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Tag promoters [47 articles]

Recent papers classified by the tag promoters.
  • EDGEdb: a transcription factor-DNA interaction database for the analysis of C. elegans differential gene expression
    BMC Genomics, Vol. 8 (18 January 2007), 21.
    by Inmaculada M Barrasa, Philippe Vaglio, Fabien Cavasino, Laurent Jacotot, Albertha JM Walhout
    posted to cne database developmental interaction promoters protein-dna transcriptome by sujaikumar on 2007-03-11 14:09:58 as read along with 2 people and 1 group tharris SeungjoonOh C. elegans / WormBase
  • Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.
    Nat Genet (4 February 2007)
    by Nathaniel D D Heintzman, Rhona K K Stuart, Gary Hon, Yutao Fu, Christina W W Ching, R David D Hawkins, Leah O O Barrera, Sara Van Calcar, Chunxu Qu, Keith A A Ching, Wei Wang, Zhiping Weng, Roland D D Green, Gregory E E Crawford, Bing Ren
    posted to chip chromatin enhancers promoters transcription by skoch3 on 2008-01-02 23:01:09 as **** along with 7 people and 2 groups kengg djkt mgaldzic olympos epigenetics caseybrown inesdesantiago CHIP Plantandetc
  • The core histone tail domains contribute to sequence-dependent nucleosome positioning.
    J Biol Chem (17 January 2007)
    by Zungyoon Yang, Chunyang Zheng, Jeffrey J J Hayes
    posted to histone initiation nucleosomes positioning promoters tails transcription by skoch3 on 2007-04-29 00:20:54 as ** along with 2 people and 2 groups indigoviolet dpollard EisenLab Koch_Lab
  • Transcription in Mycoplasma pneumoniae.
    Nucleic acids research, Vol. 28, No. 22. (15 November 2000), pp. 4488-4496.
    by J Weiner, R Herrmann, GF Browning
    posted to bioinformatics mycoplasma primer_extension promoters transcription by shana on 2008-06-23 03:50:47 as read along with 1 person Ema
  • Variable lipoprotein genes of Mycoplasma agalactiae are activated in vivo by promoter addition via site-specific DNA inversions.
    Infect Immun, Vol. 71, No. 7. (July 2003), pp. 3821-3830.
    by R Flitman-Tene, S Mudahi-Orenstein, S Levisohn, D Yogev
    posted to mycoplasma primer_extension promoters rt-pcr by shana on 2008-06-23 03:31:42 as ** along with 1 person operon
  • Transcriptional analysis of the conserved ftsZ gene cluster in Mycoplasma genitalium and Mycoplasma pneumoniae.
    Journal of bacteriology, Vol. 187, No. 13. (July 2005), pp. 4542-4551.
    by GA Benders, BC Powell, CA Hutchison
    posted to mycoplasma promoters transcription by shana on 2008-06-23 03:13:57 as ****
  • Characterization and analysis of a stable serotype-associated membrane protein (P30) of Mycoplasma agalactiae.
    Journal of clinical microbiology, Vol. 39, No. 8. (August 2001), pp. 2814-2822.
    by B Fleury, D Bergonier, X Berthelot, Y Schlatter, J Frey, EM Vilei
    posted to immunoblot mycoplasma promoters by shana on 2008-06-23 03:50:32 as ***
  • Trinucleotide GAA repeats dictate pMGA gene expression in Mycoplasma gallisepticum by affecting spacing between flanking regions.
    Journal of bacteriology, Vol. 184, No. 5. (March 2002), pp. 1335-1339.
    by L Liu, VS Panangala, K Dybvig
    posted to promoters regulatory_regions vector by shana on 2008-06-23 03:40:07 as **
  • The hsd loci of Mycoplasma pulmonis: organization, rearrangements and expression of genes.
    Molecular microbiology, Vol. 26, No. 1. (October 1997), pp. 109-120.
    by R Sitaraman, K Dybvig
    posted to gene_expression mycoplasma promoters by shana on 2008-06-24 03:40:23 as *
  • A novel mechanism for control of antigenic variation in the haemagglutinin gene family of mycoplasma synoviae.
