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Tag polymerase [110 articles]

Recent papers classified by the tag polymerase.
  • The RNA polymerase II CTD kinase Ctk1 functions in translation elongation.
    Genes Dev, Vol. 21, No. 11. (1 June 2007), pp. 1409-1421.
    by Susanne Röther, Katja Sträßer
    posted to ctd ctd-cdk ctk1 elongation ii kinase polymerase rna rnapii translation by xico on 2007-06-06 16:15:51 as ***** along with 1 group WetBiology
  • Mutual targeting of mediator and the TFIIH kinase Kin28.
    J Biol Chem, Vol. 279, No. 28. (9 July 2004), pp. 29114-29120.
    by BW Guidi, G Bjornsdottir, DC Hopkins, L Lacomis, H Erdjument-Bromage, P Tempst, LC Myers
    posted to cdk7 ctd ctd-kinase initiation kin28 mediator polymerase rna rnapii tfiih transcription by xico on 2006-04-04 17:43:45 as **** along with 1 group WetBiology
  • Single-molecule analysis of RNA polymerase transcription.
    Annu Rev Biophys Biomol Struct, Vol. 35 (2006), pp. 343-360.
    by L Bai, TJ Santangelo, MD Wang
    posted to analysis pic polymerase review rna single-molecule tec transcription by xico on 2007-05-18 01:23:56 as **** along with 1 group WetBiology
  • Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS.
    Mol Cell, Vol. 16, No. 6. (22 December 2004), pp. 955-965.
    by H Kettenberger, KJ Armache, P Cramer
    posted to complex elongation polymerase rna sructure tfiis transcription by xico on 2005-12-26 22:34:31 as ** along with 1 group WetBiology
  • Transcription regulation and animal diversity.
    Nature, Vol. 424, No. 6945. (10 July 2003), pp. 147-151.
    by M Levine, R Tjian
    posted to animal diversity enhancer factor gene polymerase promoter regulation rna rnapolii transcription by xico on 2007-05-27 01:35:17 as **** along with 7 people and 2 groups Lauren_Jones nickluscombe djkt lusk Jporci heliopais brant WetBiology EBI-regulation
  • The multicoloured world of promoter recognition complexes.
    EMBO J, Vol. 23, No. 1. (14 January 2004), pp. 2-8.
    by F Müller, L Tora
    posted to complex polymerase promoter recognition rna transcription by xico on 2006-01-09 15:33:51 as *** along with 1 person and 1 group myrtilus WetBiology
  • In vitro replication slippage by DNA polymerases from thermophilic organisms
    J Mol Biol, Vol. 312, No. 2. (14 September 2001), pp. 323-333.
    by E Viguera, D Canceill, SD Ehrlich
    posted to dna hairpin polymerase by stsaft on 2006-02-27 23:36:54 as ** along with 2 people davidng ohara
  • Inverted repeats as genetic elements for promoting DNA inverted duplication: implications in gene amplification
    Nucl. Acids Res., Vol. 29, No. 17. (1 September 2001), pp. 3529-3538.
    by Ching-Tai Lin, Wei-Hsin Lin, Yi L Lyu, Jacqueline Whang-Peng
    posted to polymerase hairpin by stsaft on 2007-02-01 21:51:09 as *****
  • Elongation of repetitive DNA by DNA polymerase from a hyperthermophilic bacterium Thermus thermophilus
    Nucl. Acids Res., Vol. 28, No. 20. (15 October 2000), pp. 3999-4004.
    by Norio Ogata, Hirofumi Morino
    posted to polymerase hairpin by stsaft on 2007-02-01 21:54:20 as *****
  • Incorporation of reporter molecule-labeled nucleotides by DNA polymerases. II. High-density labeling of natural DNA
    Nucl. Acids Res., Vol. 31, No. 10. (15 May 2003), pp. 2636-2646.
    by Taurai Tasara, Bernhard Angerer, Martine Damond, Holger Winter, Sabine Dorhofer, Ulrich Hubscher, Mario Amacker
    posted to dna incorporation polymerase reporter by stsaft on 2006-02-27 23:33:35 as *****
  • RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo
    Nature Genetics, Vol. 39, No. 12. (11 November 2007), pp. 1512-1516.
    by Julia Zeitlinger, Alexander Stark, Manolis Kellis, Joung-Woo Hong, Sergei Nechaev, Karen Adelman, Michael Levine, Richard A Young
    posted to development drosophila embryo gene melanogaster polymerase rna stalling by Stew on 2007-12-14 00:13:07 as ** along with 5 people margaritis rschulz caseybrown mikaelhuss inesdesantiago
  • EM visualization of Pol II genes in Drosophila: most genes terminate without prior 3' end cleavage of nascent transcripts.
