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Tag peptide [273 articles]

Recent papers classified by the tag peptide.
  • Interactions between branched DNAs and peptide inhibitors of DNA repair
    Nucl. Acids Res., Vol. 36, No. 16. (1 September 2008), pp. 5319-5334.
    by Kevin V Kepple, Namita Patel, Peter Salamon, Anca M Segall
    posted to protein peptide interaction dna by zwang on 2008-09-09 12:50:58 as **
  • Novel peptide identification from tandem mass spectra using ESTs and sequence database compression
    Mol Syst Biol, Vol. 3 (17 April 2007)
    by Nathan J Edwards
    posted to peptide massspectrometry by zwang on 2007-04-17 17:32:23 as * along with 1 person nedwards
  • Unfolding the fold of cyclic cysteine-rich peptides
    Protein Sci, Vol. 17, No. 3. (1 March 2008), pp. 482-493.
    by Amarda Shehu, Lydia E Kavraki, Cecilia Clementi
    posted to folding peptide by zwang on 2008-02-22 12:49:50 as *
  • Imaging mass spectrometry of proteins and peptides: 3D volume reconstruction
    Nature Methods, Vol. 5, No. 1., pp. 101-108.
    by Malin Andersson, Reid M Groseclose, Ariel Y Deutch, Richard M Caprioli
    posted to massspectrometry peptide protein protocol by zwang on 2007-12-30 15:28:43 as **** along with 1 person guhjy
  • Bioinformatic discovery of novel bioactive peptides
    Nat Chem Biol, Vol. 3, No. 2. (February 2007), pp. 108-112.
    by Richard J Edwards, Niamh Moran, Marc Devocelle, Aoife Kiernan, Gerardene Meade, William Signac, Martina Foy, Stephen D Park, Eimear Dunne, Dermot Kenny, Denis C Shields
    posted to peptide by zwang on 2007-04-16 13:09:47 as * along with 1 person Evangelia
  • Structure Prediction of Domain Insertion Proteins from Structures of Individual Domains
    Structure, Vol. 16, No. 4. (8 April 2008), pp. 513-527.
    by Monica Berrondo, Marc Ostermeier, Jeffrey J Gray
    posted to structure prediction peptide domain by zwang on 2008-11-12 01:40:59 as **** along with 2 people raik choonpeng
  • Computational Design of Peptides That Target Transmembrane Helices
    Science, Vol. 315, No. 5820. (30 March 2007), pp. 1817-1822.
    by Hang Yin, Joanna S Slusky, Bryan W Berger, Robin S Walters, Gaston Vilaire, Rustem I Litvinov, James D Lear, Gregory A Caputo, Joel S Bennett, William F Degrado
    posted to design peptide transmembrane by zwang on 2007-03-31 04:43:12 as ** along with 5 people hc5428 chad_davis xxh0541 Evangelia chgjb
  • A new peptide docking strategy using a mean field technique with mutually orthogonal Latin square sampling
    Journal of Computer-Aided Molecular Design, Vol. 22, No. 11. (1 November 2008), pp. 815-829.
    by Arun, N Gautham
    posted to sampling peptide mols docking conformation by zimbo1 on 2008-10-02 08:35:57 as **
  • Do T cells need endogenous peptides for activation?
    Nat Rev Immunol, Vol. 8, No. 11. (November 2008), pp. 895-900.
    by Nicholas R Gascoigne
    posted to thesis t-cells review peptide endogenous activation by Zephyrus on 2008-10-24 17:52:48 as ** along with 1 person sg45653
  • Theoretical Analysis of Secondary Structures of β-Peptides
    Acc. Chem. Res. (2 October 2008)
    by Yun-Dong Wu, Wei Han, De-Ping Wang, Yi Gao, Yi-Lei Zhao
    posted to peptide by yzlab on 2008-10-19 03:36:03 as ** along with 1 person paulschlesinger
  • Exploring β-Sheet Structure and Interactions with Chemical Model Systems
    Acc. Chem. Res. (18 September 2008)
    by James S Nowick
    posted to peptide by yzlab on 2008-10-19 03:37:06 as ** along with 1 person higueruelo
  • A linguistic model for the rational design of antimicrobial peptides
    Nature, Vol. 443, No. 7113., pp. 867-869.
    by Christopher Loose, Kyle Jensen, Isidore Rigoutsos, Gregory Stephanopoulos
    posted to bioactive disease method naturalproducts peptide by Yanno on 2006-10-19 17:18:05 as read along with 9 people and 1 group apostola niallhaslam okarsligil dayjm mtagaya madhadron pjkiley shabib loison Bioinformatics
  • Identification of the Binding Sites of the SR49059 Nonpeptide Antagonist into the V1a Vasopressin Receptor Using Sulfydryl-reactive Ligands and Cysteine Mutants as Chemical Sensors
    J. Biol. Chem., Vol. 278, No. 41. (10 October 2003), pp. 40010-40019.
    by Chouaib Tahtaoui, Marie-Noelle Balestre, Philippe Klotz, Didier Rognan, Claude Barberis, Bernard Mouillac, Marcel Hibert
    posted to binding cys_scanning peptide vasopressin by xdeupi on 2008-02-28 16:16:02 as **
  • Prosystemin-antimicrobial-peptide fusion reduces tomato late blight lesion expansion
    Molecular Breeding, Vol. 14, No. 1. (2004), pp. 83-89.
