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Tag pore [59 articles]

Recent papers classified by the tag pore.
  • The nuclear export receptor Xpo1/Crm1 is physically and functionally linked to the spindle pole body in budding yeast
    Mol. Cell. Biol. (23 June 2008), MCB.02043-07.
    by Anja Neuber, Jacqueline Franke, Angelika Wittstruck, Gabriel Schlenstedt, Thomas Sommer, Katrin Stade
    posted to xpo1crm1 spc72 spb pore nuclear complex by XHeiligenstein on 2008-06-27 10:55:58 as ***
  • PEROXISOMAL MATRIX PROTEIN IMPORT: THE TRANSIENT PORE MODEL
    Nat Rev Mol Cell Biol, Vol. 6, No. 9. (2005), pp. 738-742.
    by Ralf Erdmann, Wolfgang Schliebs
    posted to peroxisome pore by viktor21614 on 2007-07-30 20:44:07 as **
  • Intercellular transfer mediated by tunneling nanotubes.
    Current opinion in cell biology (2 May 2008)
    by Hans-Hermann H Gerdes, Raquel Negrão N Carvalho
    posted to cell communication nanotube pore by sebastien_vigneau on 2008-05-08 01:25:50 as **
  • FG-rich repeats of nuclear pore proteins form a three-dimensional meshwork with hydrogel-like properties.
    Science, Vol. 314, No. 5800. (3 November 2006), pp. 815-817.
    by S Frey, RP Richter, D Görlich
    posted to nuclear pore proteins by pdelosri on 2006-11-05 10:40:54 as **** along with 1 group EPFL_SB_ITP_LBS
  • Materials science. Polymers in the pore.
    Science, Vol. 314, No. 5800. (3 November 2006), pp. 766-767.
    by M Elbaum
    posted to complex nuclear pore by pdelosri on 2006-11-05 10:42:01 as ** along with 1 group EPFL_SB_ITP_LBS
  • Cell biology. Nuclear pore complex models gel.
    Science, Vol. 314, No. 5800. (3 November 2006), pp. 766-767.
    by B Burke
    posted to complex nuclear pore by pdelosri on 2006-11-05 10:43:37 as ** along with 1 group EPFL_SB_ITP_LBS
  • Reversible Sheet - Turn Conformational Change of a Cell-Penetrating Peptide in Lipid Bilayers Studied by Solid-State NMR
    Journal of Molecular Biology, Vol. In Press, Accepted Manuscript
    by Yongchao Su, Rajeswari Mani, Tim Doherty, Alan J Waring, Mei Hong
    posted to membrane peptide pore structure by paulschlesinger on 2008-06-13 01:09:55 as **
  • Lipid Bilayer Curvature and Pore Formation Induced by Charged Linear Polymers and Dendrimers: The Effect of Molecular Shape
    J. Phys. Chem. B (4 September 2008)
    by Hwankyu Lee, Ronald G Larson
    posted to simulation pore membrane lee08pdf curvature by paulschlesinger on 2008-09-05 01:09:36 as ** along with 1 person agrossfield
  • Pore formation induced by an antimicrobial peptide: electrostatic effects
    Biophys. J. (26 September 2008), biophysj.108.136655.
    by Frantz Jean-Francois, Juan Elezgaray, Pascal Berson, Pierre Vacher, Erick J Dufourc
    posted to pore peptide jeanf08pdf formation antimicrobial by paulschlesinger on 2008-09-30 02:04:04 as **
  • Finding and characterizing tunnels in macromolecules with application to ion channels and pores
    Biophys. J. (10 October 2008), biophysj.108.135970.
