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Tag prokaryotes [63 articles]

Recent papers classified by the tag prokaryotes.
  • The Native Bacterioplankton Community in the Central Baltic Sea Is Influenced by Freshwater Bacterial Species
    Appl. Environ. Microbiol., Vol. 74, No. 2. (15 January 2008), pp. 503-515.
  • Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments
    Science, Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130.
    by C von Mering, P Hugenholtz, J Raes, SG Tringe, T Doerks, LJ Jensen, N Ward, P Bork
  • The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
    PLoS Biology, Vol. 5, No. 3. (1 March 2007), e77.
    by Douglas B Rusch, Aaron L Halpern, Granger Sutton, Karla B Heidelberg, Shannon Williamson, Shibu Yooseph, Dongying Wu, Jonathan A Eisen, Jeff M Hoffman, Karin Remington, Karen Beeson, Bao Tran, Hamilton Smith, Holly Baden-Tillson, Clare Stewart, Joyce Thorpe, Jason Freeman, Cynthia Andrews-Pfannkoch, Joseph E Venter, Kelvin Li, Saul Kravitz, John F Heidelberg, Terry Utterback, Yu-Hui Rogers, Luisa I Falcón, Valeria Souza, Germán Bonilla-Rosso, Luis E Eguiarte, David M Karl, Shubha Sathyendranath, Trevor Platt, Eldredge Bermingham, Victor Gallardo, Giselle Tamayo-Castillo, Michael R Ferrari, Robert L Strausberg, Kenneth Nealson, Robert Friedman, Marvin Frazier, Craig J Venter
  • Predicting prokaryotic ecological niches using genome sequence analysis.
    PLoS ONE, Vol. 2, No. 1. (2007)
    by G Suen, BS Goldman, RD Welch
  • Fine-scale phylogenetic architecture of a complex bacterial community.
    Nature, Vol. 430, No. 6999. (29 July 2004), pp. 551-554.
    by SG Acinas, V Klepac-Ceraj, DE Hunt, C Pharino, I Ceraj, DL Distel, MF Polz
  • A comparative study of the cytometric characteristics of High and Low nucleic-acid bacterioplankton cells from different aquatic ecosystems
    Environmental Microbiology, Vol. 9, No. 8. (August 2007), pp. 2050-2066.
  • Genomic insights that advance the species definition for prokaryotes.
    Proc Natl Acad Sci U S A, Vol. 102, No. 7. (15 February 2005), pp. 2567-2572.
  • The importance of culturing bacterioplankton in the 'omics' age
    Nature Reviews Microbiology, Vol. 5, No. 10., pp. 820-826.
    by Stephen Giovannoni, Ulrich Stingl
  • Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data
    BMC Evolutionary Biology, Vol. 7 (29 November 2007), 237.
    by Frederic Lemoine, Olivier Lespinet, Bernard Labedan
  • Molecular Signature of Hypersaline Adaptation: Insights from Genome and Proteome Composition of Halophilic Prokaryotes
    Genome Biology, Vol. 9, No. 4. (2008)
    by Sandip Paul, Sumit Bag, Sabyasachi Das, Eric Harvill, Chitra Dutta
  • Serine hydroxymethyltransferase from Escherichia coli: purification and properties.
    Journal of bacteriology, Vol. 163, No. 1. (July 1985), pp. 1-7.
    posted to prokaryotes shmt by Rayn on 2008-08-07 00:06:28 as **
  • Purification and properties of serine hydroxymethyltransferase from Sulfolobus solfataricus
    J. Bacteriol., Vol. 179, No. 23. (1 December 1997), pp. 7456-7461.
    posted to prokaryotes shmt by Rayn on 2008-08-06 23:06:52 as **
  • Overexpression and characterization of dimeric and tetrameric forms of recombinant serine hydroxymethyltransferase from Bacillus stearothermophilus.
    Journal of biosciences, Vol. 27, No. 3. (June 2002), pp. 233-242.
    by VR Jala, V Prakash, NA Rao, HS Savithri
    posted to prokaryotes shmt by Rayn on 2008-08-07 01:37:22 as **
  • Cloning and structural analysis of Mycobacterium leprae serine hydroxymethyltransferase.
    Protein Expr Purif (29 April 2007)
    by Sarita Sharma, Alok Sharma, Hans-Jürgen J Hecht, Vinod Bhakuni
    posted to prokaryotes shmt by Rayn on 2007-06-18 21:32:22 as ***
  • Crystal structure at 2.4 A resolution of E. coli serine hydroxymethyltransferase in complex with glycine substrate and 5-formyl tetrahydrofolate.