    Chromosoma, Vol. 111, No. 1. (March 2002), pp. 1-12.
    by YN Osheim, ML Sikes, AL Beyer
    posted to em ii pol polymerase termination transcription by skoch3 on 2008-03-20 05:40:05 as read along with 1 group Koch_Lab
  • Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells
    Nature Cell Biology, Vol. 9, No. 12. (25 November 2007), pp. 1428-1435.
    by Julie K Stock, Sara Giadrossi, Miguel Casanova, Emily Brookes, Miguel Vidal, Haruhiko Koseki, Neil Brockdorff, Amanda G Fisher, Ana Pombo
    posted to bivalent ctd h3k27me plolii poised polycomb polymerase prc ring1a ring1b ser-2 ser-5 by sebastien_vigneau on 2008-05-22 16:18:16 as read along with 1 person inesdesantiago
  • The expanding RNA polymerase III transcriptome.
    Trends Genet (29 October 2007)
    by Giorgio Dieci, Gloria Fiorino, Manuele Castelnuovo, Martin Teichmann, Aldo Pagano
    posted to poliii polymerase transcription transcriptome by sebastien_vigneau on 2007-11-13 09:00:20 as *** along with 1 person dchughes
  • Cell-free cloning of highly expanded CTG repeats by amplification of dimerized expanded repeats.
    Nucleic Acids Res (7 February 2008)
    by Robert J J Osborne, Charles A A Thornton
    posted to cloning ctg polymerase technique by sebastien_vigneau on 2008-02-18 10:40:35 as **
  • Enzymological Considerations for the Theoretical Description of the Quantitative Competitive Polymerase Chain Reaction (QC-PCR)
    Journal of Theoretical Biology, Vol. 184, No. 4. (21 February 1997), pp. 433-440.
    by S Schnell, C Mendoza
    posted to chain competitive efficiency enzyme fitting kinetics polymerase procedure reaction by schnell on 2006-10-21 00:24:52 as ***** along with 1 group IU_Informatics_CX
  • Theoretical Description of the Polymerase Chain Reaction
    Journal of Theoretical Biology, Vol. 188, No. 3. (7 October 1997), pp. 313-318.
    by S Schnell, C Mendoza
    posted to chain curves description fitting mathematical polymerase progress reaction w-function by schnell on 2006-10-21 00:22:33 as ***** along with 1 group IU_Informatics_CX
  • Stalled polymerases and transcriptional regulation
    Nature Genetics, Vol. 39, No. 12., pp. 1421-1422.
    by John W Tamkun
    posted to elongation expression gene polymerase rna stalling transcription by rschulz on 2007-12-18 10:29:37 as read along with 4 people cassj dchughes cjeans emptyhb
  • The Rpb4 subunit of RNA polymerase II contributes to cotranscriptional recruitment of 3' processing factors.
    Molecular and cellular biology, Vol. 28, No. 6. (March 2008), pp. 1883-1891.
    by VM Runner, V Podolny, S Buratowski
    posted to polyadenylation polymerase rpb4 transcription by rschulz on 2008-06-26 09:35:30 as **
  • RNA polymerase is poised for activation across the genome
    Nature Genetics, Vol. 39, No. 12. (11 November 2007), pp. 1507-1511.
    by Ginger W Muse, Daniel A Gilchrist, Sergei Nechaev, Ruchir Shah, Joel S Parker, Sherry F Grissom, Julia Zeitlinger, Karen Adelman
    posted to drosophila elongation expression gene polymerase rna stalling transcription by rschulz on 2007-12-18 10:27:29 as ** along with 4 people and 1 group margaritis skoch3 caseybrown mikaelhuss Koch_Lab
  • Use of T7 RNA polymerase and its mutants for incorporation of nucleoside analogs into RNA.