    by Ryan G Coleman, Kim A Sharp
    posted to protein pore identification colema08pdf by paulschlesinger on 2008-10-12 01:59:00 as ** along with 1 person and 1 group barry structural_bioinformatics
  • A Secondary Gate As a Mechanism for Inhibition of the M2 Proton Channel by Amantadine
    J. Phys. Chem. B (14 May 2008)
    by Myunggi Yi, Timothy A Cross, Huan-Xiang Zhou
    posted to amantadine block influenza pore proton by paulschlesinger on 2008-05-20 01:20:43 as **
  • Kinetics, Statistics, and Energetics of Lipid Membrane Electroporation Studied by Molecular Dynamics Simulations
    Biophys. J. (9 May 2008), biophysj.108.129437.
    by Rainer A Bockmann, Bert L de Groot, Sergej Kakorin, Eberhard Neumann, Helmut Grubmuller
    posted to electroporation md membrane pore simulation by paulschlesinger on 2008-05-13 00:02:06 as **
  • Structure of transmembrane pore induced by Bax-derived peptide: Evidence for lipidic pores.
    Proceedings of the National Academy of Sciences of the United States of America (5 November 2008)
    by Shuo Qian, Wangchen Wang, Lin Yang, Huey W W Huang
    posted to volume transmembrane qian08pdf pore peptide membrane bax area by paulschlesinger on 2008-11-07 20:11:42 as **
  • Temperature Dependence of Fusion Kinetics and Fusion Pores in Ca2+-triggered Exocytosis from PC12 Cells
    J. Gen. Physiol., Vol. 131, No. 2. (28 January 2008), pp. 117-124.
    by Zhen Zhang, Meyer B Jackson
    posted to dependence fusion membrane pore temperature by paulschlesinger on 2008-02-19 00:31:07 as **
  • The TpsB Translocator HMW1B of Haemophilus influenzae Forms a Large Conductance Channel
    J. Biol. Chem., Vol. 283, No. 23. (6 June 2008), pp. 15771-15778.
    by Guillaume Duret, Michal Szymanski, Kyoung-Jae Choi, Hye-Jeong Yeo, Anne H Delcour
    posted to channel forming pore protein by paulschlesinger on 2008-05-31 00:45:42 as **
  • A Chaotic Pore Model of Polypeptide Antibiotic Action
    Biophys. J., Vol. 94, No. 5. (1 March 2008), pp. 1549-1550.
    by Paul H Axelsen
    posted to cercropin chaotic model pore by paulschlesinger on 2008-07-23 17:49:03 as **
  • Coarse-grained simulation studies of peptide-induced pore formation
    Biophys. J. (18 July 2008), biophysj.108.131300.
    by Gregoria Illya, Markus Deserno
    posted to simulation pore peptide mechanisn illya08pdf formation analysis by paulschlesinger on 2008-08-12 23:12:18 as ** along with 1 person agrossfield
  • Solution Structure of the Integral Human Membrane Protein VDAC-1 in Detergent Micelles
    Science, Vol. 321, No. 5893. (29 August 2008), pp. 1206-1210.
    by Sebastian Hiller, Robert G Garces, Thomas J Malia, Vladislav Y Orekhov, Marco Colombini, Gerhard Wagner
    posted to micelle pore structure vdac by paulschlesinger on 2008-08-29 01:06:45 as ** along with 1 person pansapiens
  • Oligomerization of membrane-bound diphtheria toxin (CRM197) facilitates a transition to the open form and deep insertion
    Biophys. J. (30 November 2007), biophysj.107.113498.
    by Michael Kent, Hyun Yim, Jaclyn Murton, Sushil Satija, Jaroslaw Majewski, Ivan Kuzmenko
    posted to toxin pore membrane insertion binding by paulschlesinger on 2007-12-04 23:49:03 as **
  • Sizing the Bacillus anthracis PA63 Channel with Nonelectrolyte Poly(Ethylene Glycols)
    Biophys. J., Vol. 95, No. 3. (1 August 2008), pp. 1157-1164.
