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Tag ppi-review [28 articles]

Recent papers classified by the tag ppi-review.
  • Computational methods of analysis of protein-protein interactions.
    Curr Opin Struct Biol, Vol. 13, No. 3. (June 2003), pp. 377-382.
    by L Salwinski, D Eisenberg
    posted to interaction-partner-prediction ppi-review by bicko on 2006-01-13 19:16:19 as ** along with 2 people and 2 groups okarsligil lfriedl kdl Bioinformatics
  • The third dimension for protein interactions and complexes.
    Trends Biochem Sci, Vol. 27, No. 12. (December 2002), pp. 633-638.
    by P Aloy, RB Russell
    posted to modelling-interactions ppi-experimental-methods ppi-review systems-biology by bicko on 2005-10-19 16:41:44 as ** along with 2 people chad_davis dgront
  • Conformational changes associated with protein-protein interactions
    Current Opinion in Structural Biology, Vol. 14, No. 1. (February 2004), pp. 104-109.
    by Chern-Sing Goh, Duncan Milburn, Mark Gerstein
    posted to conformational-change interface-properties ppi-review protein-flexibility by bicko on 2006-01-13 18:41:20 as ** along with 2 people apaydin nigham
  • The molecular architecture of protein-protein binding sites
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Dana Reichmann, Ofer Rahat, Mati Cohen, Hani Neuvirth, Gideon Schreiber
    posted to hot-spots interface-properties ppi-review by bicko on 2007-09-27 12:10:42 as ** along with 4 people choonpeng hmk higueruelo marti
  • Ten thousand interactions for the molecular biologist
    Nat Biotech, Vol. 22, No. 10. (October 2004), pp. 1317-1321.
    by Patrick Aloy, Robert B Russell
    posted to interface-properties ppi-review protein-networks by bicko on 2005-10-13 10:37:11 as *** along with 10 people and 2 groups baaden jwm chad_davis dullhunk dgront drastic ruvido Evangelia higueruelo timg Radiation_Damage Stressosome
  • Assessing predictions of protein-protein interaction: the CAPRI experiment.
    Protein Sci, Vol. 14, No. 2. (February 2005), pp. 278-283.
    by J Janin
    posted to capri docking-algorithm docking-benchmark ppi-review by bicko on 2005-10-18 16:38:43 as ** along with 4 people and 1 group csrocha barry ima drastic structural_bioinformatics
  • Structure, function, and evolution of transient and obligate protein-protein interactions.
    Proc Natl Acad Sci U S A (25 July 2005)
    by Julian Mintseris, Zhiping Weng
    posted to obligate-transient ppi-evolution ppi-review quaternary-structure by bicko on 2005-10-17 11:15:59 as ***** along with 9 people and 3 groups barry bjorns wiehe julianm chad_davis cjeans Evangelia marti higueruelo structural_bioinformatics ZLAB Bioinformatics
  • Protein-protein docking: is the glass half-full or half-empty?
    Trends Biotechnol, Vol. 22, No. 3. (March 2004), pp. 110-116.
    by S Vajda, CJ Camacho
    posted to docking-algorithm ppi-review by bicko on 2005-10-13 10:31:32 as ** along with 2 people and 1 group anita selrac structure-bii
  • Computational methods for biomolecular docking.
    Curr Opin Struct Biol, Vol. 6, No. 3. (June 1996), pp. 402-406.
    by T Lengauer, M Rarey
    posted to docking-algorithm ppi-review by bicko on 2006-01-12 12:43:50 as ** along with 1 person chad_davis
  • New methodologies for measuring protein interactions in vivo and in vitro
    Current Opinion in Structural Biology, Vol. 15, No. 1. (February 2005), pp. 4-14.
    by Jacob Piehler
    posted to ppi-experimental-methods ppi-review by bicko on 2005-10-14 09:51:04 as **
  • Structural systems biology: modelling protein interactions
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 3. (March 2006), pp. 188-197.
    by Patrick Aloy, Robert B Russell
    posted to modelling-interactions ppi-review systems-biology by bicko on 2006-03-16 17:00:56 as ** along with 19 people and 3 groups ana aalibes xico dgront drastic choonpeng henschel ruvido massivemayhem cat_worth fishtank iris_2001 gvuister lpfernandes Evangelia andreas_foersch higueruelo chad_davis jteyra structural_bioinformatics Bioinformatics WetBiology
  • Progress in Modeling of Protein Structures and Interactions
    Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642.
    by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker
    posted to capri casp ppi-review review by bicko on 2006-06-21 14:30:25 as ** along with 13 people and 3 groups thaliana jwm vavi KyuhoLee marcius eweaver tny nickolay dgront rsantana mirzazadeh insectopalo barry BioinfoCIPF SGU-CIPF structural_bioinformatics
  • On proteins, grids, correlations, and docking.
    C R Biol, Vol. 327, No. 5. (May 2004), pp. 409-420.
    by M Eisenstein, E Katchalski-Katzir
    posted to docking-algorithm fourier-transform ppi-review by bicko on 2006-06-23 01:31:48 as **
  • A structural perspective on protein-protein interactions.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 313-324.
    by RB Russell, F Alber, P Aloy, FP Davis, D Korkin, M Pichaud, M Topf, A Sali
    posted to modelling-interactions ppi-review systems-biology by bicko on 2005-10-13 10:38:07 as ***** along with 13 people and 1 group baaden anita chad_davis dgront sriram_s ruvido cjeans Evangelia Pao-Yang marti higueruelo jteyra timg structure-bii
  • From words to literature in structural proteomics.
