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Tag positive_selection [51 articles]

Recent papers classified by the tag positive_selection.
  • Approaches for identifying targets of positive selection
    Trends in Genetics, Vol. 23, No. 11. (November 2007), pp. 568-577.
    by Jeffrey D Jensen, Alex Wong, Charles F Aquadro
    posted to positive_selection by stajich on 2007-11-10 21:32:57 as ** along with 3 people and 2 groups dchughes candypmcg dmc EisenLab Durbin group
  • A Model of Directional Selection Applied to the Evolution of Drug Resistance in HIV-1
    Molecular Biology and Evolution, Vol. 24, No. 4. (April 2007), pp. 1025-1031.
    by Seoighe, Cathal, Ketwaroo, Farahnaz, Pillay, Visva, Scheffler, Konrad, Wood, Natasha, Duffet, Rodger, Zvelebil, Marketa, Martinson, Neil, Mcintyre, James, Morris, Lynn, Hide, Winston
    posted to drug_resistance hiv molecular_evolution positive_selection by stajich on 2007-11-26 18:48:57 as **
  • Positive selection on an acrosomal sperm protein, M7 lysin, in three species of the mussel genus Mytilus.
    Mol Biol Evol, Vol. 20, No. 2. (February 2003), pp. 200-207.
    by C Riginos, JH McDonald
    posted to molecular_evolution mytilus population_genetics positive_selection sexual_selection by stajich on 2007-08-27 04:01:14 as read along with 1 group FAB-lab
  • A Maximum Likelihood Method for Detecting Directional Evolution in Protein Sequences and its Application to Influenza A Virus.
    Molecular biology and evolution (29 May 2008)
    by Sergei L L Kosakovsky Pond, Art F Y F Poon, Andrew J J Leigh Brown, Simon D W D Frost
    posted to molecular_evolution positive_selection by stajich on 2008-06-01 13:47:44 as ** along with 3 people and 1 group pradiptaray zwang phoenixzxl Berkeley Mycology
  • Positive selection acting on splicing motifs reflects compensatory evolution
    Genome Res. (18 January 2008), gr.070268.107.
    by Shengdong Ke, Xiang H Zhang, Lawrence A Chasin
    posted to motif positive_selection splicing by stajich on 2008-04-10 22:27:19 as ** along with 4 people and 1 group operon bpcusack cjeans gjuggler Berkeley Mycology
  • Molecular Population Genetics and Evolution of Drosophila Meiosis Genes
    Genetics (3 November 2008), genetics.108.093807.
    by Jennifer A Anderson, William D Gilliland, Charles H Langley
    posted to positive_selection population_genetics meiosis evolution drosophila by stajich on 2008-11-04 05:52:02 as ** along with 1 person and 1 group druvus Berkeley Mycology
  • Positive directional selection in the proline-rich antigen (PRA) gene among the human pathogenic fungi Coccidioides immitis, C. posadasii and their closest relatives.
    Molecular biology and evolution, Vol. 21, No. 6. (June 2004), pp. 1134-1145.
    by H Johannesson, P Vidal, J Guarro, RA Herr, GT Cole, JW Taylor
    posted to coccidioides coccipaper positive_selection virulence_factor by stajich on 2008-04-19 21:37:31 as ** along with 1 group Berkeley Mycology
  • Evolutionary Switch and Genetic Convergence on rbcL following the Evolution of C4 Photosynthesis
    Mol Biol Evol, Vol. 25, No. 11. (1 November 2008), pp. 2361-2368.
    by Pascal-Antoine Christin, Nicolas Salamin, Muthama A Muasya, Eric H Roalson, Flavien Russier, Guillaume Besnard
    posted to positive_selection plants photosynthesis c4 by stajich on 2008-10-22 16:20:30 as ** along with 1 group Berkeley Mycology
  • Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in Drosophila.
    PLoS Genet, Vol. 1, No. 1. (July 2005), pp. 96-108.
    by D Vermaak, S Henikoff, HS Malik
    posted to positive_selection drosophila by stajich on 2007-02-12 05:26:17 as ** along with 2 people and 1 group stevanspringer RMGraze FAB-lab
  • Uncorrected nucleotide bias in mtDNA can mimic the effects of positive Darwinian selection.