    by Brian J Nablo, Kelly M Halverson, Joseph W Robertson, Tam L Nguyen, Rekha G Panchal, Rick Gussio, Sina Bavari, Oleg V Krasilnikov, John J Kasianowicz
    posted to block channel peg pore size by paulschlesinger on 2008-07-23 01:09:22 as **
  • Problem Solved* (*sort of)
    Science, Vol. 321, No. 5890. (8 August 2008), pp. 784-786.
    by Robert F Service
    posted to folding nuclear pore problem protein by paulschlesinger on 2008-08-09 01:10:50 as ** along with 2 people dgront reyez
  • Mechanism and kinetics of pore formation in membranes by water-soluble amphipathic peptides
    Proceedings of the National Academy of Sciences, Vol. 105, No. 13. (1 April 2008), pp. 5087-5092.
    by Ming-Tao Lee, Wei-Chin Hung, Fang-Yu Chen, Huey W Huang
    posted to amphipatic formation peptides pore by paulschlesinger on 2008-04-16 20:12:11 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Simulations of skin barrier function: Free energies of hydrophobic and hydrophilic transmembrane pores in ceramide bilayers
    Biophys. J. (15 August 2008), biophysj.108.138545.
    by Rebecca Notman, Jamshed Anwar, WJ Briels, Massimo G Noro, Wouter K den Otter
    posted to activation energy facilitators membrane pore by paulschlesinger on 2008-08-17 01:35:24 as **
  • Infrared Spectroscopy Study on the Conformational Changes Leading to Pore Formation of the Toxin Sticholysin II
    Biophys. J., Vol. 93, No. 9. (1 November 2007), pp. 3191-3201.
    by Jorge Alegre-Cebollada, Martinez, Jose G Gavilanes, Erik Goormaghtigh
    posted to membrane pore toxin by paulschlesinger on 2007-10-16 02:45:29 as **
  • Peptide Aggregation and Pore Formation in a Lipid Bilayer - A Combined Coarse Grained and All Atom Molecular Dynamics Study
    Biophys. J. (1 August 2008), biophysj.108.133330.
    by Lea Thogersen, Birgit Schiott, Thomas Vosegaard, Niels C Nielsen, Emad Tajkhorshid
    posted to aggregation formation membrane pore thorge08pdf by paulschlesinger on 2008-08-03 02:44:26 as **
  • Poliovirus 2B insertion into lipid monolayers and pore formation in vesicles modulated by anionic phospholipids
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. In Press, Accepted Manuscript
    by Aitziber Agirre, Maier Lorizate, Shlomo Nir, José L Nieva
    posted to foramtion insertion membrane peptides pore by paulschlesinger on 2008-06-27 01:09:45 as **
  • Pore Structure, Thinning Effect, and Lateral Diffusive Dynamics of Oriented Lipid Membranes Interacting with Antimicrobial Peptide Protegrin-1: 31P and 2H Solid-State NMR Study
    J. Phys. Chem. B (14 August 2008)
    by Sungsool Wi, Chul Kim
    posted to diffusion lateral membrane pore thinning wi08pd by paulschlesinger on 2008-08-15 01:21:25 as *****
  • The Antimicrobial Peptide Gramicidin S Permeabilizes Phospholipid Bilayer Membranes Without Forming Discrete Ion Channels
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. In Press, Accepted Manuscript
    by Md Ashrafuzzaman, OS Andersen, RN Mcelhaney
    posted to pore membrane gramicidin channel ashraf08pdf by paulschlesinger on 2008-09-09 22:44:07 as **
  • Influence of Polymer-Pore Interactions on Translocation
    Physical Review Letters, Vol. 99, No. 14. (2007)
    by Kaifu Luo, Tapio A Nissila, See C Ying, Aniket Bhattacharya
    posted to polymer pore transitions by paulschlesinger on 2007-10-23 01:51:19 as ** along with 2 people choonpeng pawelp
  • Chemically Induced Phospholipid Translocation Across Biological Membranes
    Langmuir (5 August 2008)
    by Andrey A Gurtovenko, Olajide I Onike, Jamshed Anwar
    posted to amphiphiles flip flop forming lipid pore by paulschlesinger on 2008-08-09 00:33:57 as **
  • Changes in specific lipids regulate BAX-induced mitochondrial permeability transition
    FEBS Journal, Vol. 274, No. 24. (December 2007), pp. 6500-6510.
