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Tag pipeline [56 articles]

Recent papers classified by the tag pipeline.
  • Optimal Pipeline Sizing Technique
    Journal of Transportation Engineering, Vol. 122, No. 3. (1996), pp. 254-257.
    by Helmi M Hathoot, Ahmed, Fawzi S Mohammad
    posted to sizing pipeline by zdhmp3 on 2008-12-01 10:24:37 as **
  • Data Pipelines and Virtual Screening: Automating the Process
    QSAR & Combinatorial Science, Vol. 25, No. 12. (2006), pp. 1181-1191.
    by Robert d, Shikha Varma-O'Brien, David Rogers
    posted to pipeline by yalexeev on 2008-01-30 16:49:33 as ** along with 1 person nlapalu
  • Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs.
    Genome research (10 October 2008)
    by Benedict Paten, Javier Herrero, Kathryn Beal, Stephen Fitzgerald, Ewan Birney
  • MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
    Genome Res. (19 November 2007), gr.6743907.
    by Brandi L Cantarel, Ian Korf, Sofia M Robb, Genis Parra, Eric Ross, Barry Moore, Carson Holt, Sanchez, Mark Yandell
  • notes Can policy intervention beat the resource curse? Evidence from the ChadCameroon pipeline project
    African Affairs, Vol. 105, No. 418. (January 2006), pp. 1-25.
    posted to cameroon pipeline resource by shangnan on 2006-11-30 14:06:10 as ** along with 1 person pickinjava
  • An analytical pipeline for genomic representations used for cytosine methylation studies
    Bioinformatics (18 March 2008), btn096.
    by Reid F Thompson, Mark Reimers, Batbayar Khulan, Mathieu Gissot, Todd A Richmond, Quan Chen, Xin Zheng, Kami Kim, John M Greally
    posted to pipeline by renatomilani on 2008-04-29 19:55:01 as ** along with 1 person epigenetics
  • Information quality in proteomics
    Brief Bioinform, Vol. 9, No. 2. (1 March 2008), pp. 174-188.
    by David A Stead, Norman W Paton, Paolo Missier, Suzanne M Embury, Cornelia Hedeler, Binling Jin, Alistair J Brown, Alun Preece
  • Illuminating drug discovery with biological pathways.
    FEBS Lett, Vol. 579, No. 8. (21 March 2005), pp. 1872-1877.
    by G Apic, T Ignjatovic, S Boyer, RB Russell
  • Classification in the presence of class noise using a probabilistic Kernel Fisher method
    Pattern Recogn., Vol. 40, No. 12. (December 2007), pp. 3349-3357.
    by Yunlei Li, Lodewyk FA Wessels, Dick de Ridder, Marcel JT Reinders
    posted to classification emiel kernel noise pipeline by ptrobajo on 2008-07-01 15:59:27 as **
  • Imagene: an integrated computer environment for sequence annotation and analysis.
    Bioinformatics, Vol. 15, No. 1. (January 1999), pp. 2-15.
  • An integrated computational pipeline and database to support whole-genome sequence annotation
    Genome Biology, Vol. 3, No. 12. (2002), pp. research0081.1-0081.11.
    by CJ Mungall, S Misra, BP Berman, J Carlson, E Frise, N Harris, B Marshall, S Shu, JS Kaminker, SE Prochnik, CD Smith, E Smith, JL Tupy, C Wiel, GM Rubin, SE Lewis
  • Implementation of precise interrupts in pipelined processors
    (1998), pp. 291-299.
    by James E Smith, Andrew R Pleszkun
    posted to architecture pipeline precise-interrupts by pedagand on 2008-03-02 09:18:04 as read
  • Bringing Web 2.0 to bioinformatics
    Brief Bioinform (8 October 2008), bbn041.
    by Zhang Zhang, Kei-Hoi Cheung, Jeffrey P Townsend
  • Automatic "pipeline" analysis of 3-D MRI data for clinical trials: application to multiple sclerosis.
    IEEE Trans Med Imaging, Vol. 21, No. 10. (October 2002), pp. 1280-1291.
    by AP Zijdenbos, R Forghani, AC Evans
  • Process pipeline scheduling
    Journal of Systems and Software, Vol. 81, No. 3. (March 2008), pp. 307-327.
    by Melissa Lemos, Marco A Casanova, Antonio L Furtado
    posted to pipeline by nlapalu on 2008-11-10 14:55:25 as **
  • Pegasys: software for executing and integrating analyses of biological sequences.