    Molecular microbiology, Vol. 35, No. 4. (February 2000), pp. 911-923.
    by AH Noormohammadi, PF Markham, A Kanci, KG Whithear, GF Browning
    posted to mycoplasma primer_extension promoters by shana on 2008-06-23 04:03:40 as ***
  • A protein (M9) associated with monoclonal antibody-mediated agglutination of Mycoplasma gallisepticum is a member of the pMGA family.
    Infection and immunity, Vol. 66, No. 11. (November 1998), pp. 5570-5575.
    by L Liu, DM Payne, VL van Santen, K Dybvig, VS Panangala
    posted to promoters rt-pcr by shana on 2008-06-24 03:39:02 as **
  • Transcriptional analysis of the hmw gene cluster of Mycoplasma pneumoniae.
    Journal of bacteriology, Vol. 181, No. 16. (August 1999), pp. 4978-4985.
    by RH Waldo, PL Popham, CE Romero-Arroyo, EA Mothershed, KK Lee, DC Krause
    posted to footprinting mycoplasma primer_extension promoters transcription by shana on 2008-06-24 03:29:48 as ****
  • Molecular cloning and characterization of a unique 60 kDa/72 kDa antigen gene encoding enzyme I of the phosphoenolpyruvate: sugar phosphotransferase system (PTS) of Mycoplasma hyopneumoniae.
    Journal of biochemistry, Vol. 128, No. 2. (August 2000), pp. 261-269.
    by TL Chung, L Farh, YL Chen, D Shiuan
    posted to mycoplasma primer_extension promoters protein_structure by shana on 2008-06-23 04:12:59 as ***
  • Juxtaposition of an active promoter to vsp genes via site-specific DNA inversions generates antigenic variation in Mycoplasma bovis.
    J Bacteriol, Vol. 183, No. 19. (October 2001), pp. 5698-5708.
    by I Lysnyansky, Y Ron, D Yogev
    posted to mycoplasma primer_extension promoters by shana on 2008-06-23 03:49:36 as *** along with 1 person operon
  • The adherence-associated lipoprotein P100, encoded by an opp operon structure, functions as the oligopeptide-binding domain OppA of a putative oligopeptide transport system in Mycoplasma hominis.
    Journal of bacteriology, Vol. 181, No. 16. (August 1999), pp. 4873-4878.
    by B Henrich, M Hopfe, A Kitzerow, U Hadding
    posted to mycoplasma primer_extension promoters rt-pcr by shana on 2008-06-24 03:33:44 as **
  • Computational identification of promoters and first exons in the human genome.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 412-417.
    by RV Davuluri, I Grosse, MQ Zhang
    posted to cgi cpg genomics promoters by saxonov on 2005-06-27 18:45:24 as ** along with 1 person olympos
  • Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs
    Genome Res. (27 November 2007), gr.6654808.
    by Leah O Barrera, Zirong Li, Andrew D Smith, Karen C Arden, Webster K Cavenee, Michael Q Zhang, Roland D Green, Bing Ren
    posted to classification promoter promoters regulation transcription by sameetmehta on 2007-11-30 07:06:02 as ** along with 2 people gracio inesdesantiago
  • Role Models for Radical Innovations in Times of Open Innovation
    Creativity and Innovation Management, Vol. 16, No. 4. (2007), pp. 408-421.
    by Hans G Gemunden, Soren Salomo, Katharina Holzle
    posted to champions innovation innovatorroles promoters by Rohrbeck on 2007-11-27 10:15:24 as *****
  • Tuning genetic control through promoter engineering.
    Proc Natl Acad Sci U S A (25 August 2005)
    by Hal Alper, Curt Fischer, Elke Nevoigt, Gregory Stephanopoulos
    posted to genecircuits promoters synthetic_biology transcription by rklancer on 2005-08-29 23:30:03 as read along with 1 person JKelly555
  • Comprehensive analysis of the base composition around the transcription start site in Metazoa
    BMC Genomics, Vol. 5, No. 1. (2004)
    by Stein Aerts, Gert Thijs, Michal Dabrowski, Yves Moreau, Bart De Moor
    posted to promoters tss by RaquelSL on 2008-01-28 17:23:49 as read along with 1 person myrtilus
  • Distinct class of putative "non-conserved" promoters in humans: Comparative studies of alternative promoters of human and mouse genes
    Genome Res., Vol. 17, No. 7. (1 July 2007), pp. 1005-1014.
