. (February 2007), pp. 375-383.
    by MO Daines, W Chen, Y Tabata, BA Walker, AM Gibson, JA Masino, MR Warrier, CL Daines, SE Wenzel, GK Hershey
    posted to allergy house-dust il-13 protease by nickpitman on 2008-06-17 22:48:39 as ***
  • PMAP: databases for analyzing proteolytic events and pathways
    Nucl. Acids Res. (8 October 2008), gkn683.
    by Yoshinobu Igarashi, Emily Heureux, Kutbuddin S Doctor, Priti Talwar, Svetlana Gramatikova, Kosi Gramatikoff, Ying Zhang, Michael Blinov, Salmaz S Ibragimova, Sarah Boyd, Boris Ratnikov, Piotr Cieplak, Adam Godzik, Jeffrey W Smith, Andrei L Osterman, Alexey M Eroshkin
    posted to substrate specificity protease pathways database by neils on 2008-10-09 03:20:27 as **
  • Latent Fluorophores Based on a Self-Immolative Linker Strategy and Suitable for Protease Sensing
    Bioconjugate Chem. (22 July 2008)
    by Jean-Alexandre Richard, Yves Meyer, Valérie Jolivel, Marc Massonneau, Raphaël Dumeunier, David Vaudry, Hubert Vaudry, Pierre-Yves Renard, Anthony Romieu
    posted to fluorophore protease by nahnah on 2008-07-23 05:19:56 as **
  • Protease-Sensitive Fluorescent Nanofibers
    Bioconjugate Chem., Vol. 18, No. 6. (21 November 2007), pp. 1701-1704.
    by Benedict Law, Ralph Weissleder, Ching-Hsuan Tung
    posted to ccne-grant fitc fluorescent-imaging mit-mgh-ccne nanofibers peptide-polymer-conjugate protease protease-sensitive substrate-cleavage-site transmission-electron-microscopy upa-peptide-substrate by ml115 on 2008-02-25 15:52:50 as read along with 1 person and 1 group sobolevnrm baker-group
  • From nonpeptide toward noncarbon protease inhibitors: metallacarboranes as specific and potent inhibitors of HIV protease.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15394-15399.
    by P Cígler, M Kozísek, P Rezácová, J Brynda, Z Otwinowski, J Pokorná, J Plesek, B Grüner, L Dolecková-Maresová, M Mása, J Sedlácek, J Bodem, HG Kräusslich, V Král, J Konvalinka
    posted to hiv inhibitor protease by mijogiffin on 2008-08-21 18:06:58 as **
  • Individual contributions of mutant protease and reverse transcriptase to viral infectivity, replication, and protein maturation of antiretroviral drug-resistant human immunodeficiency virus type 1.
    Journal of virology, Vol. 75, No. 7. (April 2001), pp. 3291-3300.
    by G Bleiber, M Munoz, A Ciuffi, P Meylan, A Telenti
    posted to resistance replication protease hiv by mijogiffin on 2008-09-03 23:10:32 as **
  • Targeting the Open-Flap Conformation of HIV-1 Protease with Pyrrolidine-Based Inhibitors.
    ChemMedChem (21 August 2008)
    by Jark Böttcher, Andreas Blum, Stefanie Dörr, Andreas Heine, Wibke E E Diederich, Gerhard Klebe
    posted to hiv inhibitor protease structure by mijogiffin on 2008-08-29 20:04:55 as **** along with 1 person miorel
  • Structural characterization of B and non-B subtypes of HIV-protease: insights into the natural susceptibility to drug resistance development.