    Molecular biology and evolution (8 October 2008)
    by Mihai Albu, Xiang Jia J Min, Donal Hickey, Brian Golding
    posted to positive_selection molecular_evolution by stajich on 2008-11-18 18:27:38 as ** along with 3 people and 1 group GustavoLacerda djkt nuin Berkeley Mycology
  • Genomic insights into positive selection
    Trends in Genetics, Vol. 22, No. 8. (August 2006), pp. 437-446.
    by Shameek Biswas, Joshua M Akey
    posted to positive_selection population_genomics population_genetics by stajich on 2007-02-11 23:50:02 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • On the Varied Pattern of Evolution of 2 Fungal Genomes: A Critique of Hughes and Friedman
    Molecular Biology and Evolution, Vol. 23, No. 12. (15 December 2006), pp. 2279-2282.
    by Yang, Ziheng
    posted to positive_selection molecular_evolution by stajich on 2007-01-18 01:09:37 as ****
  • Prevalence of positive selection among nearly neutral amino acid replacements in Drosophila.
    Proc Natl Acad Sci U S A (4 April 2007)
    by Stanley A A Sawyer, John Parsch, Zhi Zhang, Daniel L L Hartl
    posted to evolution positive_selection by ramensky on 2007-11-13 22:57:44 as ** along with 1 person and 1 group dpollard EisenLab
  • Natural selection on protein-coding genes in the human genome
    Nature, Vol. 437, No. 7062., pp. 1153-1157.
    by Carlos D Bustamante, Adi Fledel-Alon, Scott Williamson, Rasmus Nielsen, Melissa T Hubisz, Stephen Glanowski, David M Tanenbaum, Thomas J White, John J Sninsky, Ryan D Hernandez, Daniel Civello, Mark D Adams, Michele Cargill, Andrew G Clark
    posted to evolution positive_selection by ramensky on 2007-08-30 19:14:52 as ** along with 17 people and 5 groups renewang jo_davies stevanspringer operon jwortman aprasad dayjm balajis marcius dpollard hdopazo djkt JBEgwa01 Garamonfok iris42 dmc shoshin EisenLab FAB-lab BioinfoCIPF SGU-CIPF Durbin group
  • Positive and negative selection on the human genome.
    Genetics, Vol. 158, No. 3. (July 2001), pp. 1227-1234.
    by JC Fay, GJ Wyckoff, CI Wu
    posted to evolution positive_selection by ramensky on 2007-08-04 11:00:58 as ** along with 5 people and 1 group stevanspringer ankur_iitg shoshin friendpine skumagai FAB-lab
  • Comparisons of Site- and Haplotype-frequency Methods for Detecting Positive Selection.
    Mol Biol Evol (21 April 2007)
    by Kai Zeng, Shuhei Mano, Suhua Shi, Chung-I I Wu
    posted to evolution positive_selection by ramensky on 2007-08-04 10:55:27 as ** along with 2 people nosada17 candypmcg
  • Genomic scans for selective sweeps using SNP data.
    Genome Res, Vol. 15, No. 11. (November 2005), pp. 1566-1575.
    by R Nielsen, S Williamson, Y Kim, MJ Hubisz, AG Clark, C Bustamante
    posted to evolution positive_selection by ramensky on 2007-08-30 19:02:26 as ** along with 5 people and 3 groups renewang stevanspringer balajis ashandanj dmc Bioinformatics FAB-lab Durbin group
  • Hitchhiking under positive Darwinian selection.
    Genetics, Vol. 155, No. 3. (July 2000), pp. 1405-1413.
    by JC Fay, CI Wu
    posted to evolution positive_selection by ramensky on 2007-08-20 02:35:35 as ** along with 2 people and 1 group operon dmc Durbin group
  • Statistical Tests for Detecting Positive Selection by Utilizing High-Frequency Variants
    Genetics, Vol. 174, No. 3. (1 November 2006), pp. 1431-1439.
    by Kai Zeng, Yun-Xin Fu, Suhua Shi, Chung-I Wu
    posted to evolution positive_selection by ramensky on 2007-08-04 11:01:41 as ** along with 3 people and 2 groups stevanspringer operon dmc FAB-lab Durbin group
  • Recent and ongoing selection in the human genome
    Nat Rev Genet, Vol. 8, No. 11. (November 2007), pp. 857-868.
    by Rasmus Nielsen, Ines Hellmann, Melissa Hubisz, Carlos Bustamante, Andrew G Clark
    posted to positive_selection by ramensky on 2008-03-08 23:32:34 as ** along with 9 people and 1 group renewang kndiaye dchughes Garamonfok candypmcg ryanraaum bpcusack lh3 gjuggler Durbin group
  • Positive Natural Selection in the Human Lineage
    Science, Vol. 312, No. 5780. (16 June 2006), pp. 1614-1620.
