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Tag proj_disocons [77 articles]

Recent papers classified by the tag proj_disocons.
  • Prediction of disordered regions in proteins based on the meta approach
    Bioinformatics (20 April 2008), btn195.
    by Takashi Ishida, Kengo Kinoshita
    posted to algorithm classification disorder ensemble proj_disocons structure by chad_davis to the group structural_bioinformatics on 2008-04-28 09:47:26 as ***** along with 1 person niallhaslam
  • notes Prediction of disordered regions in proteins from position specific score matrices.
    Proteins, Vol. 53 Suppl 6 (2003), pp. 573-578.
    by DT Jones, JJ Ward
    posted to disorder proj_disocons by chad_davis on 2006-07-21 18:36:22 as read
  • DisProt: the Database of Disordered Proteins.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by M Sickmeier, JA Hamilton, T Legall, V Vacic, MS Cortese, A Tantos, B Szabo, P Tompa, J Chen, VN Uversky, Z Obradovic, AK Dunker
    posted to disorder structure database proj_disocons by chad_davis on 2007-04-23 15:04:21 as ***** along with 4 people carlosjavierna higueruelo choonpeng allmensch
  • Assessing the accuracy of prediction algorithms for classification: an overview
    Bioinformatics, Vol. 16, No. 5. (1 May 2000), pp. 412-424.
    by Pierre Baldi, Soren Brunak, Yves Chauvin, Claus A Andersen, Henrik Nielsen
    posted to classic classification review statistics validation proj_disocons proj_bachelor proj_stabperf by chad_davis on 2006-11-03 13:46:21 as read along with 7 people ihaque eckart_bindewald skrofej girschick Evangelia wenhan sconlan
  • A comparative study of the relationship between protein structure and beta-aggregation in globular and intrinsically disordered proteins.
    J Mol Biol, Vol. 342, No. 1. (3 September 2004), pp. 345-353.
    by R Linding, J Schymkowitz, F Rousseau, F Diella, L Serrano
    posted to disease disorder structure proj_disocons by chad_davis on 2006-07-14 08:58:18 as read
  • Designability, aggregation propensity and duplication of disease-associated proteins.
    Protein Eng Des Sel, Vol. 18, No. 10. (October 2005), pp. 503-508.
    by P Wong, A Fritz, D Frishman
    posted to disease structure proj_disocons by chad_davis on 2006-06-16 12:12:33 as read
  • notes Practical implementation of nonlinear time series methods: The TISEAN package.
    Chaos, Vol. 9, No. 2. (June 1999), pp. 413-435.
    by Rainer Hegger, Holger Kantz, Thomas Schreiber
    posted to algorithm toolkit proj_disocons proj_credo by chad_davis on 2007-01-01 18:12:18 as *
  • Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.
    J Mol Biol, Vol. 293, No. 2. (22 October 1999), pp. 321-331.
    by PE Wright, HJ Dyson
    posted to disorder review structure proj_disocons by chad_davis on 2006-07-16 13:51:44 as read along with 2 people allmensch ARobson
  • Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions.
    J Proteome Res, Vol. 5, No. 4. (April 2006), pp. 879-887.
    by JW Chen, P Romero, VN Uversky, AK Dunker
    posted to disorder database proj_disocons by chad_davis on 2006-07-22 17:26:36 as ****
  • RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins.
    Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3369-3376.
    by ZR Yang, R Thomson, P Mcneil, RM Esnouf
    posted to disorder download proj_disocons by chad_davis on 2006-07-22 11:23:46 as read
  • POIMs: positional oligomer importance matrices--understanding support vector machine-based signal detectors
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i6-14.
    by Soren Sonnenburg, Alexander Zien, Petra Philips, Gunnar Ratsch
    posted to algorithm classification ensemble proj_credo proj_disocons by chad_davis on 2008-07-05 16:29:44 as read along with 1 person papamicd
  • notes Accurate Prediction of Protein Disordered Regions by Mining Protein Structure Data
    Data Mining and Knowledge Discovery, Vol. 11, No. 3. (November 2005), pp. 213-222.
    by Jianlin Cheng, Michael Sweredoski, Pierre Baldi
    posted to disorder proj_disocons by chad_davis on 2006-08-14 14:49:54 as ****
  • SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non synonymous SNPs.
