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Tag popgen [134 articles]

Recent papers classified by the tag popgen.
  • European Population Substructure: Clustering of Northern and Southern Populations
    PLoS Genetics, Vol. 2, No. 9. (1 September 2006), e143.
    by Michael F Seldin, Russell Shigeta, Pablo Villoslada, Carlo Selmi, Jaakko Tuomilehto, Gabriel Silva, John W Belmont, Lars Klareskog, Peter K Gregersen
    posted to popgen by vplagnol on 2007-01-11 03:38:04 as *****
  • Principal components analysis corrects for stratification in genome-wide association studies
    Nature Genetics, Vol. 38, No. 8. (23 July 2006), pp. 904-909.
    by Alkes L Price, Nick J Patterson, Robert M Plenge, Michael E Weinblatt, Nancy A Shadick, David Reich
    posted to popgen structure wtccc_class by vplagnol on 2008-02-21 17:32:27 as ** along with 7 people jyuh sriram_s qmwwallace ryanraaum dalexander caseybrown StatAnika
  • Two-Locus Sampling Distributions and Their Application
    Genetics, Vol. 159, No. 4. (1 December 2001), pp. 1805-1817.
    by Richard R Hudson
    posted to ld popgen by vplagnol on 2006-11-24 11:10:56 as **
  • Population Structure and Eigenanalysis.
    PLoS Genet, Vol. 2, No. 12. (22 December 2006)
    by Nick Patterson, Alkes L L Price, David Reich
    posted to popgen wtccc_class by vplagnol on 2007-05-18 16:21:21 as ** along with 2 people theseuskf caseybrown
  • Generating samples under a Wright-Fisher neutral model of genetic variation
    Bioinformatics, Vol. 18, No. 2. (1 February 2002), pp. 337-338.
    by Richard R Hudson
    posted to popgen by vplagnol on 2006-12-13 14:55:30 as ** along with 3 people jmeppley djkt ryanraaum
  • Sequencing and analysis of Neanderthal genomic DNA.
    Science, Vol. 314, No. 5802. (17 November 2006), pp. 1113-1118.
    by JP Noonan, G Coop, S Kudaravalli, D Smith, J Krause, J Alessi, F Chen, D Platt, S Pääbo, JK Pritchard, EM Rubin
    posted to popgen neanderthal by vplagnol on 2007-01-14 13:58:02 as ** along with 9 people and 1 group kaspermunch Archaeogenetics theseuskf biblio24 Mochimasa ibuch ryanraaum hpaces myourshaw Bioinformatics
  • Possible Ancestral Structure in Human Populations
    PLoS Genetics, Vol. 2, No. 7. (1 July 2006), e105.
    by Vincent Plagnol, Jeffrey D Wall
    posted to popgen neanderthal by vplagnol on 2006-12-13 14:43:52 as ** along with 1 person wijson
  • A worldwide survey of haplotype variation and linkage disequilibrium in the human genome
    Nature Genetics, Vol. 38, No. 11. (22 October 2006), pp. 1251-1260.
    by Donald F Conrad, Mattias Jakobsson, Graham Coop, Xiaoquan Wen, Jeffrey D Wall, Noah A Rosenberg, Jonathan K Pritchard
    posted to popgen by vplagnol on 2007-01-06 15:59:05 as ***** along with 3 people ramensky jasonbobe ryanraaum
  • An Arabidopsis Example of Association Mapping in Structured Samples
    PLoS Genetics, Vol. preprint, No. 2006. (1 November 2006), e4.eor.
    by Keyan Zhao, Maria J Aranzana, Sung Kim, Clare Lister, Chikako Shindo, Chunlao Tang, Christopher Toomajian, Honggang Zheng, Caroline Dean, Paul Marjoram, Magnus Nordborg
    posted to arabidopsis association popgen by vplagnol on 2007-01-06 14:24:41 as *****
  • Possible Ancestral Structure in Human Populations
    PLoS Genetics, Vol. 2, No. 7. (1 July 2006), e105.
    by Vincent Plagnol, Jeffrey D Wall
    posted to ld popgen by vplagnol on 2007-12-11 22:50:08 as ** along with 2 people mtuters ryanraaum
  • A Map of Recent Positive Selection in the Human Genome.
