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Tag peptides [238 articles]

Recent papers classified by the tag peptides.
  • Nitrogen-14 solid-state NMR spectroscopy of aligned phospholipid bilayers to probe peptide-lipid interaction and oligomerization of membrane associated peptides.
    Journal of the American Chemical Society, Vol. 130, No. 33. (20 August 2008), pp. 11023-11029.
    by A Ramamoorthy, DK Lee, JS Santos, KA Henzler-Wildman
    posted to ssnmr peptides membrane lipid by viktor21614 on 2008-10-21 20:43:08 as ** along with 1 person paulschlesinger
  • Role of antimicrobial peptides in host defense against mycobacterial infections
    Peptides, Vol. In Press, Accepted Manuscript
    by Patricia Méndez-Samperio
    posted to mycobacterium peptides tuberculosis by viktor21614 on 2008-07-08 15:52:30 as **
  • Molecular dynamics study of substance P peptides partitioned in a sodium dodecylsulfate micelle.
    Biophys J, Vol. 76, No. 3. (March 1999), pp. 1213-1227.
    by T Wymore, TC Wong
    posted to micelles peptides sds by softsimu on 2007-12-18 01:31:57 as ** along with 1 person fjc1
  • Bilayer interfacial properties modulate the binding of amphipathic peptides
    Chem. Phys. Lipids, Vol. 122, No. 1-2. (2003), pp. 65-76.
    by D Allende, A Vidal, SA Simon, TJ Mcintosh
    posted to membranes peptides by softsimu on 2007-12-12 14:14:03 as **
  • Exploring the free-energy landscape of a short peptide using an average force
    The Journal of Chemical Physics, Vol. 123, No. 24. (2005)
    by Christophe Chipot, Jérôme Hénin
    posted to abf free-energy peptides by softsimu on 2007-12-12 23:04:26 as **
  • Transmembrane Peptide-Induced Lipid Sorting and Mechanism of Lalpha-to-Inverted Phase Transition Using Coarse-Grain Molecular Dynamics
    Biophys. J., Vol. 87, No. 4. (1 October 2004), pp. 2107-2115.
    by Steve O Nielsen, Carlos F Lopez, Ivaylo Ivanov, Preston B Moore, John C Shelley, Michael L Klein
    posted to coarse-graining peptides by softsimu on 2008-03-18 18:53:51 as **
  • Molecular Dynamics Simulations of Model Trans-Membrane Peptides in Lipid Bilayers: A Systematic Investigation of Hydrophobic Mismatch
    Biophys. J., Vol. 90, No. 7. (1 April 2006), pp. 2326-2343.
    by Senthil K Kandasamy, Ronald G Larson
    posted to peptides trans-membrane by softsimu on 2008-06-19 22:23:56 as ** along with 2 people and 1 group anita divadyrral structure-bii
  • Simulations of a Membrane-Anchored Peptide: Structure, Dynamics, and Influence on Bilayer Properties
    Biophys. J., Vol. 86, No. 6. (1 June 2004), pp. 3556-3575.
    by Morten O Jensen, Ole G Mouritsen, Gunther H Peters
    posted to peptides by softsimu on 2008-03-18 19:14:50 as **
  • Nonpolar interactions between trans-membrane helical EGF peptide and phosphatidylcholines, sphingomyelins and cholesterol. Molecular dynamics simulation studies
    Journal of Peptide Science, Vol. 14, No. 4. (2008), pp. 374-382.
    by Tomasz Róg, Krzysztof Murzyn, Mikko Karttunen, Marta Pasenkiewicz-Gierula
    posted to cholesterol egf peptides popc by softsimu on 2008-03-17 14:55:33 as **
  • NMR and molecular modeling investigations of the neuropeptide substance P in the presence of 15 mM sodium dodecyl sulfate micelles.
    Biopolymers, Vol. 34, No. 11. (November 1994), pp. 1449-1462.
    by JK Young, C Anklin, RP Hicks
    posted to micelles peptides sds by softsimu on 2007-12-18 01:31:08 as ** along with 1 person fjc1
  • Interaction of indole derivatives and tryptophan peptides with interfaces of sodium dodecyl sulfate micelles
    Journal of Peptide Science, Vol. 12, No. 6. (2006), pp. 403-411.
    by Takeyoshi Imamura, Kazue Konishi, Katsutoshi Konishi
    posted to micelles peptides sds by softsimu on 2007-12-18 01:22:21 as ** along with 1 person loison
  • An introduction to peptide nucleic acid.