    by PC Sabeti, SF Schaffner, B Fry, J Lohmueller, P Varilly, O Shamovsky, A Palma, TS Mikkelsen, D Altshuler, ES Lander
    posted to evolution positive_selection by ramensky on 2007-08-20 02:43:24 as read along with 9 people and 4 groups kndiaye gjuggler dchughes cmm larios hdopazo djkt iris42 jasonflannick FAB-lab G4ID BioinfoCIPF Genetics-of-Gambling
  • Genome-wide detection and characterization of positive selection in human populations
    Nature, Vol. 449, No. 7164. (18 October 2007), pp. 913-918.
    by Pardis C Sabeti, Patrick Varilly, Ben Fry, Jason Lohmueller, Elizabeth Hostetter, Chris Cotsapas, Xiaohui Xie, Elizabeth H Byrne, Steven A Mccarroll, Rachelle Gaudet, Stephen F Schaffner, Eric S Lander
    posted to evolution haplotypes positive_selection by ramensky on 2007-11-29 00:03:49 as ** along with 10 people renewang xianjun misonneh brian dchughes djkt hms ryanraaum iris42 jasonflannick
  • Gene Diversity Patterns at 10 X-Chromosomal Loci in Humans and Chimpanzees
    Mol Biol Evol, Vol. 20, No. 8. (1 August 2003), pp. 1281-1289.
    by Takashi Kitano, Carsten Schwarz, Birgit Nickel, Svante Paabo
    posted to acceleration brain positive_selection x_chromosome by hawksjohnd on 2007-01-05 06:14:58 as *****
  • Heterogeneous Patterns of Variation Among Multiple Human X-Linked Loci: The Possible Role of Diversity-Reducing Selection in Non-Africans
    Genetics, Vol. 167, No. 4. (1 August 2004), pp. 1841-1853.
    by Michael F Hammer, Daniel Garrigan, Elizabeth Wood, Jason A Wilder, Zahra Mobasher, Abigail Bigham, James G Krenz, Michael W Nachman
    posted to hammer out_of_africa positive_selection x_chromosome by hawksjohnd on 2007-01-05 06:20:53 as **
  • How reliable are empirical genomic scans for selective sweeps?
    Genome Res, Vol. 16, No. 6. (June 2006), pp. 702-712.
    by KM Teshima, G Coop, M Przeworski
    posted to ascertainment linkage positive_selection recombination standing_variation by hawksjohnd on 2007-01-05 06:27:09 as ** along with 3 people and 2 groups renewang indigoviolet dmc EisenLab Durbin group
  • Intrinsically unstructured proteins and their functions
    Nature Reviews Molecular Cell Biology, Vol. 6, No. 3. (01 March 2005), pp. 197-208.
    by Jane J Dyson, Peter E Wright
    posted to positive_selection protein_evolution read_next by penka to the group Nie on 2006-06-04 03:11:53 as ***** along with 2 people chad_davis cactus
  • Positive selection at sites of multiple amino acid replacements since rat-mouse divergence
    Nature, Vol. 429, No. 6991. (3 June 2004), pp. 558-562.
    by Georgii A Bazykin, Fyodor A Kondrashov, Aleksey Y Ogurtsov, Shamil Sunyaev, Alexey S Kondrashov
    posted to aa mouse positive_selection rat by penka to the group Nie on 2006-02-03 08:26:55 as ** along with 1 person youdon
  • Evolutionary genomics: Detecting selection needs comparative data
    Nature, Vol. 433, No. 7023. (20 January 2005), E6.
    by Rasmus Nielsen, Melissa J Hubisz
    posted to bio113paper methods positive_selection by penka to the group Nie on 2006-02-03 08:27:54 as ** along with 1 person tsackton
  • Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome
    Genome Res. (7 November 2007), gr.6691007.
    by Peter Andolfatto
    posted to drosophila hitchhiking positive_selection by dpollard to the group EisenLab on 2008-02-13 06:38:24 as *** along with 4 people djkt usagi-kirin mimulus_99 emptyhb
  • Positive selection acting on a surface membrane protein of the plant-pathogenic phytoplasmas.
    J Bacteriol, Vol. 188, No. 9. (May 2006), pp. 3424-3428.
    by S Kakizawa, K Oshima, HY Jung, S Suzuki, H Nishigawa, R Arashida, S Miyata, M Ugaki, H Kishino, S Namba
    posted to host-parasite positive_selection by ejeffery on 2006-05-04 01:59:53 as ** along with 2 people operon BioNica
  • Being positive about selection.