    PLoS Biol, Vol. 4, No. 3. (7 March 2006)
    by Benjamin F F Voight, Sridhar Kudaravalli, Xiaoquan Wen, Jonathan K K Pritchard
    posted to hapmap popgen selection by tiago on 2006-04-15 01:07:19 as **** along with 20 people and 7 groups stevanspringer kentsis bpb balajis indigoviolet ejeffery pradiptaray madhadron breden larios ashandanj hdopazo livingthingdan djkt mbeautru grahamc suizan shoshin iris42 dmc Bioinformatics EisenLab FAB-lab SFUAntibodyResearch BioinfoCIPF livingthing Durbin group
  • Biases and reconciliation in estimates of linkage disequilibrium in the human genome.
    Am J Hum Genet, Vol. 78, No. 4. (April 2006), pp. 588-603.
    by I Pe'er, YR Chretien, PI de Bakker, JC Barrett, MJ Daly, DM Altshuler
    posted to human ld popgen by tiago on 2006-04-15 00:50:03 as **** along with 1 person pcahan1
  • A haplotype map of the human genome
    Nature, Vol. 437, No. 7063., pp. 1299-1320.
    by The
    posted to hapmap popgen by tiago on 2006-04-15 00:43:56 as **** along with 14 people and 1 group balajis cfleet dlr pachowwhite balicea ashandanj mbeautru eukfn joepickrell cat_worth hms adijr mailund wenhui structural_bioinformatics
  • Efficiency and power in genetic association studies
    Nature Genetics, Vol. 37, No. 11. (23 October 2005), pp. 1217-1223.
    by Paul IW de Bakker, Roman Yelensky, Itsik Pe'er, Stacey B Gabriel, Mark J Daly, David Altshuler
    posted to hapmap popgen by tiago on 2006-04-15 00:43:05 as **** along with 8 people and 2 groups pcahan1 ashandanj giovanni debasis parkcc mailund jyuh Ayest Bioinformatics GeschwindLab
  • The Joint Allele-Frequency Spectrum in Closely Related Species
    Genetics, Vol. 177, No. 1. (1 September 2007), pp. 387-398.
    by Hua Chen, Richard E Green, Svante Paabo, Montgomery Slatkin
    posted to popgen by RichardDurbin on 2008-03-11 14:49:20 as ** along with 3 people and 1 group stajich ryanraaum ilowery Berkeley Mycology
  • Characterization of human control region sequences for Spanish individuals in a forensic mtDNA data set
    Legal Medicine, Vol. 9, No. 6. (November 2007), pp. 293-304.
    by Carlos J Alvarez, Diana L Johnson, Jose A Lorente, Esther Martinez-Espin, Luis J Martinez-Gonzalez, Marc Allard, Mark R Wilson, Bruce Budowle
    posted to human_ancestry mtdna popgen by Montrachet on 2008-04-19 05:25:04 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Inconsistencies in Neanderthal Genomic DNA Sequences.
    PLoS Genet, Vol. 3, No. 10. (12 October 2007)
    by Jeffrey D D Wall, Sung K K Kim
    posted to human_ancestry neanderthal popgen by Montrachet on 2008-03-16 17:14:29 as read along with 1 person Archaeogenetics
  • Recombination or mutation rate heterogeneity? Implications for Mitochondrial Eve
    Trends in Genetics, Vol. 19, No. 2. (February 2003), pp. 84-90.
    by Erika Hagelberg
    posted to human_ancestry mtdna popgen recombination by Montrachet on 2008-04-02 19:40:07 as **
  • Neandertal Genetic Diversity: A Fresh Look from Old Samples
    Current Biology, Vol. 16, No. 16. (22 August 2006), pp. R650-R652.
    by Laurent Excoffier
    posted to human_ancestry mtdna neanderthal popgen by Montrachet on 2008-03-16 16:23:27 as read
  • Sheep Mitochondrial DNA Variation in European, Caucasian, and Central Asian Areas
    Mol Biol Evol, Vol. 23, No. 9. (1 September 2006), pp. 1776-1783.
    by Miika Tapio, Nurbiy Marzanov, Mikhail Ozerov, Mirjana Cinkulov, Galina Gonzarenko, Tatyana Kiselyova, Maciej Murawski, Haldja Viinalass, Juha Kantanen
    posted to mtdna popgen sheep by Montrachet on 2008-03-14 19:50:11 as ** along with 1 person Garamonfok
  • Evidence of three maternal lineages in Near Eastern sheep supporting multiple domestication events.
