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Tag positiveselection [44 articles]

Recent papers classified by the tag positiveselection.
  • Positive Selection in the Human Genome: From Genome Scans to Biological Significance
    Annual Review of Genomics and Human Genetics, Vol. 9, No. 1. (2008), pp. 143-160.
    by Joanna L Kelley, Willie J Swanson
    posted to positiveselection genome evolution by zwang on 2008-09-04 06:34:21 as ** along with 3 people diamantis pradiptaray gjuggler
  • A Map of Recent Positive Selection in the Human Genome.
    PLoS Biol, Vol. 4, No. 3. (7 March 2006)
    by Benjamin F F Voight, Sridhar Kudaravalli, Xiaoquan Wen, Jonathan K K Pritchard
    posted to adaptation positiveselection by suizan on 2007-10-07 11:34:03 as ** along with 22 people and 7 groups renewang diamantis stevanspringer kentsis bpb balajis indigoviolet ejeffery pradiptaray madhadron breden tiago larios ashandanj hdopazo livingthingdan djkt mbeautru grahamc shoshin iris42 dmc Bioinformatics EisenLab FAB-lab SFUAntibodyResearch BioinfoCIPF livingthing Durbin group
  • Selective Constraints in Experimentally Defined Primate Regulatory Regions
    PLoS Genet, Vol. 4, No. 8. (2008), e1000157.
    by Daniel J Gaffney, Ran Blekhman, Jacek Majewski
    posted to cns-differences positiveselection by maximilianh on 2008-08-18 09:17:40 as ** along with 9 people and 2 groups xianjun madreach alhufton djkt bpcusack aprasad pradiptaray caseybrown cisevol BergmanLab cis-regulatory-evolution
  • Linkage disequilibrium as a signature of selective sweeps.
    Genetics, Vol. 167, No. 3. (July 2004), pp. 1513-1524.
    by Y Kim, R Nielsen
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:30:47 as **
  • Localizing Recent Adaptive Evolution in the Human Genome
    PLoS Genetics, Vol. 3, No. 6. (1 June 2007), e90.
    by Scott H Williamson, Melissa J Hubisz, Andrew G Clark, Bret A Payseur, Carlos D Bustamante, Rasmus Nielsen
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:18:42 as ** along with 9 people and 1 group renewang mbj brant dpollard madhadron candypmcg shoshin emarker iris42 EisenLab
  • Natural selection on protein-coding genes in the human genome
    Nature, Vol. 437, No. 7062., pp. 1153-1157.
    by Carlos D Bustamante, Adi Fledel-Alon, Scott Williamson, Rasmus Nielsen, Melissa T Hubisz, Stephen Glanowski, David M Tanenbaum, Thomas J White, John J Sninsky, Ryan D Hernandez, Daniel Civello, Mark D Adams, Michele Cargill, Andrew G Clark
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:49:21 as ** along with 17 people and 4 groups renewang jo_davies stevanspringer operon jwortman aprasad dayjm balajis marcius dpollard hdopazo djkt JBEgwa01 ramensky Garamonfok iris42 shoshin EisenLab FAB-lab BioinfoCIPF SGU-CIPF
  • Hitchhiking under positive Darwinian selection.
    Genetics, Vol. 155, No. 3. (July 2000), pp. 1405-1413.
    by JC Fay, CI Wu
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:33:17 as ** along with 2 people operon ramensky
  • SEQUENCE DIVERGENCE, FUNCTIONAL CONSTRAINT, AND SELECTION IN PROTEIN EVOLUTION
    Annual Review of Genomics and Human Genetics, Vol. 4, No. 1. (2003), pp. 213-235.
    by Justin C Fay, Chung I Wu
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:43:14 as ** along with 2 people renewang operon
  • Compound Tests for the Detection of Hitchhiking Under Positive Selection
    Mol Biol Evol (8 June 2007), msm119.
    by Kai Zeng, Suhua Shi, Chung-I Wu
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:40:41 as ** along with 1 person cjeans
  • Statistical Tests for Detecting Positive Selection by Utilizing High-Frequency Variants
    Genetics, Vol. 174, No. 3. (1 November 2006), pp. 1431-1439.
    by Kai Zeng, Yun-Xin Fu, Suhua Shi, Chung-I Wu
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:42:10 as ** along with 3 people and 1 group stevanspringer operon ramensky FAB-lab
  • Approaches for identifying targets of positive selection
    Trends in Genetics, Vol. 23, No. 11. (November 2007), pp. 568-577.
    by Jeffrey D Jensen, Alex Wong, Charles F Aquadro
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:10:15 as ** along with 3 people and 1 group dchughes stajich candypmcg EisenLab
  • How reliable are empirical genomic scans for selective sweeps?