    PLoS Biol, Vol. 4, No. 3. (March 2006)
    by C MacCallum, E Hill
    posted to h_sapiens positive_selection by ejeffery on 2006-05-04 02:28:25 as ** along with 5 people and 1 group stevanspringer operon balajis BioNica JBEgwa01 FAB-lab
  • Rate of molecular evolution of the seminal protein gene SEMG2 correlates with levels of female promiscuity
    Nature Genetics, Vol. 36, No. 12. (07 November 2004), 1326.
    by Steve Dorus, Patrick D Evans, Gerald J Wyckoff, Sun S Choi, Bruce T Lahn
    posted to positive_selection primate reproductive_proteins sexual_selection by ejeffery on 2006-05-11 00:56:11 as read along with 5 people and 1 group stevanspringer jshapiro balajis usagi-kirin bpcusack FAB-lab
  • On the logic of positive selection
    Immunology, Vol. 117, No. 4. (April 2006), pp. 452-453.
    by Melvin Cohn
    posted to positive_selection by ejeffery on 2006-05-04 02:23:23 as ****
  • Positive selection on gene expression in the human brain.
    Curr Biol (14 April 2006)
    by Philipp Khaitovich, Kun Tang, Henriette Franz, Janet Kelso, Ines Hellmann, Wolfgang Enard, Michael Lachmann, Svante Pääbo
    posted to brain h_sapiens positive_selection by ejeffery on 2006-05-04 02:08:18 as ** along with 1 person and 1 group cmm FAB-lab
  • Mutational hotspots in the TP53 gene and, possibly, other tumor suppressors evolve by positive selection.
    Biol Direct, Vol. 1, No. 1. (2006)
    by GV Glazko, VN Babenko, EV Koonin, IB Rogozin
    posted to cancer positive_selection by ejeffery on 2006-05-04 02:20:51 as **
  • Accelerated evolution of nervous system genes in the origin of Homo sapiens.
    Cell, Vol. 119, No. 7. (29 December 2004), pp. 1027-1040.
    by S Dorus, EJ Vallender, PD Evans, JR Anderson, SL Gilbert, M Mahowald, GJ Wyckoff, CM Malcom, BT Lahn
    posted to brain h_sapiens positive_selection primate by ejeffery on 2006-05-26 21:38:13 as ***** along with 5 people and 1 group rvosa cmm djkt shoshin chrys FAB-lab
  • Rapid evolution and gene-specific patterns of selection for three genes of spermatogenesis in Drosophila.
    Mol Biol Evol, Vol. 23, No. 3. (March 2006), pp. 655-662.
    by A Civetta, SA Rajakumar, B Brouwers, JP Bacik
    posted to drosophila positive_selection spermatogenesis by ejeffery on 2006-05-05 01:07:48 as **
  • Natural Selection Drives Extremely Rapid Evolution in Antiviral RNAi Genes.
    Curr Biol, Vol. 16, No. 6. (21 March 2006), pp. 580-585.
    by DJ Obbard, FM Jiggins, DL Halligan, TJ Little
    posted to host-parasite positive_selection by ejeffery on 2006-05-04 02:21:38 as ** along with 3 people and 1 group shuzhens dpollard tabu EisenLab
  • The signature of positive selection on standing genetic variation.
    Evolution Int J Org Evolution, Vol. 59, No. 11. (November 2005), pp. 2312-2323.
    by M Przeworski, G Coop, JD Wall
    posted to detecting_positive_selection molecular_evolution positive_selection by ejeffery on 2006-05-05 22:54:30 as *** along with 1 person and 1 group dmc Durbin group
  • Hearing silence: non-neutral evolution at synonymous sites in mammals
    Nature Reviews Genetics, Vol. 7, No. 2., pp. 98-108.
    by JV Chamary, Joanna L Parmley, Laurence D Hurst
    posted to alternative_splicing neutral_theory positive_selection by ejeffery on 2006-05-05 00:59:17 as **** along with 5 people gpalidwor i000 massivemayhem BioNica dgront
  • Positive selection can create false hotspots of recombination.
    Genetics, Vol. 172, No. 3. (March 2006), pp. 2011-2014.
    by FA Reed, SA Tishkoff
    posted to positive_selection recombination by ejeffery on 2006-05-05 01:14:50 as ** along with 1 person balicea
  • Adaptive evolution of multicolored fluorescent proteins in reef-building corals.