    Journal of molecular biology, Vol. 296, No. 1. (11 February 2000), pp. 155-168.
    posted to prokaryotes shmt structure by Rayn on 2008-08-06 23:33:11 as **
  • New techniques for isolation of single prokaryotic cells
    FEMS Microbiology Reviews, Vol. 24, No. 5. (December 2000), pp. 567-572.
    by Jurgen Frohlich, Helmut Konig
    posted to laser_dissection nanomanipulation optical_tweezers prokaryotes by monocyte on 2005-03-30 20:09:46 as **
  • MICROBIOLOGY: Weapons of Microbial Drug Resistance Abound in Soil Flora
    Science, Vol. 311, No. 5759. (20 January 2006), pp. 342-343.
    by Alexander Tomasz
    posted to antibiotic_resistance prokaryotes by lesander on 2008-02-19 19:25:45 as ** along with 1 person dayjm
  • Measuring genome evolution.
    Proc Natl Acad Sci U S A, Vol. 95, No. 11. (26 May 1998), pp. 5849-5856.
    by MA Huynen, P Bork
  • The balance of driving forces during genome evolution in prokaryotes.
    Genome Res, Vol. 13, No. 7. (July 2003), pp. 1589-1594.
    by V Kunin, CA Ouzounis
  • Old approach yields new antibiotic
    Nature Medicine, Vol. 11, No. 10., pp. 1045-1046.
    by John S Blanchard
    posted to antobiotics peroxisome printed prokaryotes by johncumbers on 2007-03-14 23:25:56 as **
  • Dibiphytanyl ether lipids in nonthermophilic crenarchaeotes.
    Appl Environ Microbiol, Vol. 64, No. 3. (March 1998), pp. 1133-1138.
    by EF Delong, LL King, R Massana, H Cittone, A Murray, C Schleper, SG Wakeham
  • Cultivating the uncultured
    PNAS, Vol. 99, No. 24. (26 November 2002), pp. 15681-15686.
    by Karsten Zengler, Gerardo Toledo, Michael Rappe, James Elkins, Eric J Mathur, Jay M Short, Martin Keller
  • Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria.
    Appl Environ Microbiol, Vol. 70, No. 1. (January 2004), pp. 432-440.
    by JC Cho, SJ Giovannoni
  • Think big giant genes in bacteria
    Environmental Microbiology, Vol. 10, No. 3. (March 2008), pp. 768-777.
    posted to genomics prokaryotes by jdelcampo on 2008-05-22 15:57:48 as ** along with 1 person gandrian
  • Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom.
    Appl Environ Microbiol, Vol. 66, No. 10. (October 2000), pp. 4237-4246.
    posted to dmso marine prokaryotes by jdelcampo on 2006-11-09 11:59:15 as ** along with 1 group Microbial-Ecology
  • MICROBIOLOGY: A Fifth Pathway of Carbon Fixation
    Science, Vol. 318, No. 5857. (14 December 2007), pp. 1732-1733.
    by Rudolf K Thauer
  • Roseobacter-like bacteria in red and mediterranean sea aerobic anoxygenic photosynthetic populations.
    Appl Environ Microbiol, Vol. 71, No. 1. (January 2005), pp. 344-353.
    by A Oz, G Sabehi, M Koblízek, R Massana, O Béjà
  • High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates.
    Appl Environ Microbiol, Vol. 68, No. 8. (August 2002), pp. 3878-3885.
    by SA Connon, SJ Giovannoni
  • New light on an important microbe in the ocean
    Proceedings of the National Academy of Sciences, Vol. 105, No. 25. (24 June 2008), pp. 8487-8488.
    by David L Kirchman
    posted to proteorhodopsins prokaryotes microbial-ecology marine by jdelcampo on 2008-10-23 20:38:43 as **
  • Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat.
    Appl Environ Microbiol, Vol. 72, No. 5. (May 2006), pp. 3685-3695.
    by RE Ley, JK Harris, J Wilcox, JR Spear, SR Miller, BM Bebout, JA Maresca, DA Bryant, ML Sogin, NR Pace
  • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.
    J Bacteriol, Vol. 180, No. 18. (September 1998), pp. 4765-4774.
    by P Hugenholtz, BM Goebel, NR Pace
  • Global patterns of diversity and community structure in marine bacterioplankton
    Molecular Ecology, Vol. 16, No. 4. (February 2007), pp. 867-880.
  • Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica.
    Appl Environ Microbiol, Vol. 64, No. 7. (July 1998), pp. 2585-2595.
    by AE Murray, CM Preston, R Massana, LT Taylor, A Blakis, K Wu, EF Delong
  • Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel.
    Appl Environ Microbiol, Vol. 63, No. 1. (January 1997), pp. 50-56.
    by R Massana, AE Murray, CM Preston, EF Delong
  • Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)
    Proceedings of the National Academy of Sciences (13 June 2008), 0712027105.
    by Jose M González, Beatriz Fernandez-Gomez, Antoni Fernandez-Guerra, Laura Gómez-Consarnau, Olga Sanchez, Montserrat Coll-Lladó, Javier Del Campo, Lorena Escudero, Raquel Rodríguez-Martínez, Laura Alonso-Saez, Mikel Latasa, Ian Paulsen, Olga Nedashkovskaya, Itziar Lekunberri, Jarone Pinhassi, Carlos Pedrós-Alió
  • Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells.
    J. Bacteriol., Vol. 170, No. 2. (1 February 1988), pp. 720-726.
    by SJ Giovannoni, EF Delong, GJ Olsen, NR Pace
    posted to fish prokaryotes by jdelcampo on 2008-05-22 12:39:18 as ***
  • Light stimulates growth of proteorhodopsin-containing marine Flavobacteria
    Nature, Vol. 445, No. 7124., pp. 210-213.
    by Laura Gómez-Consarnau, José M González, Montserrat Coll-Lladó, Pontus Gourdon, Torbjörn Pascher, Richard Neutze, Carlos Pedrós-Alió, Jarone Pinhassi
  • GenDB--an open source genome annotation system for prokaryote genomes.
    Nucleic Acids Res, Vol. 31, No. 8. (15 April 2003), pp. 2187-2195.
  • Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria.
    Appl Environ Microbiol, Vol. 71, No. 2. (February 2005), pp. 826-834.
    by KE Davis, SJ Joseph, PH Janssen
  • What are bacterial species?
    Annu Rev Microbiol, Vol. 56 (2002), pp. 457-487.
    by FM Cohan
  • Bacteria and island biogeography.
    Science, Vol. 309, No. 5743. (23 September 2005)
    by T Fenchel, BJ Finlay
  • Towards a prokaryotic genomic taxonomy.
    FEMS Microbiol Rev, Vol. 29, No. 2. (April 2005), pp. 147-167.
  • Cultivation of the ubiquitous SAR11 marine bacterioplankton clade.
    Nature, Vol. 418, No. 6898. (8 August 2002), pp. 630-633.
    by MS Rappé, SA Connon, KL Vergin, SJ Giovannoni
  • Proteorhodopsin phototrophy in the ocean.
    Nature, Vol. 411, No. 6839. (14 June 2001), pp. 786-789.
    by O Béjà, EN Spudich, JL Spudich, M Leclerc, EF Delong
  • New Strategies for Cultivation and Detection of Previously Uncultured Microbes
    Appl. Environ. Microbiol., Vol. 70, No. 8. (1 August 2004), pp. 4748-4755.
    by Bradley S Stevenson, Stephanie A Eichorst, John T Wertz, Thomas M Schmidt, John A Breznak
  • Predation on prokaryotes in the water column and its ecological implications.
    Nat Rev Microbiol (10 June 2005)
    by Jakob Pernthaler
  • Diversification and spectral tuning in marine proteorhodopsins.
    EMBO J, Vol. 22, No. 8. (15 April 2003), pp. 1725-1731.
    by D Man, W Wang, G Sabehi, L Aravind, AF Post, R Massana, EN Spudich, JL Spudich, O Béjà
  • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes.
    PLoS Comput Biol, Vol. 1, No. 6. (November 2005)
    by DH Haft, J Selengut, EF Mongodin, KE Nelson
    posted to crispr genomics prokaryotes by blobbybirdman to the group Myxo group on 2008-04-29 16:45:13 as **** along with 1 person saru
  • Micros for microbes: non-coding regulatory RNAs in bacteria.
    Trends Genet, Vol. 21, No. 7. (July 2005), pp. 399-404.
  • Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes
    BMC Bioinformatics, Vol. 8 (08 February 2007), 47.
    by Yuko Makita, Michiel JL de Hoon, Antoine Danchin
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