    Proc Biol Sci, Vol. 272, No. 1577. (22 October 2005), pp. 2211-2217.
    by S Pedrosa, M Uzun, JJ Arranz, B Gutiérrez-Gil, F San Primitivo, Y Bayón
    posted to mtdna popgen sheep by Montrachet on 2008-03-14 19:47:16 as read
  • Waiting with and without recombination: the time to production of a double mutant.
    Theor Popul Biol, Vol. 53, No. 3. (June 1998), pp. 199-215.
    by FB Christiansen, SP Otto, A Bergman, MW Feldman
    posted to coevolution popgen by mdimmic on 2004-12-13 22:07:51
  • The molecular population genetics of regulatory genes
    Molecular Ecology, Vol. 9, No. 10. (2000), pp. 1451-1461.
    by Michael D Purugganan
    posted to inside popgen review by lusk on 2007-02-13 23:43:42 as ***
  • Divergence Population Genetics of Chimpanzees
    Molecular Biology and Evolution, Vol. 22, No. 2., 297.
    by Yong-Jin Won, Jody Hey
    posted to popgen primate by jshapiro on 2005-02-14 21:07:35 as **
  • Whole-Genome Patterns of Common DNA Variation in Three Human Populations
    Science, Vol. 307, No. 5712. (18 February 2005), pp. 1072-1079.
    by David A Hinds, Laura L Stuve, Geoffrey B Nilsen, Eran Halperin, Eleazar Eskin, Dennis G Ballinger, Kelly A Frazer, David R Cox
    posted to genome human popgen by jshapiro on 2005-02-18 21:26:35 as read along with 6 people and 1 group mercaptan akeyj saxonov Archaeogenetics hdopazo djkt BioinfoCIPF
  • The limits of theoretical population genetics.
    Genetics, Vol. 169, No. 1. (January 2005), pp. 1-7.
    by J Wakeley
    posted to popgen review by jshapiro on 2005-02-16 17:34:30 as read
  • Evidence for Archaic Asian Ancestry on the Human X Chromosome
    Molecular Biology and Evolution, Vol. 22, No. 2., 189.
    by Daniel Garrigan, Zahra Mobasher, Tesa Severson, Jason A Wilder, Michael F Hammer
    posted to human popgen by jshapiro on 2005-02-14 21:08:29 as **
  • Linkage disequilibrium: what history has to tell us.
    Trends Genet, Vol. 18, No. 2. (February 2002), pp. 83-90.
    by M Nordborg, S Tavaré
    posted to coalescence disequilibrium linkage popgen by hdopazo on 2006-08-11 14:24:28 as ** along with 1 person and 1 group pcahan1 BioinfoCIPF
  • Detecting recent positive selection in the human genome from haplotype structure
    Nature, Vol. 419, No. 6909. (24 October 2002), pp. 832-837.
    by Pardis C Sabeti, David E Reich, John M Higgins, Haninah Z Levine, Daniel J Richter, Stephen F Schaffner, Stacey B Gabriel, Jill V Platko, Nick J Patterson, Gavin J Mcdonald, Hans C Ackerman, Sarah J Campbell, David Altshuler, Richard Cooper, Dominic Kwiatkowski, Ryk Ward, Eric S Lander
    posted to human popgen positive selection by hdopazo on 2006-08-10 11:37:22 as ** along with 5 people and 1 group brant ausiddiqui djkt jasonflannick balicea BioinfoCIPF
  • Resources for Genetic Variation Studies.
    Annu Rev Genomics Hum Genet (7 June 2006)
    by David Serre, Thomas J J Hudson
    posted to coalescence genomics human popgen by hdopazo on 2006-08-11 14:29:40 as ** along with 1 person and 1 group sanchezbuelna BioinfoCIPF
  • Positive selection in MAOA gene is human exclusive: determination of the putative amino acid change selected in the human lineage.