    Genome Res, Vol. 16, No. 6. (June 2006), pp. 702-712.
    by KM Teshima, G Coop, M Przeworski
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:42:36 as ** along with 3 people and 1 group renewang indigoviolet hawksjohnd EisenLab
  • Detecting a local signature of genetic hitchhiking along a recombining chromosome.
    Genetics, Vol. 160, No. 2. (February 2002), pp. 765-777.
    by Y Kim, W Stephan
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:47:38 as read
  • The signature of positive selection on standing genetic variation.
    Evolution Int J Org Evolution, Vol. 59, No. 11. (November 2005), pp. 2312-2323.
    by M Przeworski, G Coop, JD Wall
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:40:07 as ** along with 1 person ejeffery
  • Progress and prospects in mapping recent selection in the genome
    Heredity, Vol. aop, No. current.
    by KR Thornton, JD Jensen, C Becquet, P Andolfatto
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:08:47 as read along with 1 person candypmcg
  • Inferring Selection in Partially Sequenced Regions
    Mol Biol Evol (28 December 2007), msm273.
    by Jeffrey D Jensen, Kevin R Thornton, Charles F Aquadro
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:35:22 as ** along with 2 people djkt smbe2008
  • The Hitchhiking Effect on Linkage Disequilibrium Between Linked Neutral Loci
    Genetics, Vol. 172, No. 4. (1 April 2006), pp. 2647-2663.
    by Wolfgang Stephan, Yun S Song, Charles H Langley
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:32:13 as ** along with 3 people renewang ccots balicea
  • Recent and ongoing selection in the human genome
    Nat Rev Genet, Vol. 8, No. 11. (November 2007), pp. 857-868.
    by Rasmus Nielsen, Ines Hellmann, Melissa Hubisz, Carlos Bustamante, Andrew G Clark
    posted to human-evolution positiveselection review selection by lh3 to the group Durbin group on 2008-03-08 10:20:58 as read along with 9 people renewang kndiaye dchughes ramensky Garamonfok candypmcg ryanraaum bpcusack gjuggler
  • On the Utility of Linkage Disequilibrium as a Statistic for Identifying Targets of Positive Selection in Nonequilibrium Populations
    Genetics, Vol. 176, No. 4. (1 August 2007), pp. 2371-2379.
    by Jeffrey D Jensen, Kevin R Thornton, Carlos D Bustamante, Charles F Aquadro
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:03:35 as read along with 2 people lp2 ryanraaum
  • Estimating the time since the fixation of a beneficial allele.
    Genetics, Vol. 164, No. 4. (August 2003), pp. 1667-1676.
    by M Przeworski
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:43:33 as ** along with 1 person candypmcg
  • Genomic scans for selective sweeps using SNP data.
    Genome Res, Vol. 15, No. 11. (November 2005), pp. 1566-1575.
    by R Nielsen, S Williamson, Y Kim, MJ Hubisz, AG Clark, C Bustamante
    posted to positiveselection by dmc to the group Durbin group on 2008-03-07 11:11:21 as ** along with 5 people and 2 groups renewang stevanspringer balajis ashandanj ramensky Bioinformatics FAB-lab
  • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution.
    Mol Biol Evol, Vol. 15, No. 5. (May 1998), pp. 568-573.
    by Z Yang
    posted to evolution paml positiveselection by Garamonfok on 2008-03-05 17:46:09 as read along with 3 people gjuggler AaronDarling usagi-kirin
  • Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome.