    Bioinformatics (29 June 2006)
    by Joke Reumers, Sebastian M Stroh, Joost Schymkowitz, Frederic Rousseau
    posted to disease database proj_disocons by chad_davis on 2006-08-19 09:28:14 as read along with 4 people and 3 groups caporaso massivemayhem cat_worth skoddet structural_bioinformatics biomedical-nlp Nielsen group
  • Molecular basis of inherited diseases: a structural perspective.
    Trends Genet, Vol. 19, No. 9. (September 2003), pp. 505-513.
    by RE Steward, MW Macarthur, RA Laskowski, JM Thornton
    posted to disease structure proj_disocons by chad_davis on 2006-06-16 12:13:35 as read along with 2 people bicko ramensky
  • Exploiting heterogeneous sequence properties improves prediction of protein disorder.
    Proteins, Vol. 61 Suppl 7 (2005), pp. 176-182.
    by Z Obradovic, K Peng, S Vucetic, P Radivojac, AK Dunker
    posted to classification disorder proj_disocons by chad_davis on 2006-07-21 13:18:24 as read
  • A simple method for displaying the hydropathic character of a protein.
    J Mol Biol, Vol. 157, No. 1. (5 May 1982), pp. 105-132.
    by J Kyte, RF Doolittle
    posted to classic structure algorithm proj_disocons by chad_davis on 2006-11-12 08:51:58 as * along with 7 people thaliana dgront medic0747 netterpaladin ashaytan Ema bicko
  • Comparing and combining predictors of mostly disordered proteins.
    Biochemistry, Vol. 44, No. 6. (15 February 2005), pp. 1989-2000.
    by CJ Oldfield, Y Cheng, MS Cortese, CJ Brown, VN Uversky, AK Dunker
    posted to classification disorder proj_disocons by chad_davis on 2006-11-07 13:45:30 as read along with 2 people carlosjavierna paulschlesinger
  • Towards a structural basis of human non-synonymous single nucleotide polymorphisms.
    Trends Genet, Vol. 16, No. 5. (May 2000), pp. 198-200.
    by S Sunyaev, V Ramensky, P Bork
    posted to disease structure proj_disocons by chad_davis on 2006-11-11 17:27:58 as read along with 2 people and 1 group massivemayhem cat_worth structural_bioinformatics
  • ROC with confidence - a Perl program for receiver operator characteristic curves.
    Comput Methods Programs Biomed, Vol. 64, No. 2. (February 2001), pp. 133-136.
    by HA Kestler
    posted to statistics toolkit proj_disocons by chad_davis on 2007-01-24 17:22:38 as *
  • Primate segmental duplications: crucibles of evolution, diversity and disease
    Nature Reviews Genetics, Vol. 7, No. 7. (13 June 2006), pp. 552-564.
    by Jeffrey A Bailey, Evan E Eichler
    posted to disease evolution review proj_disocons by chad_davis on 2006-06-21 10:50:04 as read along with 2 people and 2 groups jandot dchughes G4ID Genetics-of-Gambling
  • Evaluation of disorder predictions in CASP5.
    Proteins, Vol. 53 Suppl 6 (2003), pp. 561-565.
    by E Melamud, J Moult
    posted to disorder proj_disocons by chad_davis on 2006-07-21 12:58:56 as read
  • Sequence patterns associated with disordered regions in proteins.
    Proteins, Vol. 58, No. 1. (1 January 2005), pp. 144-150.
    by S Lise, DT Jones
    posted to disorder embl proj_disocons by chad_davis on 2006-07-21 16:59:01 as ***** along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • Differences in the evolutionary history of disease genes affected by dominant or recessive mutations
    BMC Genomics, Vol. 7 (03 July 2006), 165.
    by Simon J Furney, Mar M Alba, Nuria L Bigas
    posted to disease proj_disocons by chad_davis on 2006-07-13 20:08:55 as read along with 1 person bpcusack
  • Analysis of ordered and disordered protein complexes reveals structural features discriminating between stable and unstable monomers.
    J Mol Biol, Vol. 341, No. 5. (27 August 2004), pp. 1327-1341.
    by K Gunasekaran, CJ Tsai, R Nussinov
    posted to disorder structure proj_disocons binding by chad_davis on 2006-07-22 11:28:24 as read along with 2 people allmensch marti
  • Protein secondary structure prediction based on position-specific scoring matrices.
