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Tag prediction_interface [12 articles]

Recent papers classified by the tag prediction_interface.
  • A Dominant Conformational Role for Amino Acid Diversity in Minimalist Protein-Protein Interfaces
    Journal of Molecular Biology, Vol. 381, No. 2. (29 August 2008), pp. 407-418.
    by Ryan N Gilbreth, Kaori Esaki, Akiko Koide, Sachdev S Sidhu, Shohei Koide
    posted to prediction_interface by phoenixzxl on 2008-07-18 02:47:47 as ** along with 2 people mapplab zwang
  • Insights into Protein-Protein Interfaces using a Bayesian Network Prediction Method
    Journal of Molecular Biology, Vol. In Press, Corrected Proof
    by James R Bradford, Chris J Needham, Andrew J Bulpitt, David R Westhead
    posted to prediction_interface bayesian by phoenixzxl on 2008-03-15 01:51:40 as ** along with 7 people and 2 groups barry conkymacro ameetsoni grahamc massivemayhem marti paolomarcatili structural_bioinformatics Bioinformatics
  • Characterization of Domain-Peptide Interaction Interface: A Case Study on the Amphiphysin-1 SH3 Domain
    Journal of Molecular Biology, Vol. 376, No. 4. (29 February 2008), pp. 1201-1214.
    by Tingjun Hou, Wei Zhang, David A Case, Wei Wang
    posted to prediction_interface by phoenixzxl on 2008-03-17 12:11:01 as ***
  • A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity
    Bioinformatics, Vol. 22, No. 19. (1 October 2006), pp. 2333-2339.
    by E Ferraro, A Via, G Ausiello, M Helmer-Citterich
    posted to machine_learning prediction_ddi prediction_interface specificity by phoenixzxl on 2008-03-31 03:44:33 as **
  • Design of Multi-Specificity in Protein Interfaces
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e164.
    by Elisabeth L Humphris, Tanja Kortemme
    posted to prediction_interface specificity synthetic_biology by phoenixzxl on 2008-06-23 11:03:15 as ** along with 7 people and 3 groups msuarezdiez jwm bicko Einat dpollard Scis0000002 marck structural_bioinformatics Bioinformatics EisenLab
  • Interaction-Site Prediction for Protein Complexes: a Critical Assessment
    Bioinformatics (22 June 2007), btm323.
    by Huan-Xiang Zhou, Sanbo Qin
    posted to machine_learning prediction_interface prediction_ppi review by phoenixzxl on 2008-03-19 06:03:59 as *** along with 11 people timg tjimenez bicko malcook zwang cabbagezs niallhaslam carlescorbi marti higueruelo kintoki
  • Reaching for high-hanging fruit in drug discovery at protein–protein interfaces
    Nature, Vol. 450, No. 7172. (12 December 2007), pp. 1001-1009.
    by James A Wells, Christopher L Mcclendon
    posted to insight prediction_interface proteins_to_proteomes review by phoenixzxl on 2008-03-28 05:47:11 as ** along with 6 people ramensky cjeans chgjb higueruelo bicko guhjy
  • Characterization of domain-peptide interaction interface: a generic structure-based model to decipher the binding specificity of SH3 domains
    Mol Cell Proteomics (20 November 2008), M800450-MCP200.
    by Tingjun Hou, Zheng Xu, Wei Zhang, William A Mclaughlin, David A Case, Yang Xu, Wei Wang
    posted to structure_aided specificity prediction_interface domain by phoenixzxl on 2008-11-25 01:20:19 as **** along with 1 person zwang
  • Improved prediction of protein-protein binding sites using a support vector machines approach
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1487-1494.
    by James R Bradford, David R Westhead
    posted to prediction_interface svm by phoenixzxl on 2008-03-15 01:52:59 as ** along with 8 people bicko sriram_s chaleil ameetsoni cjeans Evangelia marti OriginalLurch
  • Relating three-dimensional structures to protein networks provides evolutionary insights.
    Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941.
    by PM Kim, LJ Lu, Y Xia, MB Gerstein
    posted to dynamics network_dynamic network_evolution network_ppi prediction_interface by phoenixzxl on 2008-04-06 05:22:52 as **** along with 18 people and 2 groups cerca bicko lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane Pao-Yang carlk paolomarcatili saket structural_bioinformatics kdl
  • Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Andrew Bordner, Andrey Gorin
    posted to complex data_integration prediction_interface by phoenixzxl on 2008-05-13 07:28:04 as *** along with 4 people chad_davis guhjy neils bicko
  • Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking.
    Proceedings of the National Academy of Sciences of the United States of America (29 May 2008)
    by Hocine Madaoui, Raphaël Guerois
    posted to co-evolution complex prediction_interface by phoenixzxl on 2008-06-03 07:10:50 as ** along with 3 people cabbagesofdoom bicko zwang
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