    Journal of molecular biology, Vol. 369, No. 4. (15 June 2007), pp. 1029-1040.
    by M Sanches, S Krauchenco, NH Martins, A Gustchina, A Wlodawer, I Polikarpov
    posted to hiv inhibitor protease resistance tl-3 by mijogiffin on 2008-08-29 17:36:07 as **
  • Analysis of the S3 and S3′ subsite specificities of feline immunodeficiency virus (FIV) protease: Development of a broad-based protease inhibitor efficacious against FIV, SIV, and HIV in vitro and ex vivo
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 3. (3 February 1998), pp. 939-944.
    by Taekyu Lee, Gary S Laco, Bruce E Torbett, Howard S Fox, Danica L Lerner, John H Elder, Chi-Huey Wong
    posted to cloning hiv protease by mijogiffin on 2008-08-21 21:05:51 as **
  • A Potent Human Immunodeficiency Virus Type 1 Protease Inhibitor, UIC-94003 (TMC-126), and Selection of a Novel (A28S) Mutation in the Protease Active Site
    J. Virol., Vol. 76, No. 3. (1 February 2002), pp. 1349-1358.
    by Kazuhisa Yoshimura, Ryohei Kato, Mark F Kavlick, Aline Nguyen, Victor Maroun, Kenji Maeda, Khaja A Hussain, Arun K Ghosh, Sergei V Gulnik, John W Erickson, Hiroaki Mitsuya
    posted to selection resistance protease inhibitor hiv cloning by mijogiffin on 2008-09-03 19:08:57 as read
  • Automated Molecular Simulation Based Binding Affinity Calculator for Ligand-Bound HIV-1 Proteases.
    Journal of chemical information and modeling (19 August 2008)
    by S K Sadiq, David Wright, Simon J Watson, Stefan J Zasada, Ileana Stoica, Peter V Coveney
    posted to dynamics hiv molecular protease by mijogiffin on 2008-08-25 21:36:38 as ** along with 2 people and 1 group ibuch skoddet Nielsen group
  • Mapping natural polymorphisms of hepatitis C virus NS3/4A protease and antiviral resistance to inhibitors in worldwide isolates.
    Antiviral therapy, Vol. 13, No. 4. (2008), pp. 481-494.
    by LL Xavier, A Moya, F Gonzàlez-Candelas
    posted to hcv protease resistance by mccownm on 2008-08-05 16:40:09 as **
  • A transient cell-based phenotype assay for hepatitis C NS3/4A protease: Application to potency determinations of a novel macrocyclic inhibitor against diverse protease sequences isolated from plasma infected with HCV.
    Journal of virological methods (24 June 2008)
    by Steven W W Ludmerer, Donald J J Graham, Mihir Patel, Kevin Gilbert, Mark Stahlhut, David B B Olsen
    posted to hcv protease by mccownm on 2008-06-30 16:38:18 as **
  • Bacterial cell division protein FtsZ is stable against degradation by AAA family protease FtsH in Escherichia coli cells.
    J Basic Microbiol, Vol. 47, No. 3. (June 2007), pp. 251-259.
    by R Srinivasan, P Ajitkumar
    posted to ecoli ftsz newtrp protease by madhadron on 2007-09-26 15:32:31 as **
  • An increased content of protease La, the lon gene product, increases protein degradation and blocks growth in Escherichia coli.
    J Biol Chem, Vol. 262, No. 10. (5 April 1987), pp. 4508-4515.
    by SA Goff, AL Goldberg
    posted to newtrp protease protein by madhadron on 2007-09-26 16:07:23 as **
  • Proteases and their targets in Escherichia coli.
    Annu Rev Genet, Vol. 30 (1996), pp. 465-506.
    by S Gottesman
    posted to ecoli newtrp protease review by madhadron on 2007-09-26 16:12:39 as **
  • ATP-dependent proteases in prokaryotic and eukaryotic cells.
    Semin Cell Biol, Vol. 1, No. 6. (December 1990), pp. 423-432.
    by AL Goldberg
    posted to newtrp protease review by madhadron on 2007-09-26 16:12:27 as **
  • Degradation by proteases Lon, Clp and HtrA, of Escherichia coli proteins aggregated in vivo by heat shock; HtrA protease action in vivo and in vitro.
