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Tag promoter [371 articles]

Recent papers classified by the tag promoter.
  • Mammalian RNA polymerase II core promoters: insights from genome-wide studies
    Nature Reviews Genetics, Vol. 8, No. 6. (08 May 2007), pp. 424-436.
    by Albin Sandelin, Piero Carninci, Boris Lenhard, Jasmina Ponjavic, Yoshihide Hayashizaki, David A Hume
    posted to genome-wide promoter rna by zwang on 2007-06-14 05:24:21 as ** along with 8 people and 3 groups Lauren_Jones agustinarce dchughes xiaobeizhao cabbagezs cisevol GeeSharpMinor idonaldson G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
    posted to expression gene promoter synthetic by zwang on 2007-11-15 01:09:19 as * along with 14 people and 2 groups Retchless tmmurali austin dpollard balicea kengg dbikard margaritis lusk cjeans discreteonyxorb cabbagezs Ema tresch EisenLab SynBioSys
  • On the relation between promoter divergence and gene expression evolution
    Mol Syst Biol, Vol. 4 (15 January 2008)
    by Itay Tirosh, Adina Weinberger, Dana Bezalel, Mark Kaganovich, Naama Barkai
    posted to divergence evolution expression gene promoter by zwang on 2008-01-15 16:40:20 as ** along with 9 people and 2 groups emptyhb balicea kengg biomcgary cisevol caseybrown renatomilani mclarenv Jporci cis-regulatory-evolution BergmanLab
  • High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons.
    Nat Biotechnol (1 April 2007)
    by Patrick T T McGrath, Honglak Lee, Li Zhang, Antonio A A Iniesta, Alison K K Hottes, Meng How H Tan, Nathan J J Hillson, Ping Hu, Lucy Shapiro, Harley H H McAdams
    posted to motif promoter transcription by zwang on 2007-05-10 17:03:41 as ** along with 1 person aswin
  • Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG island promoters.
    PLoS Genet, Vol. 3, No. 10. (26 October 2007), pp. 2023-2036.
    by L Shen, Y Kondo, Y Guo, J Zhang, L Zhang, S Ahmed, J Shu, X Chen, RA Waterland, JP Issa
    posted to dna genome-wide methylation promoter by zwang on 2007-11-20 08:55:18 as ** along with 1 person sebastien_vigneau
  • Genome-wide analyses reveal properties of redundant and specific promoter occupancy within the ETS gene family
    Genes Dev., Vol. 21, No. 15. (1 August 2007), pp. 1882-1894.
    by Peter C Hollenhorst, Atul A Shah, Christopher Hopkins, Barbara J Graves
    posted to genefamily genome-wide motif promoter regulation by zwang on 2007-08-09 02:28:24 as * along with 2 people sbranco ale
  • Promoter polymorphism (-786t>C) in the endothelial nitric oxide synthase gene is associated with risk of sporadic breast cancer in non-Hispanic white women age younger than 55 years.
    Cancer, Vol. 107, No. 9. (1 November 2006), pp. 2245-2253.
    by J Lu, Q Wei, ML Bondy, TK Yu, D Li, A Brewster, S Shete, A Sahin, F Meric-Bernstam, LE Wang
    posted to web-study promoter polymorphisms nitric-oxide cancer breast by Zephyrus on 2008-08-04 10:44:39 as ** along with 1 group Breast cancer
  • Rapidly evolving human promoter regions
    Nat Genet, Vol. 40, No. 11. (November 2008), pp. 1262-1263.
    by Martin S Taylor, Tim Massingham, Yoshihide Hayashizaki, Piero Carninci, Nick Goldman, Colin A Semple
    posted to regions read promoter evolution by Zephyrus on 2008-11-06 21:56:44 as ** along with 3 people and 2 groups cisevol caseybrown djkt BergmanLab R.E.A.D
  • MTAP: The Motif Tool Assessment Platform
    BMC Bioinformatics, Vol. 9, No. Suppl 9. (2008)
    by Daniel Quest, Kathryn Dempsey, Mohammad Shafiullah, Dhundy Bastola, Hesham Ali
    posted to software promoter by YuvalTabach on 2008-10-23 14:40:21 as ** along with 2 people Stew dquest
  • The promoters of human cell cycle genes integrate signals from two tumor suppressive pathways during cellular transformation
    Molecular Systems Biology, Vol. 1, No. 1. (18 October 2005), pp. msb4100030-E1-msb4100030-E15.
    by Yuval Tabach, Michael Milyavsky, Igor Shats, Ran Brosh, Or Zuk, Assif Yitzhaky, Roberto Mantovani, Eytan Domany, Varda Rotter, Yitzhak Pilpel
    posted to promoter p53 my motifs location by YuvalTabach on 2008-09-04 16:07:57 as **** along with 3 people rklancer jfr tuck
  • Wide-scale analysis of human functional transcription factor binding reveals a strong bias towards the transcription start site.