    Curr Issues Mol Biol, Vol. 1, No. 1-2. (1999), pp. 89-104.
    by PE Nielsen, M Egholm
    posted to dna peptides pna by softsimu on 2007-12-12 23:51:44 as **
  • Peptide free-energy profile is strongly dependent on the force field: Comparison of C96 and AMBER95
    Journal of Computational Chemistry, Vol. 21, No. 9. (2000), pp. 748-762.
    by Satoshi Ono, Nobuyuki Nakajima, Junichi Higo, Haruki Nakamura
    posted to amber force-field peptides by softsimu on 2008-04-03 22:17:27 as **
  • Energetics of Ion Transport in a Peptide Nanotube
    J. Phys. Chem. B (18 August 2007)
    by F Dehez, M Tarek, C Chipot
    posted to abf free-energy nanotubes peptides by softsimu on 2007-12-12 23:11:54 as ** along with 1 person paulschlesinger
  • Molecular Dynamics Simulations of Micelle Formation around Dimeric Glycophorin A Transmembrane Helices
    Biophys. J., Vol. 87, No. 2. (1 August 2004), pp. 754-763.
    by Rosemary Braun, Donald M Engelman, Klaus Schulten
    posted to micelles peptides sds by softsimu on 2007-12-18 01:28:05 as ** along with 1 person loison
  • Radiolabeled somatostatin analog [177Lu-DOTA0,Tyr3]octreotate in patients with endocrine gastroenteropancreatic tumors.
    J Clin Oncol, Vol. 23, No. 12. (20 April 2005), pp. 2754-2762.
    by DJ Kwekkeboom, JJ Teunissen, WH Bakker, PP Kooij, WW de Herder, RA Feelders, CH van Eijck, JP Esser, BL Kam, EP Krenning
    posted to clinical lu-177 peptides by smather on 2005-05-03 16:08:13 as ***
  • Candidates for peptide receptor radiotherapy today and in the future.
    J Nucl Med, Vol. 46 Suppl 1 (January 2005)
    by JC Reubi, HR Mäcke, EP Krenning
    posted to ligands peptides by smather on 2005-05-03 15:47:31 as ***
  • Histatins, a novel family of histidine-rich proteins in human parotid secretion. Isolation, characterization, primary structure, and fungistatic effects on Candida albicans.
    J Biol Chem, Vol. 263, No. 16. (5 June 1988), pp. 7472-7477.
    by FG Oppenheim, T Xu, FM McMillian, SM Levitz, RD Diamond, GD Offner, RF Troxler
    posted to natural-products peptides by robert on 2008-01-29 10:15:24 as **
  • Anti-apoptotic Bcl-X(L) protein in complex with BH3 peptides of pro-apoptotic Bak, Bad, and Bim proteins: Comparative molecular dynamics simulations.
    Proteins (1 May 2008)
    by Dilraj Lama, Ramasubbu Sankararamakrishnan
    posted to bad bak bclxl bh3 bim peptides simulation by paulschlesinger on 2008-07-19 00:19:08 as **
  • Amyloid toxicity is independent of polypeptide sequence, length and chirality
    Journal of Molecular Biology, Vol. In Press, Accepted Manuscript
    by Teresa M Pastor, Nico Kummerer, Vanessa Schubert, Alexandra Esteras-Chopo, Carlos G Dotti, de La, Luis Serrano
    posted to amyloid membrane peptides by paulschlesinger on 2007-08-23 00:11:30 as *** along with 1 person and 1 group wsjames Oxford Virology
  • Membrane Binding of pH-Sensitive Influenza Fusion Peptides. Positioning, Configuration, and Induced Leakage in a Lipid Vesicle Model
    Biochemistry (1 November 2007)
    by EK Esbjorner, K Oglecka, P Lincoln, A Graslund, B Norden
    posted to binding membrane peptides by paulschlesinger on 2007-11-06 18:35:16 as **
  • Molecular interactions of peptides with phospholipid vesicle membranes as studied by fluorescence correlation spectroscopy
    Chemistry and Physics of Lipids, Vol. 104, No. 1. (January 2000), pp. 35-47.