    Hum Genet, Vol. 115, No. 5. (October 2004), pp. 377-386.
    by AM Andrés, M Soldevila, A Navarro, KK Kidd, B Oliva, J Bertranpetit
    posted to human popgen positive selection by hdopazo on 2006-08-10 11:45:24 as ** along with 1 person and 1 group rhancock BioinfoCIPF
  • Linkage disequilibrium patterns vary substantially among populations
    European Journal of Human Genetics, Vol. aop, No. current. (19 January 2005)
    by Sarah L Sawyer, Namita Mukherjee, Andrew J Pakstis, Lars Feuk, Judith R Kidd, Anthony J Brookes, Kenneth K Kidd
    posted to genomics human popgen snp by hdopazo on 2006-08-11 15:27:04 as ** along with 2 people and 2 groups ladygoat evoltropia CGREL BioinfoCIPF
  • Genomic signatures of positive selection in humans and the limits of outlier approaches
    Genome Res., Vol. 16, No. 8. (1 August 2006), pp. 980-989.
    by Joanna L Kelley, Jennifer Madeoy, John C Calhoun, Willie Swanson, Joshua M Akey
    posted to genomics popgen positive selection snp by hdopazo on 2006-08-11 14:45:38 as ** along with 1 person and 1 group djkt BioinfoCIPF
  • Interrogating a high-density SNP map for signatures of natural selection.
    Genome Res, Vol. 12, No. 12. (December 2002), pp. 1805-1814.
    by JM Akey, G Zhang, K Zhang, L Jin, MD Shriver
    posted to genomics popgen snp by hdopazo on 2006-08-11 15:09:00 as ** along with 2 people and 1 group JBEgwa01 iris42 BioinfoCIPF
  • A whole genome long-range haplotype (WGLRH) test for detecting imprints of positive selection in human populations.
    Bioinformatics (15 July 2006)
    by Chun Zhang, Dione K K Bailey, Tarif Awad, Guoying Liu, Guoliang Xing, Manqiu Cao, Venu Valmeekam, Jacques Retief, Hajime Matsuzaki, Margaret Taub, Mark Seielstad, Giulia C C Kennedy
    posted to genomics human popgen positive selection snp by hdopazo on 2006-08-11 14:33:28 as ** along with 1 person and 1 group iris42 BioinfoCIPF
  • Positive Natural Selection in the Human Lineage
    Science, Vol. 312, No. 5780. (16 June 2006), pp. 1614-1620.
    by PC Sabeti, SF Schaffner, B Fry, J Lohmueller, P Varilly, O Shamovsky, A Palma, TS Mikkelsen, D Altshuler, ES Lander
    posted to human popgen positive selection by hdopazo on 2006-08-10 11:32:12 as ** along with 7 people and 4 groups dchughes cmm larios djkt ramensky iris42 jasonflannick FAB-lab G4ID BioinfoCIPF Genetics-of-Gambling
  • Natural selection on protein-coding genes in the human genome
    Nature, Vol. 437, No. 7062., pp. 1153-1157.
    by Carlos D Bustamante, Adi Fledel-Alon, Scott Williamson, Rasmus Nielsen, Melissa T Hubisz, Stephen Glanowski, David M Tanenbaum, Thomas J White, John J Sninsky, Ryan D Hernandez, Daniel Civello, Mark D Adams, Michele Cargill, Andrew G Clark
    posted to human popgen positive selection by hdopazo on 2006-08-10 11:46:39 as ** along with 15 people and 5 groups stevanspringer operon jwortman aprasad dayjm balajis marcius dpollard djkt JBEgwa01 ramensky Garamonfok iris42 dmc shoshin EisenLab FAB-lab BioinfoCIPF SGU-CIPF Durbin group
  • Linkage disequilibrium in humans: models and data.
    Am J Hum Genet, Vol. 69, No. 1. (July 2001), pp. 1-14.
    by JK Pritchard, M Przeworski
    posted to disequilibrium linkage popgen by hdopazo on 2006-08-11 14:26:19 as ** along with 1 group BioinfoCIPF
  • Insights into recombination from patterns of linkage disequilibrium in humans.