    PLoS ONE, Vol. 2, No. 8. (2007)
    by Y Tabach, R Brosh, Y Buganim, A Reiner, O Zuk, A Yitzhaky, M Koudritsky, V Rotter, E Domany
    posted to location motifs my promoter by YuvalTabach on 2008-08-03 09:09:50 as read along with 1 person nklee
  • Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes.
    Genome Res (12 December 2005)
    by Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-Ichi I Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano
    posted to est promoter by yoanjacquemin on 2008-05-19 08:28:16 as read along with 7 people ujh textoris troels_marstrand olympos nosada17 antonkratz bethsabrina
  • The long terminal repeats of the HERV-H human endogenous retrovirus contain binding sites for transcriptional regulation by the Myb protein
    J Gen Virol, Vol. 80, No. 4. (1 April 1999), pp. 841-845.
    by N de Parseval, H Alkabbani, T Heidmann
    posted to herv promoter te by yoanjacquemin on 2008-01-28 15:50:00 as **
  • Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-I genes in humans.
    J Biol Chem, Vol. 276, No. 3. (19 January 2001), pp. 1896-1903.
    by P Medstrand, JR Landry, DL Mager
    posted to 324 cited est herv promoter te by yoanjacquemin on 2008-02-12 16:46:01 as ** along with 2 people and 1 group ushishir cisevol cis-regulatory-evolution
  • Hd3a Protein Is a Mobile Flowering Signal in Rice.
    Science (19 April 2007)
    by Shojiro Tamaki, Shoichi Matsuo, Hann Ling L Wong, Shuji Yokoi, Ko Shimamoto
    posted to arabidopsis flowering promoter rice by xwbcn on 2007-04-22 08:33:26 as **
  • Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data
    BMC Bioinformatics, Vol. 7 (04 July 2006), 330.
    by Seon-Young Kim, Yongsung Kim
    posted to tf promoter microarray mammal human_genome genome expression chip by xwbcn on 2007-01-13 04:28:37 as ** along with 3 people heliopais jfr Ao_Li2007
  • Identification of plant promoter constituents by analysis of local distribution of short sequences
    BMC Genomics, Vol. 8 (08 March 2007), 67.
    by Yoshiharu Y Yamamoto, Hiroyuki Ichida, Minami Matsui, Junichi Obokata, Teshuya Sakurai, Masakazu Satou, Motoaki Seki, Kazuo Shinozaki, Tomoko Abe
    posted to arabidopsis comparative_study g genome motif promoter rice by xwbcn on 2007-05-02 08:08:59 as ** along with 5 people and 1 group kengg saru byy Jporci natstreet Plantandetc
  • Genome-wide analysis of mammalian promoter architecture and evolution
    Nature Genetics, Vol. 38, No. 6. (28 April 2006), pp. 626-635.
    by Piero Carninci, Albin Sandelin, Boris Lenhard, Shintaro Katayama, Kazuro Shimokawa, Jasmina Ponjavic, Colin AM Semple, Martin S Taylor, Pär G Engström, Martin C Frith, Alistair RR Forrest, Wynand B Alkema, Sin L Tan, Charles Plessy, Rimantas Kodzius, Timothy Ravasi, Takeya Kasukawa, Shiro Fukuda, Mutsumi Kanamori-Katayama, Yayoi Kitazume, Hideya Kawaji, Chikatoshi Kai, Mari Nakamura, Hideaki Konno, Kenji Nakano, Salim Mottagui-Tabar, Peter Arner, Alessandra Chesi, Stefano Gustincich, Francesca Persichetti, Harukazu Suzuki, Sean M Grimmond, Christine A Wells, Valerio Orlando, Claes Wahlestedt, Edison T Liu, Matthias Harbers, Jun Kawai, Vladimir B Bajic, David A Hume, Yoshihide Hayashizaki
    posted to genome human motif promoter by xwbcn on 2006-07-16 13:02:13 as ** along with 13 people and 4 groups nklee djkt jfr dchughes tabu samal nickluscombe xiaobeizhao cisevol eviledv gjuggler jasonflannick antonkratz G4ID EBI-regulation Genetics-of-Gambling cis-regulatory-evolution
  • Promoter features related to tissue specificity as measured by Shannon entropy.