    by Aladdin Pramanik, Per Thyberg, Rudolf Rigler
    posted to pramni99pdf peptides liposomes interaction fcs by paulschlesinger on 2008-09-08 17:45:24 as **
  • Modulation of the Spontaneous Curvature and Bending Rigidity of Lipid Membranes by Interfacially Adsorbed Amphipathic Peptides
    J. Phys. Chem. B (14 May 2008)
    by Assaf Zemel, Avinoam Ben-Shaul, Sylvio May
    posted to absorption curvature interfacial membrane peptides by paulschlesinger on 2008-05-20 01:16:32 as **
  • Hydrophobic Substitutions in the First Residue of the CRAC Segment of the gp41 Protein of HIV
    Biochemistry (15 December 2007)
    by SA Vishwanathan, A Thomas, R Brasseur, RF Epand, E Hunter, RM Epand
    posted to crac peptides simulation by paulschlesinger on 2007-12-18 20:29:29 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Structural constraints on the transmembrane and juxtamembrane regions of the phospholamban pentamer in membrane bilayers: Gln29 and Leu52
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. In Press, Accepted Manuscript
    by Wei Liu, Jeffrey Z Fei, Toru Kawakami, Steven O Smith
    posted to membrane peptides structure by paulschlesinger on 2007-10-23 19:10:22 as **
  • Influence of Antimicrobial Peptides on the Formation of Nonlamellar Lipid Mesophases
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. In Press, Accepted Manuscript
    by Andrea Hickel, Sabine Danner-Pongratz, Heinz Amenitsch, Gabor Degovics, Michael Rappolt, Karl Lohner, Georg Pabst
    posted to antimicrobial hickel08pdf lipids nonlamellar peptides by paulschlesinger on 2008-06-07 00:41:49 as **
  • Poliovirus 2B insertion into lipid monolayers and pore formation in vesicles modulated by anionic phospholipids
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. In Press, Accepted Manuscript
    by Aitziber Agirre, Maier Lorizate, Shlomo Nir, José L Nieva
    posted to foramtion insertion membrane peptides pore by paulschlesinger on 2008-06-27 01:09:45 as **
  • Amphitropic proteins: regulation by reversible membrane interactions (Review)
    Molecular Membrane Biology, Vol. 16, No. 3. (1999), pp. 217-235.
    by Joanne E Johnson, Rosemary B Cornell
    posted to binding membrane peptides by paulschlesinger on 2008-07-11 00:21:09 as **
  • Mitochondria-penetrating peptides.
    Chemistry & biology, Vol. 15, No. 4. (April 2008), pp. 375-382.
    by KL Horton, KM Stewart, SB Fonseca, Q Guo, SO Kelley
    posted to mitochondria penetrating peptides by paulschlesinger on 2008-05-31 01:13:16 as **
  • Membrane interactions of antimicrobial peptides from Australian frogs
    Biochimica et Biophysica Acta (BBA) - Biomembranes (25 October 2008)
    by D Fernandez, J Gehman, F Separovic
    posted to peptides frogs fernan08pdf antimicrobial by paulschlesinger on 2008-10-29 01:31:33 as **
  • Protection against beta-Amyloid-induced Apoptosis by Peptides Interacting with beta-Amyloid
    J. Biol. Chem., Vol. 282, No. 43. (26 October 2007), pp. 31238-31249.
    by Thomas J Nelson, Daniel L Alkon
    posted to amyloid apoptosis peptides by paulschlesinger on 2007-10-19 18:52:15 as **
  • Mechanism and kinetics of pore formation in membranes by water-soluble amphipathic peptides
    Proceedings of the National Academy of Sciences, Vol. 105, No. 13. (1 April 2008), pp. 5087-5092.
    by Ming-Tao Lee, Wei-Chin Hung, Fang-Yu Chen, Huey W Huang
    posted to amphipatic formation peptides pore by paulschlesinger on 2008-04-16 20:12:11 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Cell penetrating peptides: intracellular pathways and pharmaceutical perspectives.
    Pharmaceutical research, Vol. 24, No. 11. (November 2007), pp. 1977-1992.
    by LN Patel, JL Zaro, WC Shen
    posted to cell delivery membrane patel07pdf peptides by paulschlesinger on 2008-06-02 22:42:14 as **
  • Probing structure and function of VLDL by synthetic amphipathic helical peptides
    J. Lipid Res., Vol. 37, No. 5. (1 May 1996), pp. 1099-1112.
    by BH Chung, MN Palgunachari, VK Mishra, CH Chang, JP Segrest, GM Anantharamaiah
    posted to vldl peptides metabolism chung96pdf by paulschlesinger on 2008-09-26 19:18:58 as **
  • Pony express to mitochondria
    Nat Meth, Vol. 5, No. 6. (June 2008), pp. 468-468.
    by Irene Kaganman
    posted to kagan08pdf mitochondria peptides targeting by paulschlesinger on 2008-05-31 00:26:34 as **
  • Identification of Peptide Ligands for Target RNA Structures Derived from the HIV-1 Packaging Signal
    ChemBioChem, Vol. 4, No. 10. (26 September 2003), pp. 1093-1097.
    by Anette Pustowka, Julia Dietz, Jan Ferner, Michael Baumann, Dr, Margot Landersz, Christoph Königs, Harald Schwalbe, Dr, Ursula Dietrich, Dr
    posted to display hiv-1 interactions packaging peptides phage rna rna-peptide by P2324548 on 2005-06-08 15:30:08 as **
  • Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry.
    Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008)
    by L Käll, JD Storey, WS Noble
    posted to identification ms peptides by nuin on 2008-08-12 18:10:46 as **
  • Peptides Selected to Bind the Gal80 Repressor Are Potent Transcriptional Activation Domains in Yeast
    J. Biol. Chem., Vol. 275, No. 20. (12 May 2000), pp. 14979-14984.
    by Ying Han, Thomas Kodadek
    posted to gal80 peptides repressor transcription yeast by mapplab on 2008-08-14 20:58:22 as ** along with 1 person amwands
  • Assessing the permissiveness of transcriptional activator binding sites
    Biopolymers, Vol. 89, No. 7. (2008), pp. 578-581.
    by Steven P Rowe, Anna K Mapp
    posted to activator binding-study b-peptides kix peptides peptoids transcription by mapplab on 2008-07-21 20:43:44 as **
  • Artificial Transcriptional Activation Domains
    ChemBioChem, Vol. 6, No. 8. (2005), pp. 1311-1315.
    by Jenifer K Lum, Anna K Mapp
    posted to activator peptides yeast by mapplab on 2008-07-21 20:35:11 as read
  • Targeting the Transcriptional Machinery with Unique Artificial Transcriptional Activators
    J. Am. Chem. Soc., Vol. 125, No. 41. (15 October 2003), pp. 12390-12391.
    by Z Wu, G Belanger, BB Brennan, JK Lum, AR Minter, SP Rowe, A Plachetka, CY Majmudar, AK Mapp
    posted to activator binding-study med15gal11 peptides protein-protein by mapplab on 2008-07-21 20:38:04 as **
  • Functional Specificity of Artificial Transcriptional Activators
    Chemistry & Biology, Vol. 12, No. 3. (March 2005), pp. 313-321.
    by Chinmay Y Majmudar, Jenifer K Lum, Lev Prasov, Anna K Mapp
    posted to activator med15gal11 peptides synergy by mapplab on 2008-07-21 20:36:18 as **
  • Converting Inactive Peptides into Potent Transcriptional Activators
    ACS Chem. Biol., Vol. 1, No. 10. (17 November 2006), pp. 639-643.
    by Jenifer K Lum, Chinmay Y Majmudar, Aseem Z Ansari, Anna K Mapp
    posted to activator gal4 peptides by mapplab on 2008-07-21 20:32:46 as read
  • Towards a minimal motif for artificial transcriptional activators
    Chemistry & Biology, Vol. 8, No. 6. (June 2001), pp. 583-592.
    by Aseem Z Ansari, Anna K Mapp, Doan H Nguyen, Peter B Dervan, Mark Ptashne
    posted to activator peptides polyamide synthetic-activator transcription by mapplab on 2008-07-21 20:41:03 as **
  • Disrupting Mediator with a Short Peptide Ligand
    ChemBioChem, Vol. 8, No. 11. (2007), pp. 1233-1236.
    by Jenifer K Lum, Zhiqian Wu, Anna K Mapp
    posted to med15gal11 mediator peptides by mapplab on 2008-07-21 20:29:59 as **
  • Activation of gene expression by small molecule transcription factors.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 8. (11 April 2000), pp. 3930-3935.
    by AK Mapp, AZ Ansari, M Ptashne, PB Dervan
    posted to activator peptides polyamide synthetic-activator transcription by mapplab on 2008-07-21 20:40:17 as **
  • Monte Carlo simulations of flexible molecules in a static electric field: electric dipole and conformation
    Chemical Physics Letters, Vol. 401, No. 1-3. (1 January 2005), pp. 1-6.
    by P Poulain, R Antoine, M Broyer, P Dugourd
    posted to lasim mc peptides simulations by loison on 2006-12-22 10:20:13 as ***
  • How to Model Solvation of Peptides? Insights from a Quantum-mechanical and Molecular Dynamics Study of N-Methylacetamide. 1. Geometries, Infrared, and Ultraviolet Spectra in Water
    J. Phys. Chem. B, Vol. 109, No. 19. (19 May 2005), pp. 9818-9829.
    by B Mennucci, JM Martinez
    posted to peptides solvation theory by loison on 2008-06-24 13:42:53 as **
  • Tryptophan Rotamer Distributions in Amphipathic Peptides at a Lipid Surface
    Biophys. J., Vol. 76, No. 6. (1 June 1999), pp. 3235-3242.
    by Andrew H Clayton, William H Sawyer
    posted to peptides tryptophan by loison on 2008-05-20 08:56:40 as **
  • Entropic Stabilization of Isolated <img src="http://pubs.acs.org/images/gifchars/beta2.gif" border="0" align="middle">-Sheets
    J. Am. Chem. Soc., Vol. 127, No. 13. (6 April 2005), pp. 4675-4679.
    by P Dugourd, R Antoine, G Breaux, M Broyer, MF Jarrold
    posted to electricdipole experiments lasim peptides by loison on 2006-12-22 10:13:50 as ***
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