    Methods Enzymol, Vol. 317 (2000), pp. 65-74.
    by R Sousa
    posted to polymerase rna t7 by perrywoo on 2006-08-08 21:47:34 as **
  • A modified procedure for fast purification of T7 RNA polymerase.
    Protein Expr Purif, Vol. 16, No. 2. (July 1999), pp. 355-358.
    by Y Li, E Wang, Y Wang
    posted to polymerase purification rna t7 by Odi on 2006-04-27 10:09:40 as *** along with 1 person viktor21614
  • Rapid and simple purification of T7 RNA polymerase.
    Nucleic Acids Res, Vol. 19, No. 8. (25 April 1991)
    by V Zawadzki, HJ Gross
    posted to polymerase purification rna t7 by Odi on 2006-04-27 10:08:40 as **
  • Crystal structure of the polymerase PAC–PB1N complex from an avian influenza H5N1 virus
    Nature (09 July 2008)
    by Xiaojing He, Jie Zhou, Mark Bartlam, Rongguang Zhang, Jianyuan Ma, Zhiyong Lou, Xuemei Li, Jingjing Li, Andrzej Joachimiak, Zonghao Zeng, Ruowen Ge, Zihe Rao, Yingfang Liu
    posted to avian complex crystallography h5n1 polymerase structure virus by neils on 2008-08-28 00:46:13 as **
  • Protein Phosphatase-1 Is Targeted to DNA Polymerase δ via an Interaction with the p68 Subunit
    Biochemistry (1 October 2008)
    by Yan Gao, Yajing Zhou, Bin Xie, Sufang Zhang, Amal Rahmeh, Hua-Shan Huang, Marietta Y Lee, Ernest Y Lee
    posted to protein-protein polymerase phosphatase interaction by neils on 2008-10-01 11:12:30 as **
  • The structural basis for an essential subunit interaction in influenza virus RNA polymerase
    Nature (27 July 2008)
    by Eiji Obayashi, Hisashi Yoshida, Fumihiro Kawai, Naoya Shibayama, Atsushi Kawaguchi, Kyosuke Nagata, Jeremy RH Tame, Sam-Yong Park
    posted to interaction polymerase protein-protein subunit virus by neils on 2008-08-28 00:47:44 as **
  • Base Pair Hydrogen Bonds Are Essential for Proofreading Selectivity by the Human Mitochondrial DNA Polymerase
    J. Biol. Chem., Vol. 283, No. 21. (23 May 2008), pp. 14411-14416.
    by Harold R Lee, Sandra A Helquist, Eric T Kool, Kenneth A Johnson
    posted to isosteres kool polymerase by nahnah on 2008-05-19 06:19:18 as **
  • A test of the model that RNA polymerase III transcription is regulated by selective induction of the 110 kDa subunit of TFIIIC.
    Nucleic Acids Res, Vol. 34, No. 11. (2006), pp. 3399-3407.
    by F Innes, B Ramsbottom, RJ White
    posted to ncrna polymerase trna by mtagaya on 2006-09-13 09:01:29 as **
  • Two conserved sequence blocks within eukaryotic tRNA genes are major promoter elements.
    Nature, Vol. 294, No. 5842. (17 December 1981), pp. 626-631.
    by G Galli, H Hofstetter, ML Birnstiel
    posted to ncrna polymerase transcription trna by mtagaya on 2006-09-08 09:19:02 as **
  • RNA polymerase III transcribes human microRNAs.
    Nat Struct Mol Biol (12 November 2006)
    by Glen M M Borchert, William Lanier, Beverly L L Davidson
    posted to alu microrna ncrna polymerase repeat transcription by mtagaya on 2006-11-15 00:51:44 as read along with 4 people and 1 group heliopais tardigrade andersbj N0131826 microRNA
  • Survey and summary: transcription by RNA polymerases I and III.
    Nucleic Acids Res, Vol. 28, No. 6. (15 March 2000), pp. 1283-1298.
    by MR Paule, RJ White
    posted to polymerase rna transcription trna by mtagaya on 2006-09-08 09:15:55 as **
  • The RNA polymerase III-dependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications.
    Nucleic Acids Res, Vol. 34, No. 6. (2006), pp. 1816-1835.
    by C Marck, R Kachouri-Lafond, I Lafontaine, E Westhof, B Dujon, H Grosjean
    posted to cluster ncrna polymerase trna by mtagaya on 2006-10-16 10:02:45 as ** along with 1 person Eonwe
  • Extensive post-transcriptional regulation of microRNAs and its implications for cancer.