    Genome Biol, Vol. 6, No. 4. (2005)
    by J Schug, WP Schuller, C Kappen, JM Salbaum, M Bucan, CJ Stoeckert
    posted to expression human promoter shannon_entropy by xwbcn on 2007-06-07 04:04:55 as ** along with 1 person jschug
  • Large-scale Cis-element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea.
    Plant Physiol (6 October 2006)
    by Georg Haberer, Michael T T Mader, Peter Kosarev, Manuel Spannagl, Li Yang, Klaus Fx F Mayer
    posted to arabidopsis chip comparative_study genome microarray motif promoter by xwbcn on 2006-10-13 02:53:11 as ** along with 4 people and 1 group dpollard kengg nklee xili03 EisenLab
  • Role of the p53-homologue p73 in E2F1-induced apoptosis
    Nat Genet, Vol. 26, No. 4. (December 2000), pp. 464-469.
    by Thorsten Stiewe, Brigitte M Putzer
    posted to promoter p53 by xingxu on 2008-10-02 15:25:55 as **
  • Investigations of the effect of DNA size in transient transfection assay using dual luciferase system.
    Analytical biochemistry, Vol. 346, No. 2. (15 November 2005), pp. 289-294.
    by W Yin, P Xiang, Q Li
    posted to technical promoter luciferase by xingxu on 2008-10-02 15:29:09 as **
  • Computational approaches to identify promoters and cis-regulatory elements in plant genomes.
    Plant Physiol, Vol. 132, No. 3. (July 2003), pp. 1162-1176.
    by S Rombauts, K Florquin, M Lescot, K Marchal, P Rouzé, Y van de Peer
    posted to cis-element promoter by xili03 on 2008-01-10 02:36:06 as read along with 2 people balicea saru
  • Pol II promoter prediction using characteristic 4-mer motifs: a machine learning approach
    BMC Bioinformatics, Vol. 9 (04 October 2008), 414.
    by Firoz Anwar, Syed M Baker, Taskeed Jabid, Md, Mohammad Shoyaib, Haseena Khan, Ray Walshe
    posted to promoter by xili03 on 2008-10-08 02:07:21 as **
  • Transcription regulation and animal diversity.
    Nature, Vol. 424, No. 6945. (10 July 2003), pp. 147-151.
    by M Levine, R Tjian
    posted to animal diversity enhancer factor gene polymerase promoter regulation rna rnapolii transcription by xico on 2007-05-27 01:35:17 as **** along with 7 people and 2 groups Lauren_Jones nickluscombe djkt lusk Jporci heliopais brant WetBiology EBI-regulation
  • The multicoloured world of promoter recognition complexes.
    EMBO J, Vol. 23, No. 1. (14 January 2004), pp. 2-8.
    by F Müller, L Tora
    posted to complex polymerase promoter recognition rna transcription by xico on 2006-01-09 15:33:51 as *** along with 1 person and 1 group myrtilus WetBiology
  • SCPD: a promoter database of the yeast Saccharomyces cerevisiae.
    Bioinformatics, Vol. 15, No. 7-8. (g 1999), pp. 607-611.
    by J Zhu, MQ Zhang
    posted to promoter by xiaobeizhao on 2006-10-09 15:33:09 as ** along with 4 people chad_davis lusk nklee njcitulike
  • Analysis of combinatorial cis-regulation in synthetic and genomic promoters
    Nature (23 November 2008)
    by Jason Gertz, Eric D Siggia, Barak A Cohen
    posted to tfbs promoter by xianjun on 2008-11-26 20:52:34 as ** along with 1 person isimpson
  • Genome-wide promoter extraction and analysis in human, mouse, and rat.
    Genome Biol, Vol. 6, No. 8. (2005)
    by Z Xuan, F Zhao, J Wang, G Chen, MQ Zhang
    posted to human mouse promoter rat by uz_labu_laimi on 2007-04-11 18:39:57 as ** along with 2 people nur77 caseybrown
  • Spermatid-specific promoter of the SP-10 gene functions as an insulator in somatic cells
    Developmental Biology, Vol. 262, No. 1. (1 October 2003), pp. 173-182.
    by Prabhakara P Reddi, Amy N Shore, Joshua A Shapiro, Alice Anderson, Mark H Stoler, Kshitish K Acharya
    posted to cis_element insulator promoter sp-10 spermatid by uz_labu_laimi on 2007-04-25 16:25:17 as ***
  • The chicken lysozyme 5' matrix attachment region increases transcription from a heterologous promoter in heterologous cells and dampens position effects on the expression of transfected genes.