    PLoS Comput Biol, Vol. 2, No. 4. (April 2006)
    by L Arbiza, J Dopazo, H Dopazo
    posted to evolution positiveselection by Garamonfok on 2008-03-06 11:05:32 as read along with 5 people and 3 groups operon marcius jordibc hdopazo rvosa BioinfoCIPF SGU-CIPF FAB-lab
  • Quaternary Structure Constraints on Evolutionary Sequence Divergence
    Molecular Biology and Evolution, Vol. 24, No. 2. (February 2007), pp. 349-351.
    by Fornasari, Maria Silvina, Parisi, Gustavo, Echave, Julian
    posted to evolution hyphy positiveselection tools by Garamonfok on 2008-03-14 13:14:57 as ** along with 1 person zwang
  • Robust inference of positive selection from recombining coding sequences
    Bioinformatics, Vol. 22, No. 20. (15 October 2006), pp. 2493-2499.
    by Scheffler, Konrad, Martin, P Darren, Seoighe, Cathal
    posted to evolution hyphy positiveselection tools by Garamonfok on 2008-03-14 13:02:26 as ** along with 2 people operon Natasha
  • Mechanisms and Rates of Birth and Death of Dispersed Duplicated Genes during the Evolution of a Multigene Family in Diploid and Tetraploid Wheats
    Molecular Biology and Evolution, Vol. 24, No. 2. (February 2007), pp. 539-550.
    by Akhunov, D Eduard, Akhunova, R Alina, Dvorak, Jan
    posted to evolution hyphy positiveselection by Garamonfok on 2008-03-14 13:15:51 as **
  • Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages.
    Mol Biol Evol, Vol. 19, No. 6. (June 2002), pp. 908-917.
    by Z Yang, R Nielsen
    posted to evolution paml positiveselection by Garamonfok on 2008-03-05 17:56:01 as ** along with 4 people and 2 groups skembel stevanspringer operon stajich FAB-lab Berkeley Mycology
  • Recombination in AIDS viruses.
    J Mol Evol, Vol. 40, No. 3. (March 1995), pp. 249-259.
    by DL Robertson, BH Hahn, PM Sharp
    posted to adaptiveevolution evolution paml positiveselection by Garamonfok on 2008-03-05 17:42:25 as read
  • Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection
    Molecular Biology and Evolution, Vol. 22, No. 4. (April 2005), pp. 1107-1118.
    by Ziheng Yang, Wendy S Wong, Rasmus Nielsen
    posted to evolution paml positiveselection by Garamonfok on 2008-03-05 18:01:13 as ** along with 6 people and 1 group rabu BioNica Natasha stajich skumagai CharlesM Berkeley Mycology
  • Sheep Mitochondrial DNA Variation in European, Caucasian, and Central Asian Areas
    Mol Biol Evol, Vol. 23, No. 9. (1 September 2006), pp. 1776-1783.
    by Miika Tapio, Nurbiy Marzanov, Mikhail Ozerov, Mirjana Cinkulov, Galina Gonzarenko, Tatyana Kiselyova, Maciej Murawski, Haldja Viinalass, Juha Kantanen
    posted to evolution hyphy positiveselection by Garamonfok on 2008-03-14 13:06:40 as ** along with 1 person Montrachet
  • Human PAML browser: a database of positive selection on human genes using phylogenetic methods.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by GC Nickel, D Tefft, MD Adams
    posted to evolution paml positiveselection tools by Garamonfok on 2008-02-09 15:43:26 as ***** along with 1 person operon
  • Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection
    Molecular Biology and Evolution, Vol. 22, No. 5. (15 May 2005), pp. 1208-1222.
    by SL Kosakovsky, Simon D Frost
    posted to evolution hyphy positiveselection by Garamonfok on 2008-03-14 13:00:08 as ** along with 5 people druvus operon BioNica marck gjuggler
  • Initial sequence of the chimpanzee genome and comparison with the human genome
    Nature, Vol. 437, No. 7055., pp. 69-87.
    by The
    posted to evolution positiveselection by Garamonfok on 2008-02-09 15:51:41 as ***** along with 10 people and 3 groups cannin chrn aprasad great_apes indigoviolet dullhunk djkt JeffR100 iris42 rvosa biodiversity_conservation EisenLab FAB-lab
  • Codon-Substitution Models for Heterogeneous Selection Pressure at Amino Acid Sites
    Genetics, Vol. 155, No. 1. (1 May 2000), pp. 431-449.
