registrieren | anmelden | FAQ      [?] 

Tag proj_credo [53 articles]

Recent papers classified by the tag proj_credo.
  • An ensemble of reduced alphabets with protein encoding based on grouped weight for predicting DNA-binding proteins.
    Amino Acids (21 February 2008)
    by Loris Nanni, Alessandra Lumini
    posted to algorithm classification ensemble proj_credo by chad_davis on 2008-02-25 10:40:03 as *****
  • A novel ensemble learning method for de novo computational identification of DNA binding sites
    BMC Bioinformatics, Vol. 8 (12 July 2007), 249.
    by Arijit Chakravarty, Jonathan M Carlson, Radhika S Khetani, Robert H Gross
    posted to algorithm download ensemble feature_selection gene_regulation web_service proj_credo by chad_davis on 2007-08-08 12:26:30 as read along with 2 people and 1 group GustavoLacerda nklee Bioinformatics
  • Assessment of composite motif discovery methods
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Kjetil Klepper, Geir Sandve, Osman Abul, Jostein Johansen, Finn Drablos
    posted to gene_regulation proj_credo review by chad_davis on 2008-02-26 21:25:14 as ***** along with 7 people and 1 group nklee maximilianh idonaldson xili03 csdhwang isimpson yoonk Motif Discovery
  • Melina II: a web tool for comparisons among several predictive algorithms to find potential motifs from promoter regions.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by T Okumura, H Makiguchi, Y Makita, R Yamashita, K Nakai
    posted to ensemble gene_regulation web_service proj_credo by chad_davis on 2007-11-16 13:36:52 as ***** along with 1 person jyuh
  • A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling
    Bioinformatics, Vol. 17, No. 12. (1 December 2001), pp. 1113-1122.
    by Gert Thijs, Magali Lescot, Kathleen Marchal, Stephane Rombauts, Bart De Moor, Pierre Rouze, Yves Moreau
    posted to proj_credo by chad_davis on 2006-06-19 13:54:54 as *** along with 5 people lyongu dquest natstreet nklee xili03
  • Limitations and potentials of current motif discovery algorithms.
    Nucleic Acids Res, Vol. 33, No. 15. (2005), pp. 4899-4913.
    by J Hu, B Li, D Kihara
    posted to proj_credo review by chad_davis on 2006-05-09 17:24:32 as read
  • Applied bioinformatics for the identification of regulatory elements.
    Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 276-287.
    by WW Wasserman, A Sandelin
    posted to proj_credo gene_regulation review by chad_davis on 2007-12-11 14:02:48 as read along with 16 people and 8 groups icases ana moborg gpalidwor dchughes nickluscombe johncumbers giovanni xiaobeizhao bertelsen Stew nklee jdiezperezj ArtemPankin mariakmejia isimpson structural_bioinformatics Bioinformatics EisenLab G4ID EBI-regulation GeschwindLab TNT Genetics-of-Gambling
  • notes MotifVoter: a novel ensemble method for fine-grained integration of generic motif finders.
    Bioinformatics (Oxford, England) (12 August 2008)
    by Edward Wijaya, Siu, Ngo, Rajaraman Kanagasabai, Wing
    posted to algorithm classification ensemble gene_regulation proj_credo by chad_davis on 2008-08-26 18:08:44 as ***** along with 3 people nuin maximilianh idonaldson
  • DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment
    Bioinformatics, Vol. 15, No. 3. (1 March 1999), pp. 211-218.
    by B Morgenstern
    posted to proj_credo by chad_davis on 2006-06-19 13:50:48 as ***
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
    Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816.
    by Encode Consortium
    posted to annotation classic evolution gene_regulation proj_credo by chad_davis on 2007-07-26 16:13:18 as ** along with 11 people and 2 groups waszak jyuh jfr kengg olympos blobbybirdman shikin fpattyn yevishere elfar eskay Bioinformatics UH - Computational Biology
  • SCPD: a promoter database of the yeast Saccharomyces cerevisiae.