    Mol Cell Biol, Vol. 10, No. 5. (May 1990), pp. 2302-2307.
    by L Phi-Van, JP von Kries, W Ostertag, WH Strätling
    posted to chicken lysozyme promoter smar transcription by uz_labu_laimi on 2007-03-29 18:27:13 as **
  • cAMP-response element modulator-tau activates a distinct promoter element for the expression of the phospholipid hydroperoxide/sperm nucleus glutathione peroxidase gene.
    Biochem J, Vol. 383, No. Pt 1. (1 October 2004), pp. 179-185.
    by F Tramer, A Vetere, M Martinelli, F Paroni, E Marsich, C Boitani, G Sandri, E Panfili
    posted to crem gene_expression gpx4 phgpx promoter spermatid by uz_labu_laimi on 2007-03-07 15:35:42 as **
  • MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e216.
    by Saurabh Sinha, Xin He
    posted to drosophila pair-wise-alignment promoter by uwe on 2007-11-30 22:42:29 as *** along with 7 people and 2 groups ana dpollard cjeans zwang maximilianh hpaces Ema EisenLab cis-regulatory-evolution
  • Properties and exploitation of oleosins
    Biotechnology Advances, Vol. 25, No. 2. (March 2007), pp. 203-206.
    by F Capuano, F Beaudoin, J Napier, P Shewry
    posted to seed promoter by udivi on 2008-11-24 22:59:54 as **
  • A high-resolution map of active promoters in the human genome
    Nature (29 June 2005)
    by Tae H Kim, Leah O Barrera, Ming Zheng, Chunxu Qu, Michael A Singer, Todd A Richmond, Yingnian Wu, Roland D Green, Bing Ren
    posted to promoter by tuck on 2005-11-30 02:42:38 as ** along with 6 people and 1 group imouthesmp okarsligil jfr balicea sebastien_vigneau olympos Bioinformatics
  • Identification of Promoter Regions in the Human Genome by Using a Retroviral Plasmid Library-Based Functional Reporter Gene Assay
    Genome Res., Vol. 13, No. 7. (1 July 2003), pp. 1765-1774.
    by Shirin Khambata-Ford, Yueyi Liu, Christopher Gleason, Mark Dickson, Russ B Altman, Serafim Batzoglou, Richard M Myers
    posted to genome promoter transcription by tuck on 2006-01-02 01:02:36 as **
  • Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets
    Carcinogenesis, Vol. 27, No. 12. (December 2006), pp. 2409-2423.
    by Ordway, , Bedell, , Citek, , Nunberg, , Garrido, , Kendall, , Stevens, , Cao, , Doerge, , Korshunova, , Holemon, , Mcpherson, , Lakey, , Leon, , Martienssen, , Jeddeloh,
    posted to cpg_island methylation promoter by tuck on 2006-12-28 11:47:22 as **
  • Distinct class of putative "non-conserved" promoters in humans: Comparative studies of alternative promoters of human and mouse genes
    Genome Res., Vol. 17, No. 7. (1 July 2007), pp. 1005-1014.
    by Katsuki Tsuritani, Takuma Irie, Riu Yamashita, Yuta Sakakibara, Hiroyuki Wakaguri, Akinori Kanai, Junko Mizushima-Sugano, Sumio Sugano, Kenta Nakai, Yutaka Suzuki
    posted to promoter by toshiaki_katayama on 2007-07-04 08:56:37 as ** along with 6 people and 2 groups nickluscombe djkt cabbagezs kmdaily antonkratz cisevol EBI-regulation cis-regulatory-evolution
  • Uniform vascular-endothelial-cell-specific gene expression in both embryonic and adult transgenic mice
    Proceedings of the National Academy of Sciences, Vol. 94, No. 7. (1 April 1997), pp. 3058-3063.
    by Thorsten M Schlaeger, Sona Bartunkova, Joel A Lawitts, Gunnar Teichmann, Werner Risau, Urban Deutsch, Thomas N Sato
    posted to promoter receptor tie2 by tkamimot on 2008-06-20 08:45:47 as **
  • Fast Evolution of Core Promoters in Primate Genomes
    Mol Biol Evol, Vol. 25, No. 6. (1 June 2008), pp. 1239-1244.
    by Han Liang, Yeong-Shin Lin, Wen-Hsiung Li
    posted to evolution genome primate promoter by Stew on 2008-05-13 17:24:34 as ** along with 2 people and 1 group cisevol aprasad cis-regulatory-evolution
  • NELF and GAGA factor are linked to promoter-proximal pausing at many genes in Drosophila.