    J Mol Biol, Vol. 292, No. 2. (17 September 1999), pp. 195-202.
    by DT Jones
    posted to classic classification structure proj_disocons by chad_davis on 2007-01-08 13:56:07 as * along with 9 people wouterboomsma j3xucite dgront leelarcombe rabio rph dandaman saunders granujilla
  • notes SMART 5: domains in the context of genomes and networks.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by I Letunic, RR Copley, B Pils, S Pinkert, J Schultz, P Bork
    posted to service classic classification disorder embl proj_disocons by chad_davis on 2007-04-02 19:40:37 as *** along with 1 person siebertm
  • Simple sequences are rare in the Protein Data Bank.
    Proteins, Vol. 48, No. 1. (1 July 2002), pp. 134-140.
    by MA Huntley, GB Golding
    posted to disorder structure database proj_disocons by chad_davis on 2006-07-22 17:40:14 as read
  • notes Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.
    Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637.
    by W Kabsch, C Sander
    posted to classic structure proj_disocons by chad_davis on 2007-01-08 09:24:38 as read along with 18 people sebk Diego_Prada pjcite kaarsinogen lna wouterboomsma penka ffranca dgront choonpeng leelarcombe rabio gisle medic0747 martainn chgjb mschofie marti
  • Fold designability, distribution, and disease.
    PLoS Comput Biol, Vol. 2, No. 5. (May 2006)
    by P Wong, D Frishman
    posted to disease structure proj_disocons by chad_davis on 2006-07-14 14:26:34 as read
  • Neurodegenerative disorders of protein aggregation.
    Neurochem Int, Vol. 43, No. 1. (July 2003), pp. 1-7.
    by BS Shastry
    posted to disease proj_disocons by chad_davis on 2006-07-14 16:10:09 as read
  • Intrinsically unstructured proteins.
    Trends Biochem Sci, Vol. 27, No. 10. (October 2002), pp. 527-533.
    by P Tompa
    posted to disorder review structure proj_disocons by chad_davis on 2006-07-16 13:58:16 as read
  • notes PHD -- an automatic mail server for protein secondary structure prediction.
    Comput Appl Biosci, Vol. 10, No. 1. (February 1994), pp. 53-60.
    by B Rost, C Sander, R Schneider
    posted to service classic classification structure proj_disocons by chad_davis on 2007-01-09 14:19:05 as * along with 2 people j3xucite dgront
  • Evolutionary rate heterogeneity in proteins with long disordered regions.
    J Mol Evol, Vol. 55, No. 1. (July 2002), pp. 104-110.
    by CJ Brown, S Takayama, AM Campen, P Vise, TW Marshall, CJ Oldfield, CJ Williams, AK Dunker
    posted to disorder evolution structure proj_disocons by chad_davis on 2006-08-14 13:52:48 as read
  • ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3625-3630.
    by P Puntervoll, R Linding, C Gemuend, Chabanis S Davidson, M Mattingsdal, S Cameron, DM Martin, G Ausiello, B Brannetti, A Costantini, F Ferre, V Maselli, A Via, G Cesareni, F Diella, Superti G Furga, L Wyrwicz, C Ramu, C Mcguigan, R Gudavalli, I Letunic, P Bork, L Rychlewski, B Kuester, Helmer M Citterich, WN Hunter, R Aasland, TJ Gibson
    posted to embl proj_disocons by chad_davis on 2006-12-22 18:54:22 as **** along with 1 person Evangelia
  • POODLE-S: Web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position specific scoring matrix.
    Bioinformatics (28 June 2007)
    by Kana Shimizu, Shuichi Hirose, Tamotsu Noguchi
    posted to service algorithm classification disorder feature_selection proj_disocons by chad_davis on 2008-04-28 15:27:18 as *
  • The unfoldomics decade: an update on intrinsically disordered proteins.
    BMC genomics, Vol. 9 Suppl 2 (2008)
    by AK Dunker, CJ Oldfield, J Meng, P Romero, JY Yang, JW Chen, V Vacic, Z Obradovic, VN Uversky
    posted to structure review proj_disocons ppi disorder binding by chad_davis on 2008-10-10 17:17:41 as *** along with 3 people carlosjavierna guhjy higueruelo
  • Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders.
    Nucleic Acids Res, Vol. 33 Database Issue (1 January 2005)
    by A Hamosh, AF Scott, JS Amberger, CA Bocchini, VA Mckusick
    posted to disease proj_disocons by chad_davis on 2006-07-14 15:51:27 as read along with 6 people guhjy devakiram miguel Nilza raiyar roys
  • Methods for improving protein disorder prediction
    Neural Networks, Vol. 4 (2001), pp. 2718-2723 vol.4.
    by S Vucetic, P Radivojac, Z Obradovic, CJ Brown, AK Dunker
    posted to disorder proj_disocons by chad_davis on 2006-08-14 13:43:20 as read along with 2 people carlosjavierna niallhaslam
  • IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.
    Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3433-3434.
    by Z Dosztanyi, V Csizmok, P Tompa, I Simon
    posted to service disorder download proj_disocons by chad_davis on 2006-07-21 13:09:05 as read along with 1 person kluck
  • Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions.
    Trends Biochem Sci (26 November 2007)
    by Peter Tompa, Monika Fuxreiter
    posted to proj_disocons classification complexes disorder review structure binding by chad_davis on 2007-12-09 20:23:11 as ****
  • FoldUnfold: web server for the prediction of disordered regions in protein chain
    Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2948-2949.
    by Oxana V Galzitskaya, Sergiy O Garbuzynskiy, Michail Y Lobanov
    posted to classification disorder proj_disocons by chad_davis on 2006-11-18 21:05:37 as ****
  • Protein disorder prediction: implications for structural proteomics.
    Structure, Vol. 11, No. 11. (November 2003), pp. 1453-1459.
    by R Linding, LJ Jensen, F Diella, P Bork, TJ Gibson, RB Russell
    posted to structure proj_disocons by chad_davis on 2006-07-14 09:00:08 as read along with 1 person larsjuhljensen
  • Role of intrinsic disorder in transient interactions of hub proteins.
    Proteins, Vol. 66, No. 4. (1 March 2007), pp. 761-765.
    by GP Singh, M Ganapathi, D Dash
    posted to complexes disorder networks proj_disocons binding by chad_davis on 2008-06-15 13:40:59 as **** along with 1 person agustinarce
  • Intrinsic disorder prediction from the analysis of multiple protein fold recognition models.
    Bioinformatics (Oxford, England) (25 June 2008)
    by Liam JJ Mcguffin
    posted to service algorithm classification data_integration disorder ensemble feature_selection proj_disocons structure by chad_davis on 2008-06-29 10:59:50 as read
  • Intrinsic disorder in cell-signaling and cancer-associated proteins.
    J Mol Biol, Vol. 323, No. 3. (25 October 2002), pp. 573-584.
    by LM Iakoucheva, CJ Brown, JD Lawson, Z Obradovic, AK Dunker
    posted to disorder proj_disocons by chad_davis on 2006-07-21 13:25:55 as read along with 1 person allmensch
  • notes Knowledge discovery and knowledge validation in intensive care.
    Artif Intell Med, Vol. 19, No. 3. (July 2000), pp. 225-249.
    by K Morik, M Imhoff, P Brockhausen, T Joachims, U Gather, M Imboff
    posted to validation classification algorithm proj_disocons by chad_davis on 2007-01-25 19:38:46 as **
  • Human Gene Mutation Database (HGMD): 2003 update.
    Hum Mutat, Vol. 21, No. 6. (June 2003), pp. 577-581.
    by PD Stenson, EV Ball, M Mort, AD Phillips, JA Shiel, NS Thomas, S Abeysinghe, M Krawczak, DN Cooper
    posted to disease database proj_disocons by chad_davis on 2006-07-14 15:54:28 as read along with 1 person and 1 group cat_worth structural_bioinformatics
  • The role of disorder in interaction networks: a structural analysis
    Mol Syst Biol, Vol. 4 (25 March 2008)
    by Philip M Kim, Andrea Sboner, Yu Xia, Mark Gerstein
    posted to disorder networks proj_disocons structure yeast binding by chad_davis on 2008-06-30 10:59:42 as **** along with 5 people zwang bootsy biomcgary maralena phoenixzxl
  • Point Mutations in Protein Globular Domains: Contributions from Function, Stability and Misfolding
    Journal of Molecular Biology, Vol. 363, No. 2. (20 October 2006), pp. 422-432.
    by IE Sanchez, J Tejero, Gomez C Moreno, M Medina, L Serrano
    posted to embl structure proj_disocons by chad_davis on 2006-11-02 17:55:55 as read along with 2 people and 2 groups barry cat_worth structural_bioinformatics Bioinformatics
  • Protein disorder prediction at multiple levels of sensitivity and specificity.
    BMC genomics, Vol. 9 Suppl 1 (2008)
    by J Hecker, JY Yang, J Cheng
    posted to algorithm classification disorder proj_disocons review structure by chad_davis on 2008-04-20 11:16:25 as *****
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