    by Katsuki Tsuritani, Takuma Irie, Riu Yamashita, Yuta Sakakibara, Hiroyuki Wakaguri, Akinori Kanai, Junko Mizushima-Sugano, Sumio Sugano, Kenta Nakai, Yutaka Suzuki
    posted to mammals promoters by nickluscombe on 2007-07-03 12:46:58 as ** along with 6 people and 2 groups djkt cabbagezs toshiaki_katayama kmdaily antonkratz cisevol EBI-regulation cis-regulatory-evolution
  • notes Genome-scale analysis of the uses of the Escherichia coli genome: model-driven analysis of heterogeneous data sets.
    Journal of bacteriology, Vol. 185, No. 21. (November 2003), pp. 6392-6399.
    by TE Allen, MJ Herrgård, M Liu, Y Qiu, JD Glasner, FR Blattner, BØ Palsson
    posted to translation transcription systems-biology ribosomal reviewed promoters nutrient-limitation mrn-degradation metabolism mdb-thesis gene-length gene-expression-degradation gene-expression flux-balance-analysis energy-production ecoli density cost-benefit-analysis amino-acid-usage 2008-1-mdb by michaelbarton on 2008-10-17 14:55:43 as read
  • A code for transcription initiation in mammalian genomes
    Genome Res. (21 November 2007), gr.6831208.
    by Martin C Frith, Eivind Valen, Anders Krogh, Yoshihide Hayashizaki, Piero Carninci, Albin Sandelin
    posted to promoterprediction promoters by maximilianh on 2008-01-04 16:26:06 as ** along with 8 people myrtilus dchughes cabbagezs idonaldson oelemento gjuggler ohara gracio
  • ModuleMiner: improved computational detection of cis-regulatory modules. Different modes of gene regulation in embryonic development and adult tissues?
    Genome Biology, Vol. 9, No. 4. (2008)
    by Peter Van Loo, Stein Aerts, Bernard Thienpont, Bart De Moor, Yves Moreau, Peter Marynen
    posted to combination discovery motif promoters by maximilianh on 2008-04-09 07:41:36 as ** along with 5 people heliopais brant djkt natstreet phoenixzxl
  • Determining promoter location based on DNA structure first-principles calculations.
    Genome Biology, Vol. 8, No. 12. (2007)
    by Ramon J Goni, Alberto Perez, David Torrents, Modesto Orozco
    posted to promoterprediction promoters by maximilianh on 2007-12-19 09:24:37 as ** along with 2 people cjeans nklee
  • Saccharomyces cerevisiae JEN1 promoter activity is inversely related to concentration of repressing sugar.
    Appl Environ Microbiol, Vol. 70, No. 1. (January 2004), pp. 8-17.
    by P Chambers, A Issaka, SP Palecek
    posted to promoters yeast by lingchong on 2005-09-16 14:51:42 as read
  • A DNA structural atlas for Escherichia coli.
    J Mol Biol, Vol. 299, No. 4. (16 June 2000), pp. 907-930.
    by AG Pedersen, LJ Jensen, S Brunak, HH Staerfeldt, DW Ussery
    posted to dna-structure genome-visualization promoters by larsjuhljensen on 2008-03-24 15:17:06 as read
  • Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation.
    Bioinformatics, Vol. 16, No. 4. (April 2000), pp. 326-333.
    by LJ Jensen, S Knudsen
    posted to expression function promoters by larsjuhljensen on 2008-03-24 15:15:40 as read
  • Genome-wide analysis of mammalian promoter architecture and evolution
    Nature Genetics, Vol. 38, No. 6. (28 April 2006), pp. 626-635.