    by Martinez-Abundis, , Garcia, , Correa, , Franco, , Zazueta,
    posted to cholesterol cyclodextrin mitochondria permeability pore transition by paulschlesinger on 2008-06-09 20:09:45 as **
  • On the opening of an insensitive cyclosporin A non-specific pore by phenylarsine plus mersalyl.
    Cell biochemistry and biophysics, Vol. 49, No. 2. (2007), pp. 84-90.
    by N García, E Martínez-Abundis, N Pavón, E Chávez
    posted to cyclosporin mitochondrial pore by paulschlesinger on 2008-06-09 20:07:31 as **
  • Biophysical characterization of Vpu from HIV-1 suggests a channel-pore dualism
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by T Mehnert, A Routh, PJ Judge, YH Lam, D Fischer, A Watts, WB Fischer
    posted to channel pore simultaion vpu by paulschlesinger on 2007-10-23 01:46:14 as ****
  • Excursion of a single polypeptide into a protein pore: simple physics, but complicated biology
    European Biophysics Journal
    by Mohammad Mohammad, Liviu Movileanu
    posted to dynamics peptide pore protein by paulschlesinger on 2008-03-30 02:29:58 as **
  • Structure of the Alamethicin Pore Reconstructed by X-ray Diffraction Analysis
    Biophys. J. (16 January 2008), biophysj.107.126474.
    by Shuo Qian, Wangchen Wang, Lin Yang, Huey W Huang
    posted to membranes peptide pore by paulschlesinger on 2008-01-24 20:42:07 as ** along with 1 person agrossfield
  • Amino Acid Residues Involved in Membrane Insertion and Pore Formation of Clostridium botulinum C2 Toxin
    Biochemistry, Vol. 47, No. 32. (12 August 2008), pp. 8406-8413.
    by Alexander E Lang, Tobias Neumeyer, Jianjun Sun, John R Collier, Roland Benz, Klaus Aktories
    posted to foramtion membrane mutation pore toxin by paulschlesinger on 2008-08-10 03:07:35 as **
  • Determination of the Line Tension of Giant Vesicles from Pore-Closing Dynamics
    J. Phys. Chem. B (27 May 2008)
    by Narayanan Srividya, Subra Muralidharan
    posted to kinetics line pore srivid08pdf tension by paulschlesinger on 2008-05-27 22:32:17 as **
  • Identification of the Pore-lining Residues of the BM2 Ion Channel Protein of Influenza B Virus
    J. Biol. Chem., Vol. 283, No. 23. (6 June 2008), pp. 15921-15931.
    by Chunlong Ma, Cinque S Soto, Yuki Ohigashi, Albert Taylor, Vasilios Bournas, Brett Glawe, Maria K Udo, William F Degrado, Robert A Lamb, Lawrence H Pinto
    posted to channel characterization influenza pore by paulschlesinger on 2008-05-31 00:49:18 as **
  • Coarse-Grained Simulations of the Membrane-Active Antimicrobial Peptide Maculatin 1.1
    Biophys. J. (18 July 2008), biophysj.108.128686.
    by Peter J Bond, Daniel L Parton, James F Clark, Mark S Sansom
    posted to bond08pdf disruption formation membrane peptide pore by paulschlesinger on 2008-08-12 23:23:31 as ** along with 2 people mikaellund agrossfield
  • Probing the pH-Dependent Prepore to Pore Transition of Bacillus anthracis Protective Antigen with Differential Oxidative Protein Footprinting
    Biochemistry (12 September 2008)
    by James G Smedley, Joshua S Sharp, Jeffrey F Kuhn, Kenneth B Tomer
    posted to smedl08pdf protective pore ph antigen activation by paulschlesinger on 2008-09-13 02:01:27 as **
  • The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating.