    Bioinformatics, Vol. 15, No. 7-8. (g 1999), pp. 607-611.
    by J Zhu, MQ Zhang
    posted to database proj_credo gene_regulation yeast by chad_davis on 2007-11-09 09:10:32 as read along with 4 people xiaobeizhao lusk nklee njcitulike
  • Discovering Motifs in Ranked Lists of DNA Sequences
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e39.
    by Eran Eden, Doron Lipson, Sivan Yogev, Zohar Yakhini
    posted to algorithm gene_regulation proj_credo statistics yeast by chad_davis on 2008-06-26 08:21:09 as **** along with 3 people and 1 group dpollard dquest yevishere EisenLab
  • Assessing computational tools for the discovery of transcription factor binding sites
    Nature Biotechnology, Vol. 23, No. 1. (06 January 2005), pp. 137-144.
    by Martin Tompa, Nan Li, Timothy L Bailey, George M Church, Bart De Moor, Eleazar Eskin, Alexander V Favorov, Martin C Frith, Yutao Fu, James W Kent, Vsevolod J Makeev, Andrei A Mironov, William S Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu
    posted to proj_credo gene_regulation review by chad_davis on 2006-05-09 15:47:40 as read along with 26 people and 6 groups emptyhb bryankr icases ana barry aalibes aprasad jfr tuck lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
  • How does DNA sequence motif discovery work?
    Nature Biotechnology, Vol. 24, No. 8. (2006), pp. 959-961.
    by Patrik D'Haeseleer
    posted to algorithm proj_credo review by chad_davis on 2008-08-30 12:52:43 as ** along with 7 people and 1 group bryankr okarsligil Evangelia antonkratz xi03 idonaldson isimpson Bioinformatics
  • Redefining the goals of protein secondary structure prediction
    Journal of Molecular Biology, Vol. 235, No. 1. (7 January 1994), pp. 13-26.
    by Burkhard Rost, Chris Sander, Reinhard Schneider
    posted to classic classification structure proj_credo by chad_davis on 2006-10-24 19:01:39 as read
  • Of mice and men: phylogenetic footprinting aids the discovery of regulatory elements.
    J Biol, Vol. 2, No. 2. (2003)
    by Z Zhang, M Gerstein
    posted to gene_regulation proj_credo by chad_davis on 2006-05-10 12:01:15 as read
  • notes Efficient and accurate P-value computation for Position Weight Matrices
    Algorithms for Molecular Biology, Vol. 2, No. 1. (2007)
    by Helene Touzet, Jean S Varre
    posted to toolkit statistics proj_credo download algorithm by chad_davis on 2008-10-09 14:26:31 as *** along with 3 people nklee barriot xili03
  • notes Practical implementation of nonlinear time series methods: The TISEAN package.
    Chaos, Vol. 9, No. 2. (June 1999), pp. 413-435.
    by Rainer Hegger, Holger Kantz, Thomas Schreiber
    posted to algorithm toolkit proj_disocons proj_credo by chad_davis on 2007-01-01 18:12:18 as *
  • Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors
    BMC Bioinformatics, Vol. 8 (09 November 2007), 437.
    by Xueping Yu, Jimmy Lin, Donald J Zack, Jiang Qian
    posted to algorithm proj_credo gene_regulation by chad_davis on 2007-11-21 11:03:32 as *** along with 8 people jyuh mikaelhuss nklee maximilianh idonaldson njcitulike bootsy snow_dragon
  • POIMs: positional oligomer importance matrices--understanding support vector machine-based signal detectors
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i6-14.
    by Soren Sonnenburg, Alexander Zien, Petra Philips, Gunnar Ratsch
    posted to algorithm classification ensemble proj_credo proj_disocons by chad_davis on 2008-07-05 16:29:44 as read along with 1 person papamicd
  • CREDO: a web-based tool for computational detection of conserved sequence motifs in noncoding sequences.
    Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4304-4306.
    by T Hindemitt, KF Mayer
    posted to gene_regulation proj_credo by chad_davis on 2006-05-09 17:14:08 as read
  • In silico sequence evolution with site-specific interactions along phylogenetic trees
    Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 716-722.
    by Tanja Gesell, Arndt von Haeseler
    posted to download evolution modelling proj_credo by chad_davis on 2006-06-23 11:13:20 as read along with 2 people and 2 groups marcius tale BioinfoCIPF SGU-CIPF
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
    posted to proj_credo evolution gene_regulation networks yeast by chad_davis on 2007-10-27 13:32:42 as read along with 18 people and 2 groups caseybrown bryankr aalibes dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb nklee anka EisenLab cis-regulatory-evolution
  • Analysis of computational approaches for motif discovery
    Algorithms for Molecular Biology, Vol. 1, No. 1. (19 May 2006), 8.
    by Nan Li, Martin Tompa
    posted to proj_credo by chad_davis on 2006-06-18 15:06:50 as read along with 9 people and 2 groups ana barry tuck dquest lusk nklee maximilianh xi03 csdhwang structural_bioinformatics Bioinformatics
  • OSCAR: One-class SVM for Accurate Recognition of Cis-elements
    Bioinformatics (5 October 2007), btm473.
    by Bo Jiang, Michael Q Zhang, Xuegong Zhang
    posted to algorithm proj_credo classification feature_selection gene_regulation by chad_davis on 2007-11-19 10:24:43 as read along with 6 people and 1 group cassj tmmurali cabbagezs maximilianh idonaldson isimpson csb_journal_club_public
  • SIGffRid: a tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics
    BMC Bioinformatics, Vol. 9 (31 January 2008), 73.
    by Fabrice Touzain, Sophie Schbath, Isabelle D Rennesson, Bertrand Aigle, Gregory Kucherov, Pierre Leblond
    posted to algorithm gene_regulation statistics proj_credo by chad_davis on 2008-02-04 14:02:53 as *** along with 2 people dquest xili03
  • TRANSFAC: transcriptional regulation, from patterns to profiles.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 374-378.
    by V Matys, E Fricke, R Geffers, E Goessling, M Haubrock, R Hehl, K Hornischer, D Karas, AE Kel, Kel OV Margoulis, DU Kloos, S Land, Lewicki B Potapov, H Michael, R Muench, I Reuter, S Rotert, H Saxel, M Scheer, S Thiele, E Wingender
    posted to database proj_credo gene_regulation by chad_davis on 2006-06-19 18:06:41 as read along with 6 people and 1 group aalibes setar GustavoLacerda marti Auger kmdaily Dead 60's
  • PAML: a program package for phylogenetic analysis by maximum likelihood.
    Comput Appl Biosci, Vol. 13, No. 5. (October 1997), pp. 555-556.
    by Z Yang
    posted to proj_credo by chad_davis on 2006-10-24 07:55:44 as * along with 12 people and 3 groups druvus jmjimenez bjorns chrn indigoviolet penka BioNica stajich pv usagi-kirin tharris skumagai EisenLab Nie Berkeley Mycology
  • Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e7.
    by Daniela Raijman, Ron Shamir, Amos Tanay
    posted to evolution gene_regulation proj_credo yeast by chad_davis on 2008-03-17 22:09:23 as **** along with 8 people and 1 group xili03 aalibes sebastien_vigneau lusk Garamonfok nklee maximilianh emptyhb BioinfoCIPF
  • Searching for regulatory elements in human noncoding sequences.
    Curr Opin Struct Biol, Vol. 7, No. 3. (June 1997), pp. 399-406.
    by L Duret, P Bucher
    posted to gene_regulation proj_credo by chad_davis on 2006-05-10 12:02:26 as read along with 2 people nklee lusk
  • A Practical Guide to Support Vector Classification
    (2000)
    by Chih W Hsu, Chih C Chang, Chih J Lin
    posted to proj_disocons proj_credo proj_bachelor classification statistics by chad_davis on 2006-03-04 12:09:32 as *** along with 2 people eguaus mdifranc
  • Algorithms for phylogenetic footprinting.