    Genes Dev, Vol. 20, No. 16. (15 August 2006), pp. 2202-2207.
    by JM Thomson, M Newman, JS Parker, EM Morin-Kensicki, T Wright, SM Hammond
    posted to microrna ncrna polymerase by mtagaya on 2006-09-21 03:16:26 as ** along with 4 people capitall tardigrade bootsy maralena
  • Inhibition of a Transcriptional Pause by RNA Anchoring to RNA Polymerase
    Molecular Cell, Vol. 31, No. 5. (05 September 2008), pp. 683-694.
    by N Komissarova, T Velikodvorskaya, R Sen, R King, S Banikmaiti, R Weisberg
    posted to polymerase pausing elongation backtracking by margaritis on 2008-10-16 11:55:44 as **
  • Stimulation of RNA polymerase II transcript cleavage activity contributes to maintain transcriptional fidelity in yeast
    Genes to Cells, Vol. 12, No. 5. (May 2007), pp. 547-559.
    by Koyama, Hiroshi, Ito, Takahiro, Nakanishi, Toshiyuki, Sekimizu, Kazuhisa
    posted to transcritpion polymerase mutation fidelity by margaritis on 2008-11-26 15:26:15 as **
  • Jamming the ratchet of transcription
    Nature Structural & Molecular Biology, Vol. 15, No. 8., pp. 777-779.
    by Vladimir Svetlov, Evgeny Nudler
    posted to views transcription review polymerase fidelity by margaritis on 2008-11-26 15:31:25 as **
  • Single-molecule tracking of mRNA exiting from RNA polymerase II.
    Proc Natl Acad Sci U S A (28 December 2007)
    by Joanna Andrecka, Robert Lewis, Florian Brückner, Elisabeth Lehmann, Patrick Cramer, Jens Michaelis
    posted to mrnap polymerase rnap transcription by margaritis on 2008-01-09 11:21:50 as **** along with 1 person yusdi
  • Real-time measurement of in vitro transcription.
    Nucleic Acids Res, Vol. 32, No. 9. (2004)
    by SA Marras, B Gold, FR Kramer, I Smith, S Tyagi
    posted to fluorochrome polymerase rna by madhadron on 2006-07-11 03:00:46 as **
  • Homogeneous fluorescent assay for RNA polymerase.
    Anal Biochem, Vol. 342, No. 2. (15 July 2005), pp. 206-213.
    by M Kozlov, V Bergendahl, R Burgess, A Goldfarb, A Mustaev
    posted to fluorochrome polymerase rna by madhadron on 2006-07-11 02:57:59 as **
  • Normal immunoglobulin gene somatic hypermutation in Pol kappa-Pol iota double-deficient mice.
    Immunol Lett, Vol. 98, No. 2. (15 May 2005), pp. 259-264.
    by T Shimizu, T Azuma, M Ishiguro, N Kanjo, S Yamada, H Ohmori
    posted to polymerase somatic hypermutation iota kappa by kracher on 2006-09-06 14:49:08 as ** along with 1 group Immunoinformatics
  • Induction of somatic hypermutation in immunoglobulin genes is dependent on DNA polymerase iota.
    Nature, Vol. 419, No. 6910. (31 October 2002), pp. 944-947.
    by A Faili, S Aoufouchi, E Flatter, Q Guéranger, CA Reynaud, JC Weill
    posted to hypermutation iota polymerase somatic by kracher on 2006-09-06 14:48:34 as ** along with 1 group Immunoinformatics
  • Flavonoid glycoside: a new inhibitor of eukaryotic DNA polymerase alpha and a new carrier for inhibitor-affinity chromatography.
    Biochemical and biophysical research communications, Vol. 301, No. 2. (7 February 2003), pp. 480-487.
    by Y Mizushina, T Ishidoh, S Kamisuki, S Nakazawa, M Takemura, F Sugawara, H Yoshida, K Sakaguchi
    posted to flavonoid inhibitor polymerase by kengg on 2008-08-07 15:32:54 as **
  • Pyridoxal 5'-phosphate is a selective inhibitor in vivo of DNA polymerase alpha and epsilon.