    Proceedings of the National Academy of Sciences of the United States of America (6 November 2008)
    by Rachna Ujwal, Duilio Cascio, Jacques-Philippe P Colletier, Salem Faham, Jun Zhang, Ligia Toro, Peipei Ping, Jeff Abramson
    posted to vdac structure protein porin pore mitochondrial mitochondria crystallography beta_barrel by pansapiens on 2008-11-09 23:45:16 as ***
  • Energetics of Pore Formation Induced by Membrane Active Peptides
    Biochemistry, Vol. 43, No. 12. (30 March 2004), pp. 3590-3599.
    by MT Lee, FY Chen, HW Huang
    posted to antimicrobialpeptide pore by loison on 2006-11-29 12:03:18 as **
  • Structure and Dynamics of Model Pore Insertion into a Membrane
    Biophys. J., Vol. 88, No. 5. (1 May 2005), pp. 3083-3094.
    by Carlos F Lopez, Steve O Nielsen, Bernd Ensing, Preston B Moore, Michael L Klein
    posted to coarse-grained pore simulation theory by loison on 2006-11-28 11:16:51 as **** along with 1 person softsimu
  • Lipid Bilayer Perturbations around a Transmembrane Nanotube: A Coarse Grain Molecular Dynamics Study
    Biophys. J., Vol. 88, No. 6. (1 June 2005), pp. 3822-3828.
    by Steve O Nielsen, Bernd Ensing, Vanessa Ortiz, Preston B Moore, Michael L Klein
    posted to coarse-grained pore simulation theory by loison on 2006-11-28 12:49:31 as ** along with 2 people Marine dimka
  • Stability of lipid bilayers and red blood cell membranes
    Physics Letters A, Vol. 53, No. 3. (16 June 1975), pp. 193-194.
    by JD Litster
    posted to theory pore bilayer by loison on 2007-01-11 14:12:05 as **
  • Interactions between amino acid side chains in cylindrical hydrophobic nanopores with applications to peptide stability
    Proceedings of the National Academy of Sciences (12 November 2008)
    by S Vaitheeswaran, D Thirumalai
    posted to pore by kshundyak on 2008-11-13 10:24:12 as **
  • HOLE: a program for the analysis of the pore dimensions of ion channel structural models.
    J Mol Graph, Vol. 14, No. 6. (December 1996)
    by OS Smart, JG Neduvelil, X Wang, BA Wallace, MS Sansom
    posted to cavities pore structural_bioinformatics by jwm on 2006-10-17 15:48:00 as ** along with 2 groups Radiation_Damage Stressosome
  • Fabrication and characterization of poly(propylene fumarate) scaffolds with controlled pore structures using 3-dimensional printing and injection molding.
    Tissue Eng, Vol. 12, No. 10. (October 2006), pp. 2801-2811.
    by KW Lee, S Wang, L Lu, E Jabbari, BL Currier, MJ Yaszemski
    posted to engineering polymers pore scaffold tissue by jorn79 on 2007-11-11 22:41:17 as **
  • Dual models of pore spaces
    Advances in Water Resources, Vol. 30, No. 2. (February 2007), pp. 227-248.
    by Roland Glantz, Markus Hilpert
    posted to bio computation pore by itmeson on 2007-09-13 22:46:37 as **
  • Extraction of physically realistic pore network properties from three-dimensional synchrotron X-ray microtomography images of unconsolidated porous media systems
    Journal of Hydrology, Vol. 300, No. 1-4. (10 January 2005), pp. 44-64.
    by RI Al-Raoush, CS Willson
    posted to bio computation pore by itmeson on 2007-09-13 22:18:58 as **
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