    Molecular and cellular biology, Vol. 28, No. 10. (May 2008), pp. 3290-3300.
    by C Lee, X Li, A Hechmer, M Eisen, MD Biggin, BJ Venters, C Jiang, J Li, BF Pugh, DS Gilmour
    posted to drosophila gaga nelf pausing promoter by Stew on 2008-05-16 08:55:57 as **
  • Specific regulation of rat glial cell line-derived neurotrophic factor gene expression by riluzole in C6 glioma cells
    Journal of Neurochemistry, Vol. 97, No. 1. (April 2006), pp. 128-139.
    by Anne-Sophie Caumont, Jean-Noel Octave, Emmanuel Hermans
    posted to c6 gdnf promoter by stevezhang on 2007-08-03 22:25:19 as ** along with 1 group SGMO_ZFP
  • Promoter analysis and characteristics of the 5'-untranslated region of the mouse glial cell line-derived neurotrophic factor gene.
    Brain Res Mol Brain Res, Vol. 85, No. 1-2. (28 December 2000), pp. 91-102.
    by M Tanaka, S Ito, N Matsushita, N Mori, K Kiuchi
    posted to gdnf promoter by stevezhang on 2006-08-30 00:54:41 as ** along with 1 group SGMO_ZFP
  • Novel alternative promoters of mouse glial cell line-derived neurotrophic factor gene.
    Biochim Biophys Acta, Vol. 1494, No. 1-2. (15 November 2000), pp. 63-74.
    by M Tanaka, S Ito, K Kiuchi
    posted to gdnf promoter by stevezhang on 2006-08-26 02:19:39 as ** along with 1 group SGMO_ZFP
  • notes Strong bias in the location of functional promoter polymorphisms.
    Hum Mutat, Vol. 26, No. 3. (September 2005), pp. 214-223.
    by PR Buckland, B Hoogendoorn, SL Coleman, CA Guy, SK Smith, MC O'Donovan
    posted to pedf polymorphism promoter by stevezhang on 2006-03-24 08:46:42 as **** along with 1 group SGMO_ZFP
  • Nerve growth factor activates brain-derived neurotrophic factor promoter IV via extracellular signal-regulated protein kinase 1/2 in PC12 cells.
    Molecules and cells, Vol. 21, No. 2. (30 April 2006), pp. 237-243.
    by SY Park, JY Lee, JY Choi, MJ Park, DS Kim
    posted to bdnf promoter by stevezhang on 2008-04-11 18:31:50 as **
  • Cloning and structural organization of the gene encoding the mouse glial cell line-derived neurotrophic factor, GDNF.
    Gene, Vol. 203, No. 2. (12 December 1997), pp. 149-157.
    by N Matsushita, Y Fujita, M Tanaka, T Nagatsu, K Kiuchi
    posted to gdnf promoter by stevezhang on 2007-02-16 02:39:39 as *** along with 1 group SGMO_ZFP
  • Analysis of the human GDNF gene reveals an inducible promoter, three exons, a triplet repeat within the 3'-UTR and alternative splice products.
    Hum Mol Genet, Vol. 7, No. 12. (November 1998), pp. 1873-1886.
    by L Grimm, E Holinski-Feder, J Teodoridis, B Scheffer, D Schindelhauer, T Meitinger, M Ueffing
    posted to gdnf promoter by stevezhang on 2006-08-26 02:16:34 as ** along with 1 group SGMO_ZFP
  • Characterization of a promoter for the human glial cell line-derived neurotrophic factor gene.
    Brain Res Mol Brain Res, Vol. 69, No. 2. (8 June 1999), pp. 209-222.
    by PA Baecker, WH Lee, AN Verity, RM Eglen, RM Johnson
    posted to gdnf promoter by stevezhang on 2006-08-26 02:17:16 as ** along with 1 group SGMO_ZFP
  • Driving GDNF expression: The green and the red traffic lights.
    Progress in neurobiology (7 September 2008)
    by Ana Saavedra, Graça Baltazar, Emília P P Duarte
    posted to tra promoter gdnf by stevezhang on 2008-11-07 11:30:50 as **
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