    by Ziheng Yang, Rasmus Nielsen, Nick Goldman, Anne-Mette K Pedersen
    posted to evolution paml positiveselection by Garamonfok on 2008-03-05 17:43:51 as read along with 8 people druvus fernan BioNica Natasha dylan77 tale gjuggler emptyhb
  • Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level
    Mol Biol Evol, Vol. 22, No. 12. (1 December 2005), pp. 2472-2479.
    by Jianzhi Zhang, Rasmus Nielsen, Ziheng Yang
    posted to evolution paml positiveselection by Garamonfok on 2008-03-05 17:51:05 as ** along with 5 people and 1 group stevanspringer AaronDarling usagi-kirin mingzhi CharlesM FAB-lab
  • Evidence for positive selection on the E2 gene of bovine viral diarrhoea virus type 1
    Virus Genes, Vol. 35, No. 3. (24 December 2007), pp. 629-634.
    by Fangqiang Tang, Chuyu Zhang
    posted to evolution paml positiveselection by Garamonfok on 2008-03-11 10:17:25 as **
  • Function and evolution of a gene family encoding odorant binding-like proteins in a social insect, the honey bee (Apis mellifera)
    Genome Res., Vol. 16, No. 11. (1 November 2006), pp. 1404-1413.
    by Sylvain Foret, Ryszard Maleszka
    posted to evolution hyphy positiveselection tools by Garamonfok on 2008-03-14 13:09:40 as **
  • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models.
    Mol Biol Evol, Vol. 17, No. 1. (January 2000), pp. 32-43.
    by Z Yang, R Nielsen
    posted to evolution paml positiveselection by Garamonfok on 2008-03-05 17:57:19 as ** along with 8 people and 1 group bjorns fernan hdopazo BioNica timflutre ankur_iitg RamuAnandakrishnan Ema BioinfoCIPF
  • Frequent False Detection of Positive Selection by the Likelihood Method with Branch-Site Models
    Mol Biol Evol, Vol. 21, No. 7. (1 July 2004), pp. 1332-1339.
    by Jianzhi Zhang
    posted to evolution paml positiveselection by Garamonfok on 2008-03-05 17:53:04 as ** along with 1 person and 1 group rvosa FAB-lab
  • The genomic rate of adaptive evolution
    Trends in Ecology & Evolution, Vol. 21, No. 10. (October 2006), pp. 569-575.
    by Adam Eyre-Walker
    posted to positiveselection mktest evolution adaptiveevolution by Garamonfok on 2008-02-19 13:06:16 as ***** along with 3 people and 3 groups stevanspringer aprasad dchughes FAB-lab G4ID Genetics-of-Gambling
  • Molecular signatures of natural selection.
    Annu Rev Genet, Vol. 39 (2005), pp. 197-218.
    by R Nielsen
    posted to positiveselection by dmc on 2008-03-07 14:02:05 as ** along with 8 people renewang operon bpb pradiptaray eckart_bindewald timflutre BioNica jasonflannick
  • Simultaneous inference of selection and population growth from patterns of variation in the human genome.
    Proc Natl Acad Sci U S A, Vol. 102, No. 22. (31 May 2005), pp. 7882-7887.
    by SH Williamson, R Hernandez, A Fledel-Alon, L Zhu, R Nielsen, CD Bustamante
    posted to positiveselection by dmc on 2008-03-07 11:36:08 as ** along with 1 person and 1 group balajis Durbin group
  • A Dirichlet process model for detecting positive selection in protein-coding DNA sequences.
    Proc Natl Acad Sci U S A, Vol. 103, No. 16. (18 April 2006), pp. 6263-6268.
    by JP Huelsenbeck, S Jain, SW Frost, SL Pond
    posted to positiveselection by dmc on 2008-03-07 13:52:41 as ** along with 2 people ejeffery kieran101
  • ITM2A is induced during thymocyte selection and T cell activation and causes downregulation of CD8 when overexpressed in CD4(+)CD8(+) double positive thymocytes.
    J Exp Med, Vol. 190, No. 2. (19 July 1999), pp. 217-228.
    by J Kirchner, MJ Bevan
    posted to positiveselection thymocyte by beccaf22 on 2005-10-13 18:30:43 as **
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