    J Comput Biol, Vol. 9, No. 2. (2002), pp. 211-223.
    by M Blanchette, B Schwikowski, M Tompa
    posted to review proj_credo by chad_davis on 2006-07-11 08:49:12 as *** along with 2 people nklee dquest
  • FootPrinter: A program designed for phylogenetic footprinting.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3840-3842.
    by M Blanchette, M Tompa
    posted to proj_credo by chad_davis on 2006-06-19 13:51:58 as read along with 2 people kaur balajis
  • Natural Similarity Measures between Position Frequency Matrices with an Application to Clustering.
    Bioinformatics (2 January 2008)
    by Utz JJ Pape, Sven Rahmann, Martin Vingron
    posted to algorithm clustering gene_regulation statistics proj_credo by chad_davis on 2008-01-31 16:22:47 as **** along with 5 people nklee maximilianh mclarenv csdhwang kmdaily
  • EnsemPro: An ensemble approach to predicting transcription start sites in human genomic DNA sequences.
    Genomics (26 December 2007)
    by Hong, Min, Seonwoo Kim, Jong
    posted to ensemble proj_credo feature_selection gene_regulation by chad_davis on 2008-01-06 10:21:47 as ***** along with 1 person maximilianh
  • Evaluating phylogenetic footprinting for humanrodent comparisons
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 430-437.
    by Tilman Sauer, Ekaterina Shelest, Edgar Wingender
    posted to proj_credo by chad_davis on 2006-06-23 11:47:17 as *** along with 1 person cisevol
  • Machine Learning and Its Applications to Biology.
    PLoS Comput Biol, Vol. 3, No. 6. (29 June 2007)
    by Adi LL Tarca, Vincent JJ Carey, Xue, Roberto Romero, Sorin Drăghici
    posted to algorithm proj_credo proj_disocons proj_stabperf classification clustering review statistics by chad_davis on 2007-09-03 15:43:35 as ** along with 5 people and 1 group klouie jfr rsantana gsiwo groepl Bioinformatics
  • What's wrong with Bonferroni adjustments.
    BMJ, Vol. 316, No. 7139. (18 April 1998), pp. 1236-1238.
    by TV Perneger
    posted to proj_credo proj_disocons review statistics validation by chad_davis on 2007-11-20 13:01:43 as read along with 1 person StephenWeigand
  • Identification and analysis of eukaryotic promoters: recent computational approaches.
    Trends Genet, Vol. 17, No. 2. (February 2001), pp. 56-60.
    by U Ohler, H Niemann
    posted to proj_credo gene_regulation review by chad_davis on 2006-05-09 15:48:26 as read along with 3 people and 2 groups rklancer ana barry structural_bioinformatics Bioinformatics
  • Transcriptional regulatory code of a eukaryotic genome
    Nature, Vol. 431, No. 7004. (2004), pp. 99-104.
    by Christopher T Harbison, Benjamin D Gordon, Tong I Lee, Nicola J Rinaldi, Kenzie D Macisaac, Timothy W Danford, Nancy M Hannett, Jean B Tagne, David B Reynolds, Jane Yoo, Ezra G Jennings, Julia Zeitlinger, Dmitry K Pokholok, Manolis Kellis, Alex P Rolfe, Ken T Takusagawa, Eric S Lander, David K Gifford, Ernest Fraenkel, Richard A Young
    posted to experimental gene_regulation networks yeast proj_credo by chad_davis on 2008-01-28 10:24:50 as **** along with 24 people and 8 groups alokm tuck lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk nklee cisevol njcitulike xili03 brant mariakmejia kristallreiner snow_dragon aalibes Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab
  • Eukaryotic transcription factor binding sites - modeling and integrative search methods
    Bioinformatics (21 April 2008), btn198.
    by Sridhar Hannenhalli
    posted to gene_regulation proj_credo review binding by chad_davis on 2008-06-15 13:35:43 as **** along with 9 people nklee oannes hplatero maximilianh heliopais bootsy Ema sameetmehta jyuh
  • Decoding human regulatory circuits.