    Nature, Vol. 422, No. 6928. (13 March 2003), pp. 216-225.
    by A Sali, R Glaeser, T Earnest, W Baumeister
    posted to ppi-experimental-methods ppi-review by bicko on 2007-09-18 14:57:01 as ** along with 6 people tomhebbron chad_davis dgront ruvido lpfernandes higueruelo
  • Principles of docking: An overview of search algorithms and a guide to scoring functions.
    Proteins, Vol. 47, No. 4. (1 June 2002), pp. 409-443.
    by I Halperin, B Ma, H Wolfson, R Nussinov
    posted to docking-algorithm docking-scoring-function ppi-review by bicko on 2005-10-14 12:33:54 as **** along with 20 people and 3 groups timg dgruiz cantupaz apaydin chad_davis yongzhao ttjoseph nickolay ima sangeetha dgront blackbart gane5h mmuecke kazemi bpagano massivemayhem cjeans Evangelia nigham Bioinformatics TSRI_MGL insilicodrug
  • Interrogating protein interaction networks through structural biology.
    Proc Natl Acad Sci U S A, Vol. 99, No. 9. (30 April 2002), pp. 5896-5901.
    by P Aloy, RB Russell
    posted to ppi-review modelling-interactions interface-properties by bicko on 2005-10-18 16:21:11 as ** along with 12 people and 3 groups tomhebbron bpcusack ana barry baaden lfriedl chad_davis henschel ruvido cjeans tale Evangelia structural_bioinformatics kdl Bioinformatics
  • A docking analysis of the statistical physics of protein-protein recognition.
    Phys Biol, Vol. 2, No. 1-2. (June 2005)
    by J Bernauer, A Poupon, J Azé, J Janin
    posted to docking-scoring-function interface-properties ppi-review by bicko on 2006-09-25 13:55:47 as ** along with 2 people drastic kintoki
  • Principles of protein-protein interactions.
    Proc Natl Acad Sci U S A, Vol. 93, No. 1. (9 January 1996), pp. 13-20.
    by S Jones, JM Thornton
    posted to interface-properties ppi-review by bicko on 2005-10-19 11:56:43 as ** along with 3 people chad_davis Evangelia iris_2001
  • Protein complexes: structure prediction challenges for the 21(st) century.
    Curr Opin Struct Biol, Vol. 15, No. 1. (February 2005), pp. 15-22.
    by P Aloy, M Pichaud, RB Russell
    posted to interaction-partner-prediction modelling-interactions ppi-experimental-methods ppi-review by bicko on 2005-10-13 10:33:07 as **** along with 6 people karbak aalibes baaden chad_davis marti higueruelo
  • Prediction of protein-protein interactions by docking methods.
    Curr Opin Struct Biol, Vol. 12, No. 1. (February 2002), pp. 28-35.
    by GR Smith, MJ Sternberg
    posted to docking-algorithm ppi-review by bicko on 2005-10-17 15:59:05 as ** along with 2 people LeightonP selrac
  • Biochemistry. Proteins in a small world.
    Science, Vol. 314, No. 5807. (22 December 2006), pp. 1882-1883.
    by TO Yeates, M Beeby
    posted to quaternary-structure protein-networks ppi-review ppi-evolution by bicko on 2007-01-12 18:45:24 as ** along with 1 person and 1 group lfriedl kdl
  • Protein-protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach.
    Phys Biol, Vol. 2, No. 1-2. (June 2005)
    by Ozlem Keskin, Buyong Ma, Kristina Rogale, K Gunasekaran, Ruth Nussinov
    posted to interface-properties ppi-review protein-networks systems-biology by bicko on 2006-06-14 12:22:26 as ** along with 2 people choonpeng higueruelo
  • Structures in systems biology.
    Curr Opin Struct Biol (14 June 2007)
    by Pedro Beltrao, Christina Kiel, Luis Serrano
    posted to ppi-review systems-biology by bicko on 2008-08-14 19:15:21 as ** along with 2 people dullhunk choonpeng
  • Data-driven docking for the study of biomolecular complexes.
    FEBS J, Vol. 272, No. 2. (January 2005), pp. 293-312.
    by AD van Dijk, R Boelens, AM Bonvin
    posted to docking-algorithm docking-scoring-function guided-docking ppi-review by bicko on 2006-01-25 12:24:18 as ***** along with 5 people and 1 group dgruiz anita gloria Evangelia higueruelo structure-bii
  • Highly specific protein-protein interactions, evolution and negative design.
    Phys Biol, Vol. 1, No. 3-4. (December 2004), pp. 166-172.
    by RP Sear
    posted to ppi-evolution ppi-review by bicko on 2006-02-17 15:31:50 as **
  • Relating three-dimensional structures to protein networks provides evolutionary insights.
    Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941.
    by PM Kim, LJ Lu, Y Xia, MB Gerstein
    posted to quaternary-structure protein-networks ppi-review ppi-evolution by bicko on 2007-01-09 18:06:43 as ** along with 18 people and 2 groups cerca lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane Pao-Yang phoenixzxl carlk paolomarcatili saket structural_bioinformatics kdl
  • Diversity of protein-protein interactions.
    EMBO J, Vol. 22, No. 14. (15 July 2003), pp. 3486-3492.
    by IM Nooren, JM Thornton
    posted to ppi-evolution ppi-review quaternary-structure by bicko on 2005-10-14 12:31:01 as ** along with 4 people chad_davis drastic Evangelia higueruelo
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