    BMC Bioinformatics, Vol. 5 (19 April 2004)
    by SP Shah, DY He, JN Sawkins, JC Druce, G Quon, D Lett, GX Zheng, T Xu, BF Ouellette
  • PepLine: A Software Pipeline for High-Throughput Direct Mapping of Tandem Mass Spectrometry Data on Genomic Sequences
    J. Proteome Res. (19 March 2008)
    by Myriam Ferro, Marianne Tardif, Erwan Reguer, Romain Cahuzac, Christophe Bruley, Thierry Vermat, Estelle Nugues, Marielle Vigouroux, Yves Vandenbrouck, J&#xe9 Garin, R&#xf4, Me, Alain Viari
  • notes Pipelining in multi-query optimization
    (2001), pp. 59-70.
    by Nilesh N Dalvi, Sumit K Sanghai, Prasan Roy, S Sudarshan
    posted to 2001 parallel pipeline pods sigmod by myui on 2007-10-17 06:46:39 as ***** along with 1 person carueda
  • Dataflow query execution in a parallel main-memory environment
    Distributed and Parallel Databases, Vol. 1, No. 1. (1 January 1993), pp. 103-128.
    by Annita N Wilschut, Peter M Apers
    posted to join pipeline pipelined-join by myui on 2007-11-18 13:31:52 as *** along with 1 person zflavio
  • XJoin: A Reactively-Scheduled Pipelined Join Operator
    IEEE Data Engineering Bulletin, Vol. 23, No. 2. (2000), pp. 27-33.
    by Tolga Urhan, Michael J Franklin
    posted to join pipeline pipelined-join by myui on 2007-11-18 13:26:37 as ****
  • notes An evaluation of binary xml encoding optimizations for fast stream based xml processing
    (2004), pp. 345-354.
    posted to bottleneck encoding parsing pipeline xml by myui on 2007-08-21 10:30:17 as ****
  • Dynamic Pipeline Scheduling for Improving Interactive Query Performance
    (2001), pp. 501-510.
    by Tolga Urhan, Michael J Franklin
    posted to 2001 io pipeline sched vldb by myui on 2008-03-08 19:12:01 as ***
  • The BEA/XQRL Streaming XQuery Processor
    (2003)
    posted to 2003 3 pipeline volcano xquery by myui on 2007-03-07 08:29:29 as read
  • QPipe: a simultaneously pipelined relational query engine
    (2005), pp. 383-394.
    by Stavros Harizopoulos, Vladislav Shkapenyuk, Anastassia Ailamaki
    posted to 2005 dbms parallel pipeline sigmod by myui on 2007-07-15 19:53:30 as **** along with 1 person boesswetter
  • Large-scale morphometric analysis of neuroanatomy and neuropathology.
    Anat Embryol (Berl), Vol. 210, No. 5-6. (December 2005), pp. 439-446.
    by AC Evans
  • The role of MRI in clinical trials of multiple sclerosis: comparison of image processing techniques.
    Ann Neurol, Vol. 41, No. 1. (January 1997), pp. 125-132.
    by AC Evans, JA Frank, J Antel, DH Miller
    posted to clinical-trials imaging mri multiple-sclerosis pipeline by jclau on 2006-03-25 16:02:53 as ****
  • The NIH MRI study of normal brain development.
    Neuroimage, Vol. 30, No. 1. (March 2006), pp. 184-202.
    by AC Evans,
    posted to brain development mri nihpd pediatric pipeline by jclau on 2006-03-25 15:37:57 as ***
  • Genome Annotation in Plants and Fungi: EuGene as a Model Platform
    Current Bioinformatics, Vol. 3, No. 2. (May 2008), pp. 87-97.
  • A Single-chip DBS Tuner-Demodulator SoC using Discrete AGC, Continuous I/Q Correction and 200MS/s Pipeline ADCs
    Radio Frequency Integrated Circuits (RFIC) Symposium, 2007 IEEE (2007), pp. 511-514.
    by A Maxim, R Poorfard, R Johnson, P Crawley, J Kao, Z Dong, M Chennam, T Nutt, D Trager
    posted to adc pipeline tv by intuition on 2008-06-03 11:33:29 as **
  • Exploiting forwarding to improve data bandwidth of instruction-set extensions
    (2006), pp. 43-48.
    by Ramkumar Jayaseelan, Haibin Liu, Tulika Mitra
  • Effective compiler support for predicated execution using the hyperblock
    (1992)
    by SA Mahlke, DC Lin, WY Chen, RE Hank, RA Bringmann
    posted to compiler pipeline scheduling by iammealva on 2008-02-17 13:29:16 as ** along with 1 person bunge
  • Iterative modulo scheduling: an algorithm for software pipelining loops
    (1994), pp. 63-74.
    by Ramakrishna B Rau
  • An overview of Ensembl.
    Genome Res, Vol. 14, No. 5. (May 2004), pp. 925-928.