    by Piero Carninci, Albin Sandelin, Boris Lenhard, Shintaro Katayama, Kazuro Shimokawa, Jasmina Ponjavic, Colin AM Semple, Martin S Taylor, Pär G Engström, Martin C Frith, Alistair RR Forrest, Wynand B Alkema, Sin L Tan, Charles Plessy, Rimantas Kodzius, Timothy Ravasi, Takeya Kasukawa, Shiro Fukuda, Mutsumi Kanamori-Katayama, Yayoi Kitazume, Hideya Kawaji, Chikatoshi Kai, Mari Nakamura, Hideaki Konno, Kenji Nakano, Salim Mottagui-Tabar, Peter Arner, Alessandra Chesi, Stefano Gustincich, Francesca Persichetti, Harukazu Suzuki, Sean M Grimmond, Christine A Wells, Valerio Orlando, Claes Wahlestedt, Edison T Liu, Matthias Harbers, Jun Kawai, Vladimir B Bajic, David A Hume, Yoshihide Hayashizaki
    posted to genomics promoters regulation by jfr on 2006-11-06 14:53:29 as read along with 13 people and 4 groups nklee djkt xwbcn dchughes tabu samal nickluscombe xiaobeizhao cisevol eviledv gjuggler jasonflannick antonkratz G4ID EBI-regulation Genetics-of-Gambling cis-regulatory-evolution
  • DNA motifs in human and mouse proximal promoters predict tissue-specific expression.
    Proc Natl Acad Sci U S A (10 April 2006)
    by Andrew D D Smith, Pavel Sumazin, Zhenyu Xuan, Michael Q Q Zhang
    posted to bioinformatics promoters regulation by jfr on 2006-11-06 15:56:20 as ** along with 2 people postrational caseybrown
  • Microarray data analysis and mining approaches
    Brief Funct Genomic Proteomic (22 January 2008), elm034.
    by Francesca Cordero, Marco Botta, Raffaele A Calogero
    posted to microarray_analysis promoters review by jfr on 2008-04-22 08:23:33 as read along with 5 people akastrin gowtham guhjy neveaire fishtank
  • Systematic discovery of regulatory motifs in human promoters and 3[prime] UTRs by comparison of several mammals
    Nature, Vol. aop, No. current. (27 February 2005)
    by Xiaohui Xie, Jun Lu, EJ Kulbokas, Todd R Golub, Vamsi Mootha, Kerstin Lindblad-Toh, Eric S Lander, Manolis Kellis
    posted to regulation promoters genomics by jfr on 2007-01-12 15:38:18 as ** along with 23 people and 4 groups kieran101 snuppepuppan BioGeek briann jtextori tmmurali okarsligil balajis lyongu eckart_bindewald mtagaya adepace fisherp nickluscombe panetebrother smiddha franklin oscarluoinau heliopais ale emptyhb maralena mariakmejia Bioinformatics EisenLab microRNA EBI-regulation
  • A high-resolution map of active promoters in the human genome
    Nature (29 June 2005)
    by Tae H Kim, Leah O Barrera, Ming Zheng, Chunxu Qu, Michael A Singer, Todd A Richmond, Yingnian Wu, Roland D Green, Bing Ren
    posted to promoters genomics by jfr on 2007-01-11 13:50:10 as * along with 6 people and 1 group imouthesmp okarsligil tuck balicea sebastien_vigneau olympos Bioinformatics
  • Models for prediction and recognition of eukaryotic promoters.
    Mamm Genome, Vol. 10, No. 2. (February 1999), pp. 168-175.
    by T Werner
    posted to promoters review by jfr on 2007-02-14 12:00:08 as read
  • The functional consequences of alternative promoter use in mammalian genomes.
    Trends in Genetics, Vol. 24, No. 4. (April 2008), pp. 167-177.
    by RV Davuluri, Y Suzuki, S Sugano, C Plass, TH Huang
    posted to promoters by heliopais on 2008-11-06 16:10:20 as ** along with 1 person antonkratz
  • Scouts, promoters, and connectors: The roles of ratings in nearest-neighbor collaborative filtering
    ACM Trans. Web, Vol. 1, No. 2. (August 2007)
    by Bharath K Mohan, Benjamin J Keller, Naren Ramakrishnan
    posted to scouts roles recommender_systems recommendation promoters connectors collaborative_filtering by birukou to the group pattern_repositories on 2007-08-25 23:09:41 as ** along with 1 person and 1 group lbjay social_navigation
  • Regulation of breast cancer-associated aromatase promoters.