    Genetics, Vol. 167, No. 1. (May 2004), pp. 387-397.
    by SE Ptak, K Voelpel, M Przeworski
    posted to disequilibrium linkage popgen recombination by hdopazo on 2006-08-11 14:27:37 as ** along with 1 person and 2 groups raizada Raizada-Lab BioinfoCIPF
  • Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation
    PLoS Biology, Vol. 6, No. 7. (1 July 2008), e177.
    by Sheri L Simmons, Genevieve Dibartolo, Vincent J Denef, Daniela S Goltsman, Michael P Thelen, Jillian F Banfield
    posted to empirical metagenomic ploscb08 popgen by djkt to the group iSEEM on 2008-07-24 01:22:37 as ***
  • Inference of population genetic parameters in metagenomics: A clean look at messy data
    Genome Res., Vol. 16, No. 10. (1 October 2006), pp. 1320-1327.
    by Philip L Johnson, Montgomery Slatkin
    posted to metagenomic ploscb08 popgen by djkt to the group iSEEM on 2008-07-24 23:14:44 as read along with 2 people jmeppley bluto
  • Viral population estimation using pyrosequencing.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by N Eriksson, L Pachter, Y Mitsuya, SY Rhee, C Wang, B Gharizadeh, M Ronaghi, RW Shafer, N Beerenwinkel
    posted to diversity metagenomic method popgen virus by djkt to the group iSEEM on 2008-07-24 23:16:52 as read along with 2 people jmeppley bmaust
  • Population Genetics of Polymorphism and Divergence
    Genetics, Vol. 132, No. 4. (1 December 1992), pp. 1161-1176.
    by SA Sawyer, DL Hartl
    posted to evolution popgen selection by djkt on 2006-08-03 23:18:44 as read along with 3 people bpb pradiptaray emptyhb
  • Context dependence, ancestral misidentification, and spurious signatures of natural selection
    Mol. Biol. Evol., Vol. 24, No. 8. (2007), pp. 1792-1800.
    by RD Hernandez, SH Williamson, CD Bustamante
    posted to msa popgen snps by djkt on 2008-08-08 01:33:45 as ** along with 2 people bpb pradiptaray
  • Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome
    Genome Res. (7 November 2007), gr.6691007.
    by Peter Andolfatto
    posted to fly popgen selection by djkt on 2007-12-05 22:15:06 as ** along with 4 people and 1 group dpollard usagi-kirin mimulus_99 emptyhb EisenLab
  • Genetic traces of ancient demography.
    Proc Natl Acad Sci U S A, Vol. 95, No. 4. (17 February 1998), pp. 1961-1967.
    by HC Harpending, MA Batzer, M Gurven, LB Jorde, AR Rogers, ST Sherry
    posted to evolution popgen by djkt on 2006-08-04 01:59:31 as **
  • High-Resolution Mapping of Crossovers Reveals Extensive Variation in Fine-Scale Recombination Patterns Among Humans
    Science (31 January 2008), 1151851.
    by Graham Coop, Xiaoquan Wen, Carole Ober, Jonathan K Pritchard, Molly Przeworski
    posted to popgen recombination by djkt on 2008-03-07 19:33:13 as ** along with 3 people and 1 group stajich lisa1 biomcgary Berkeley Mycology
  • The discovery of single-nucleotide polymorphisms--and inferences about human demographic history.
    Am J Hum Genet, Vol. 69, No. 6. (December 2001), pp. 1332-1347.
    by J Wakeley, R Nielsen, SN Liu-Cordero, K Ardlie
    posted to design evolution popgen snps by djkt on 2006-08-04 01:22:38 as read
  • Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans
    Genome Biology, Vol. 9, No. 8. (2008)
    by Mara Lawniczak, Alisha Holloway, David Begun, Corbin Jones
    posted to expression fly popgen variation by djkt on 2008-08-18 21:15:41 as ** along with 3 people and 1 group APRegier caseybrown cisevol cis-regulatory-evolution
  • The fine-scale structure of recombination rate variation in the human genome.
    Science, Vol. 304, No. 5670. (23 April 2004), pp. 581-584.
    by GA McVean, SR Myers, S Hunt, P Deloukas, DR Bentley, P Donnelly
    posted to popgen recombination by djkt on 2006-08-04 01:24:07 as read along with 1 person and 1 group alexr Autoregulation
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