    Genome Res, Vol. 14, No. 10A. (October 2004), pp. 1967-1974.
    by W Thompson, MJ Palumbo, WW Wasserman, JS Liu, CE Lawrence
    posted to algorithm gene_regulation proj_credo statistics by chad_davis on 2008-03-13 13:07:37 as *** along with 1 person and 1 group indigoviolet EisenLab
  • Practical Strategies for Discovering Regulatory DNA Sequence Motifs
    PLoS Computational Biology, Vol. 2, No. 4. (1 April 2006), e36.
    by Kenzie D Macisaac, Ernest Fraenkel
    posted to classification gene_regulation review proj_credo by chad_davis on 2008-01-28 10:22:04 as *** along with 8 people and 2 groups nuin bryankr ana balicea hggr GustavoLacerda svdate kristallreiner structural_bioinformatics Bioinformatics
  • Discovery of Regulatory Elements by a Computational Method for Phylogenetic Footprinting
    Genome Res., Vol. 12, No. 5. (1 May 2002), pp. 739-748.
    by Mathieu Blanchette, Martin Tompa
    posted to proj_credo by chad_davis on 2006-07-11 08:51:13 as *** along with 5 people and 2 groups balajis lyongu dpollard dquest csdhwang EisenLab cis-regulatory-evolution
  • notes Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    Bioinformatics, Vol. 15, No. 7. (1 July 1999), pp. 563-577.
    by Gz Hertz, Gd Stormo
    posted to algorithm alignment download gene_regulation proj_credo statistics by chad_davis on 2008-07-06 17:25:57 as read along with 4 people and 1 group tuck indigoviolet dquest lusk EisenLab
  • A unified approach to false discovery rate estimation
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Korbinian Strimmer
    posted to algorithm classification download proj_credo statistics validation by chad_davis on 2008-07-09 14:56:45 as *** along with 5 people dolchan barriot nuin joaocarrico shigepong
  • The Eukaryotic Promoter Database (EPD)
    Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 302-303.
    by Rouaida C Perier, Viviane Praz, Thomas Junier, Claude Bonnard, Philipp Bucher
    posted to database gene_regulation proj_credo web_service by chad_davis on 2008-03-10 10:18:59 as read
  • Improving computational predictions of cis-regulatory binding sites.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2006), pp. 391-402.
    by M Robinson, Y Sun, RT Boekhorst, P Kaye, R Adams, N Davey, AG Rust
    posted to proj_credo gene_regulation classification algorithm by chad_davis on 2008-10-09 13:12:23 as *****
  • An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance
    BMC Bioinformatics, Vol. 9 (07 February 2008), 89.
    by Ana C Casimiro, Susana Vinga, Ana T Freitas, Arlindo L Oliveira
    posted to gene_regulation statistics validation yeast algorithm proj_credo by chad_davis on 2008-02-11 15:05:30 as *** along with 3 people idonaldson xili03 isimpson
  • Finding functional features in Saccharomyces genomes by phylogenetic footprinting.
    Science, Vol. 301, No. 5629. (4 July 2003), pp. 71-76.
    by P Cliften, P Sudarsanam, A Desikan, L Fulton, B Fulton, J Majors, R Waterston, BA Cohen, M Johnston
    posted to gene_regulation proj_credo by chad_davis on 2006-05-09 15:56:43 as read along with 4 people and 1 group evaf dquest Eonwe cisevol cis-regulatory-evolution
    • Bemerkung: Sie können diese Seite wie folgt zitieren: http://www.citeulike.org/tag/proj_credo

    Result page: 1 2 Next RIS BibTeX
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.