    Cancer letters (7 July 2008)
    by Dong Chen, Scott Reierstad, Meiling Lu, Zhihong Lin, Hiroshi Ishikawa, Serdar E E Bulun
    posted to aromatase promoters regulation review by FW_Gibb on 2008-08-18 14:29:14 as **
  • Characterisation of aromatase expression in the human adipocyte cell line SGBS.
    Breast Cancer Res Treat (5 January 2008)
    by Kerry J McInnes, Kristy A Brown, Kevin C Knower, Ashwini L Chand, Colin D Clyne, Evan R Simpson
    posted to adipocytes aromatase expression human promoters by FW_Gibb on 2008-01-14 11:34:58 as **
  • Tissue-specific and hormonally controlled alternative promoters regulate aromatase cytochrome P450 gene expression in human adipose tissue
    J. Biol. Chem., Vol. 268, No. 26. (15 September 1993), pp. 19463-19470.
    by Ms Mahendroo, Cr Mendelson, Er Simpson
    posted to adipose aromatase cyp19 gene human promoters regulation by FW_Gibb on 2007-05-23 14:02:44 as **
  • Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds.
    Gene, Vol. 156, No. 1. (14 April 1995), pp. 119-122.
    by D Mumberg, R Müller, M Funk
    posted to methods promoters yeast by Dualsystems on 2006-11-27 10:51:16 as ** along with 2 people gruberjd raiyar
  • Vector systems for heterologous expression of proteins in Saccharomyces cerevisiae.
    Methods Enzymol, Vol. 350 (2002), pp. 248-257.
    by M Funk, R Niedenthal, D Mumberg, K Brinkmann, V Rönicke, T Henkel
    posted to methods promoters yeast by Dualsystems on 2006-11-27 10:51:07 as **
  • Physiological characterization of the yeast metallothionein (CUP1) promoter, and consequences of overexpressing its transcriptional activator, ACE1.
    Yeast, Vol. 10, No. 3. (March 1994), pp. 283-296.
    by T Hottiger, P Fürst, G Pohlig, J Heim
    posted to cup1 method promoters yeast by Dualsystems on 2006-11-27 11:59:07 as ** along with 1 person MarcJungbluth
  • Use of conditional promoters for expression of heterologous proteins in Saccharomyces cerevisiae.
    Methods Enzymol, Vol. 283 (1997), pp. 313-322.
    by V Rönicke, W Graulich, D Mumberg, R Müller, M Funk
    posted to methods promoters yeast by Dualsystems on 2006-11-27 10:50:58 as **
  • Regulation of the yeast metallothionein gene.
    Gene, Vol. 48, No. 1. (1986), pp. 13-22.
    by JA Gorman, PE Clark, MC Lee, C Debouck, M Rosenberg
    posted to cup1 method promoters yeast by Dualsystems on 2006-11-27 11:00:32 as **
  • 2-micron vectors containing the Saccharomyces cerevisiae metallothionein gene as a selectable marker: excellent stability in complex media, and high-level expression of a recombinant protein from a CUP1-promoter-controlled expression cassette in cis.
    Yeast, Vol. 11, No. 1. (January 1995), pp. 1-14.
    by T Hottiger, J Kuhla, G Pohlig, P Fürst, A Spielmann, M Garn, S Haemmerli, J Heim
    posted to cup1 method promoters yeast by Dualsystems on 2006-11-27 11:58:29 as **
  • Regulatable promoters of Saccharomyces cerevisiae: comparison of transcriptional activity and their use for heterologous expression.
    Nucleic Acids Res, Vol. 22, No. 25. (25 December 1994), pp. 5767-5768.
    by D Mumberg, R Müller, M Funk
    posted to methods promoters yeast by Dualsystems on 2006-11-27 10:51:26 as **
  • Alternative Promoters Influence Alternative Splicing at the Genomic Level
    PLoS ONE, Vol. 3, No. 6. (18 June 2008), e2377.
    by Dedong Xin, Landian Hu, Xiangyin Kong
    posted to genetics promoters splicing by cabbagesofdoom on 2008-06-19 09:12:51 as ** along with 2 people raistrick antonkratz
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