    Biochemical and biophysical research communications, Vol. 312, No. 4. (26 December 2003), pp. 1025-1032.
    by Y Mizushina, X Xu, K Matsubara, C Murakami, I Kuriyama, M Oshige, M Takemura, N Kato, H Yoshida, K Sakaguchi
    posted to polymerase by kengg on 2008-10-01 16:44:49 as **
  • Structure-function studies of DNA polymerase lambda.
    DNA repair, Vol. 4, No. 12. (8 December 2005), pp. 1358-1367.
    by M Garcia-Diaz, K Bebenek, G Gao, LC Pedersen, RE London, TA Kunkel
    posted to flavonoid polymerase repair review by kengg on 2008-08-27 16:28:07 as **
  • Genetic analysis of a La homolog in Drosophila melanogaster
    Nucl. Acids Res., Vol. 28, No. 5. (1 March 2000), pp. 1078-1084.
    by Chunyang Bai, Peter P Tolias
    posted to conserved development drosophila embryo embryonic eukaryote gene genetic homolog hypothesis ires la larvae melanogaster morphogenesis polymerase protein ribosome rna translational vivo by jonathanjacobs on 2008-04-08 19:52:25 as ** along with 1 group The La Autoantigen.
  • Identification of Lhp1p-associated RNAs by microarray analysis in Saccharomyces cerevisiae reveals association with coding and noncoding RNAs
    Proceedings of the National Academy of Sciences, Vol. 101, No. 2. (13 January 2004), pp. 434-439.
    by Maki Inada, Christine Guthrie
    posted to genomics la mrna polymerase protein ribosome rna saccharomyces transcription translation eukaryote trna lhp1 by jonathanjacobs on 2008-03-31 16:37:55 as ** along with 1 group The La Autoantigen.
  • SELEX--a (r)evolutionary method to generate high-affinity nucleic acid ligands.
    Biomol Eng, Vol. 24, No. 4. (October 2007), pp. 381-403.
    by R Stoltenburg, C Reinemann, B Strehlitz
    posted to affinity aptamer dna evolution ligands molecular oligonucleotide polymerase protein proteomics research rna science selection selex by jonathanjacobs on 2008-05-14 18:48:28 as read along with 2 people erdos guhjy
  • A La-Related Protein Modulates 7SK snRNP Integrity to Suppress P-TEFb-Dependent Transcriptional Elongation and Tumorigenesis
    Molecular Cell, Vol. 29, No. 5. (14 March 2008), pp. 588-599.
    by Nanhai He, Nadine S Jahchan, Eunmee Hong, Qiang Li, Mark A Bayfield, Richard J Maraia, Kunxin Luo, Qiang Zhou
    posted to differentiation drosophila homolog human la pips polymerase premrna protein ptefb rna snrna snrnp transcription tumorigenesis nucleus by jonathanjacobs on 2008-03-31 18:13:35 as ** along with 1 group The La Autoantigen.
  • Downregulation of the essential Trypanosoma brucei La protein affects accumulation of elongator methionyl-tRNA
    Molecular and Biochemical Parasitology, Vol. 144, No. 1. (November 2005), pp. 104-108.
    by George K Arhin, Shuiyuan Shen, Iehsus F Perez, Christian Tschudi, Elisabetta Ullu
    posted to cerevisiae chaperone conserved cytoplasmic database degradation endonucleolytic eukaryotes eukaryotic evolution experimental function gene homologue human la methionylpretrna microarray molecular motif mrnas nuclear nuclease nucleolar oligou phosphoprotein pol polymerase polyuridine prerrna presl pretrnas protein protozoa ribonucleoprotein rna saccharomyces snorna snrna splicing transcription trna trypanosome by jonathanjacobs on 2008-04-08 19:59:38 as **
  • Identification of RNA ligands that bind hepatitis C virus polymerase selectively and inhibit its RNA synthesis from the natural viral RNA templates
    Virology, Vol. 307, No. 2. (15 March 2003), pp. 301-316.
    by Nam V Vo, Jong-Won Oh, Michael M Lai
    posted to aptamer conserved evolution hcv ligand nucleotide polymerase protein purine pyrimidine rna selex sequence structure viral by jonathanjacobs on 2008-06-16 15:11:45 as **
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