    Mol Microbiol, Vol. 22, No. 3. (November 1996), pp. 555-571.
    by E Laskowska, D Kuczyńska-Wiśnik, J Skórko-Glonek, A Taylor
    posted to aggregation newtrp protease protein by madhadron on 2007-09-26 15:58:48 as **
  • Support for a potential role of E. coli oligopeptidase A in protein degradation.
    Biochem Biophys Res Commun, Vol. 359, No. 3. (3 August 2007), pp. 486-490.
    by R Jain, MK Chan
    posted to ecoli newtrp protease protein by madhadron on 2007-09-26 15:56:09 as **
  • Two peptide sequences can function cooperatively to facilitate binding and unfolding by ClpA and degradation by ClpAP.
    Proc Natl Acad Sci U S A, Vol. 103, No. 4. (24 January 2006), pp. 909-914.
    by JR Hoskins, S Wickner
    posted to ecoli newtrp protease by madhadron on 2007-09-26 16:03:03 as **
  • Species variation in ATP-dependent protein degradation: protease profiles differ between mycobacteria and protease functions differ between Mycobacterium smegmatis and Escherichia coli.
    Gene, Vol. 231, No. 1-2. (29 April 1999), pp. 95-104.
    by N Knipfer, A Seth, SG Roudiak, TE Shrader
    posted to msmegmatis newtrp protease by madhadron on 2007-09-26 16:01:37 as **
  • The lon protease from Mycobacterium smegmatis: molecular cloning, sequence analysis, functional expression, and enzymatic characterization.
    Biochemistry, Vol. 37, No. 1. (6 January 1998), pp. 377-386.
    by SG Roudiak, A Seth, N Knipfer, TE Shrader
    posted to msmegmatis newtrp protease by madhadron on 2007-09-26 16:01:49 as **
  • ATP-dependent proteases that also chaperone protein biogenesis.
    Trends Biochem Sci, Vol. 22, No. 4. (April 1997), pp. 118-123.
    by CK Suzuki, M Rep, JM van Dijl, K Suda, LA Grivell, G Schatz
    posted to chaperone ecoli newtrp protease by madhadron on 2007-09-26 16:09:48 as **
  • Molecular cloning of the Lon protease gene from Thermus thermophilus HB8 and characterization of its gene product.
    Eur J Biochem, Vol. 266, No. 3. (December 1999), pp. 811-819.
    by S Watanabe, T Muramatsu, H Ao, Y Hirayama, K Takahashi, M Tanokura, Y Kuchino
    posted to lonprotease newtrp protease thermusthermophilus by madhadron on 2007-09-26 16:11:45 as **
  • Comparative genomics and functional roles of the ATP-dependent proteases Lon and Clp during cytosolic protein degradation.
    Res Microbiol, Vol. 155, No. 9. (November 2004), pp. 710-719.
    by D Chandu, D Nandi
    posted to genomics newtrp protease protein by madhadron on 2007-09-26 15:58:01 as **
  • Kinetic characterization of the peptidase activity of Escherichia coli Lon reveals the mechanistic similarities in ATP-dependent hydrolysis of peptide and protein substrates.
    Biochemistry, Vol. 41, No. 30. (30 July 2002), pp. 9418-9425.
    by J Thomas-Wohlever, I Lee
    posted to ecoli newtrp protease by madhadron on 2007-09-26 16:05:55 as **
  • Degradation in vitro of bacteriophage lambda N protein by Lon protease from Escherichia coli.
    J Biol Chem, Vol. 262, No. 6. (25 February 1987), pp. 2696-2703.
    by MR Maurizi
    posted to bacteriophage ecoli newtrp protease by madhadron on 2007-09-26 16:09:07 as **
  • Lon and Clp-like ATP-dependent proteases of Lactococcus lactis.
    Dev Biol Stand, Vol. 85 (1995), pp. 481-486.
    by C Coward, RW Le Page, JM Wells
    posted to lactococcuslactis newtrp protease by madhadron on 2007-09-26 16:11:22 as **
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