    J Mol Evol, Vol. 62, No. 3. (March 2006), pp. 332-339.
    by SF Field, MY Bulina, IV Kelmanson, JP Bielawski, MV Matz
    posted to detecting_positive_selection positive_selection by ejeffery on 2006-05-05 00:21:43 as *
  • Role of positive selection in the retention of duplicate genes in mammalian genomes
    PNAS, Vol. 103, No. 7. (14 February 2006), pp. 2232-2236.
    by Shin-Han Shiu, Jake K Byrnes, Runsun Pan, Peng Zhang, Wen-Hsiung Li
    posted to gene_duplication molecular_evolution positive_selection by ejeffery on 2006-05-04 18:38:04 as ** along with 2 people and 1 group stevanspringer cmm FAB-lab
  • Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway.
    Nat Genet (1 January 2006)
    by Yoko Kuroki, Atsushi Toyoda, Hideki Noguchi, Todd D D Taylor, Takehiko Itoh, Dae-Soo S Kim, Dae-Won W Kim, Sang-Haeng H Choi, Il-Chul C Kim, Han Ho H Choi, Yong Sung S Kim, Yoko Satta, Naruya Saitou, Tomoyuki Yamada, Shinichi Morishita, Masahira Hattori, Yoshiyuki Sakaki, Hong-Seog S Park, Asao Fujiyama
    posted to h_sapiens positive_selection y_chromosome by ejeffery on 2006-05-05 22:53:20 as *** along with 4 people and 2 groups great_apes xwbcn cmm usagi-kirin biodiversity_conservation FAB-lab
  • A Map of Recent Positive Selection in the Human Genome.
    PLoS Biol, Vol. 4, No. 3. (7 March 2006)
    by Benjamin F F Voight, Sridhar Kudaravalli, Xiaoquan Wen, Jonathan K K Pritchard
    posted to h_sapiens hapmap positive_selection by ejeffery on 2006-05-05 00:24:39 as ***** along with 22 people and 7 groups renewang diamantis stevanspringer kentsis bpb balajis indigoviolet pradiptaray madhadron breden tiago larios ashandanj hdopazo livingthingdan djkt mbeautru grahamc suizan shoshin iris42 dmc Bioinformatics EisenLab FAB-lab SFUAntibodyResearch BioinfoCIPF livingthing Durbin group
  • Positive Selection on Nucleotide Substitutions and Indels in Accessory Gland Proteins of the Drosophila pseudoobscura Subgroup.
    J Mol Evol (28 April 2006)
    by Sheri D Schully, Michael E Hellberg
    posted to acp positive_selection by ejeffery on 2006-05-04 01:53:39 as **
  • Global landscape of recent inferred Darwinian selection for Homo sapiens
    PNAS, Vol. 103, No. 1. (3 January 2006), pp. 135-140.
    by Eric T Wang, Greg Kodama, Pierre Baldi, Robert K Moyzis
    posted to h_sapiens hapmap positive_selection by ejeffery on 2006-05-05 01:08:42 as ** along with 11 people and 3 groups renewang cgreal balajis balicea dchughes madhadron larios JBEgwa01 shoshin ryanraaum qwermish CGREL G4ID Genetics-of-Gambling
  • Fast rate of evolution in alternatively spliced coding regions of mammalian genes.
    BMC Genomics, Vol. 7, No. 1. (18 April 2006)
    by Ekaterina O Ermakova, Ramil N Nurtdinov, Mikhail S Gelfand
    posted to alternative_splicing positive_selection by ejeffery on 2006-05-04 01:59:12 as ** along with 1 person marcio
  • A second generation human haplotype map of over 3.1 million SNPs
    Nature, Vol. 449, No. 7164. (18 October 2007), pp. 851-861.
    posted to positive_selection homo hapmap genome by diamantis on 2008-11-26 02:13:21 as ** along with 14 people and 2 groups daforerog Hans45 misonneh gowtham psique guhjy dchughes djkt lp2 ryanraaum xingxu jasonflannick skumagai mfm11 Bioinformatics parkinson's disease references
  • Positive Selection in the Human Genome: From Genome Scans to Biological Significance
    Annual Review of Genomics and Human Genetics, Vol. 9, No. 1. (2008), pp. 143-160.
    by Joanna L Kelley, Willie J Swanson
    posted to selection positive_selection human homo genome_scan by diamantis on 2008-11-23 03:27:04 as ** along with 3 people pradiptaray gjuggler zwang
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