  • Determination and validation of principal gene products
    Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 11-17.
    by Michael L Tress, Jan-Jaap Wesselink, Adam Frankish, Gonzalo Lopez, Nick Goldman, Ari Loytynoja, Tim Massingham, Fabio Pardi, Simon Whelan, Jennifer Harrow, Alfonso Valencia
    posted to pipeline workflow by dullhunk on 2008-01-30 16:22:40 as ** along with 1 person guhjy
  • Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis
    Brief Bioinform (29 October 2008), bbn045.
    by Mohamed R Aniba, Sophie Siguenza, Anne Friedrich, Frederic Plewniak, Olivier Poch, Aron Marchler-Bauer, Julie D Thompson
    posted to wms pipeline alignment by druvus on 2008-11-07 09:05:46 as ** along with 3 people guhjy treangen nuin
  • The design and realisation of the Virtual Research Environment for social sharing of workflows
    Future Generation Computer Systems, Vol. In Press, Corrected Proof
    by David De Roure, Carole Goble, Robert Stevens
    posted to wms taverna pipeline by druvus on 2008-11-04 09:39:17 as ** along with 2 people dullhunk fgibson
  • Bio-jETI: a service integration, design, and provisioning platform for orchestrated bioinformatics processes.
    BMC bioinformatics, Vol. 9 Suppl 4 (2008)
  • OREST: the online resource for EST analysis.
    Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008)
    by B Waegele, T Schmidt, HW Mewes, A Ruepp
    posted to pipeline est by druvus on 2008-10-16 10:09:24 as ** along with 3 people natstreet inesdesantiago guhjy
  • ESTIMA, a tool for EST management in a multi-project environment.
    BMC Bioinformatics, Vol. 5 (4 November 2004)
    by CG Kumar, R LeDuc, G Gong, L Roinishivili, HA Lewin, L Liu
    posted to pipeline est by druvus on 2008-10-16 10:06:49 as ** along with 1 person Schmidtc
  • annot8r: rapid assignment of GO, EC and KEGG annotations
    BMC Bioinformatics, Vol. 9 (09 April 2008), 180.
    by Ralf Schmid, Mark L Blaxter
  • Automated Programming for Bioinformatics Algorithm Deployment.
    Bioinformatics (3 January 2008)
    by Gil Alterovitz, Adnaan Jiwaji, Marco F F Ramoni
  • Beyond standardization: dynamic software infrastructures for systems biology
    Nature Reviews Genetics, Vol. 8, No. 3. (13 February 2007), pp. 235-243.
    by Morris A Swertz, Ritsert C Jansen
  • An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)
    PLoS ONE, Vol. 3, No. 7. (2 July 2008), e2566.
    by Dongying Wu, Amber Hartman, Naomi Ward, Jonathan A Eisen
  • ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    posted to pipeline est by druvus on 2008-10-16 09:27:21 as ** along with 2 people guhjy sgoetz
  • AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants
    Nucl. Acids Res. (14 October 2008), gkn650.
    by Chris Duran, Nikki Appleby, Terry Clark, David Wood, Michael Imelfort, Jacqueline Batley, David Edwards
    posted to software snp pipeline est database by druvus on 2008-12-03 08:42:23 as **
  • Automated Querying of Genome Databases
    PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e1.
    by Peter Schattner
  • Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline
    Nucl. Acids Res. (9 July 2007), gkm487.
    by Zasha Weinberg, Jeffrey E Barrick, Zizhen Yao, Adam Roth, Jane N Kim, Jeremy Gore, Joy X Wang, Elaine R Lee, Kirsten F Block, Narasimhan Sudarsan, Shane Neph, Martin Tompa, Walter L Ruzzo, Ronald R Breaker
    posted to srna pipeline bacteria by druvus on 2008-10-28 08:59:26 as ** along with 3 people Hosna ceciklein elfar
  • EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments.
    Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006)
    posted to pipeline est by druvus on 2008-10-16 10:03:26 as **
  • High-throughput bioinformatics with the Cyrille2 pipeline system
    BMC Bioinformatics, Vol. 9 (12 February 2008), 96.
    by Mark WEJ Fiers, Ate van der Burgt, Erwin Datema, Joost CW de Groot, Roeland CHJ van Ham
    posted to wms pipeline by druvus on 2008-11-04 09:23:52 as ** along with 4 people orzenil operon guhjy dullhunk
  • EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration
    BMC Bioinformatics, Vol. 9 (07 January 2008), 5.
    by Javier Forment, Francisco Gilabert, Antonio Robles, Vicente Conejero, Fernando Nuez, Jose M Blanca
    posted to pipeline est by druvus on 2008-10-16 10:07:01 as ** along with 2 people natstreet guhjy
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