    by Richard W Jones, Manuel Ospina-Giraldo, Thomas Clemente
    posted to antimicrobial peptide by wxg119 on 2006-06-14 21:32:31 as **
  • Tuning the membrane surface potential for efficient toxin import
    Proceedings of the National Academy of Sciences, Vol. 99, No. 13. (25 June 2002), pp. 8654-8659.
    by Stanislav D Zakharov, Tatyana I Rokitskaya, Vladimir L Shapovalov, Yuri N Antonenko, William A Cramer
    posted to cardiolipin peptide toxin by softsimu on 2008-05-01 21:46:56 as **
  • NITPICK: peak identifcation for mass spectrometry data
    BMC Bioinformatics, Vol. 9 (28 August 2008), 355.
    by Bernhard Y Renard, Marc Kirchner, Hanno Steen, Judith AJ Steen, Fred A Hamprecht
    posted to peptide-mass-fingerprint peptide mass-spectrometry by sjcockell on 2008-09-17 10:19:35 as ** along with 2 people nuin guhjy
  • Molecular mechanism for stabilizing a short helical peptide studied by generalized-ensemble simulations with explicit solvent.
    Biophys J, Vol. 88, No. 5. (May 2005), pp. 3180-3190.
    by Y Sugita, Y Okamoto
    posted to folding peptide by rulix on 2008-01-20 18:33:46 as ***** along with 2 people bilab jvf666
  • Solution effects and the order of the helix--coil transition in polyalanine
    The Journal of Chemical Physics, Vol. 118, No. 5. (2003), pp. 2374-2380.
    by Yong Peng, Ulrich HE Hansmann, Nelson A Alves
    posted to folding peptide polyalanine by rulix on 2008-01-20 18:19:56 as *****
  • NMR Solution Structure and Membrane Interaction of the N-Terminal Sequence (1-30) of the Bovine Prion Protein
    Biochemistry, Vol. 43, No. 47. (30 November 2004), pp. 14940-14947.
    by H Biverstahl, A Andersson, A Graslund, L Maler
    posted to bicelles diffusion micelles nmr peptide by rph on 2008-03-25 01:52:34 as *
  • NMR solution structure and position of transportan in neutral phospholipid bicelles.
    FEBS Lett, Vol. 567, No. 2-3. (4 June 2004), pp. 265-269.
    by E Bárány-Wallje, A Andersson, A Gräslund, L Mäler
    posted to bicelles detergents nmr peptide by rph on 2008-03-13 18:26:21 as **
  • Amyloid beta -peptide inhibition of the PKA/CREB pathway and long-term potentiation: reversibility by drugs that enhance cAMP signaling.
    Proc Natl Acad Sci U S A, Vol. 99, No. 20. (1 October 2002), pp. 13217-13221.
    by OV Vitolo, A Sant'Angelo, V Costanzo, F Battaglia, O Arancio, M Shelanski
    posted to amyloid beta creb dementia forskolin peptide phosphodiesterase by PeterDAdamo on 2006-07-28 15:01:17 as ** along with 3 groups Boydian_Society Nutritional_Polymorphisms The_Individualist
  • A Simple Approach to Well-Defined Sugar-Coated Surfaces for Interaction Studies
    ChemBioChem, Vol. 6, No. 10. (2005), pp. 1831-1838.
    by Miquel Vila-Perelló, Ricardo G Gallego, David Andreu
    posted to carbohydrate interaction peptide spr by pedromts on 2008-08-20 17:53:11 as ****
  • Interaction of peptides with biomembranes assessed by potential-sensitive fluorescent probes
    Journal of Peptide Science, Vol. 14, No. 4. (2008), pp. 407-415.
    by Pedro M Matos, Sónia Gonçalves, Nuno C Santos
    posted to review probe potentials peptide membrane interaction fluorescence by pedromts on 2008-11-28 18:06:59 as read
  • Structure of transmembrane pore induced by Bax-derived peptide: Evidence for lipidic pores.
    Proceedings of the National Academy of Sciences of the United States of America (5 November 2008)
    by Shuo Qian, Wangchen Wang, Lin Yang, Huey W W Huang
    posted to volume transmembrane qian08pdf pore peptide membrane bax area by paulschlesinger on 2008-11-07 20:11:42 as **
  • The impact of peptides on lipid membranes
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. In Press, Accepted Manuscript
    by Himanshu Khandelia, John H Ipsen, Ole G Mouritsen
    posted to interface membrane peptide structure by paulschlesinger on 2008-03-05 21:17:15 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Peptide Aggregation in Finite Systems
    Biophys. J., Vol. 95, No. 7. (1 October 2008), pp. 3208-3221.
    by Gurpreet Singh, Ivan Brovchenko, Alla Oleinikova, Roland Winter
    posted to theory singh08pdf peptide aggregation by paulschlesinger on 2008-09-24 01:02:23 as ** along with 1 person agrossfield
  • Incorporation of Transmembrane Peptides from the Vacuolar H+-ATPase in Phospholipid Membranes: Spin-Label Electron Paramagnetic Resonance and Polarized Infrared Spectroscopy
    Biochemistry (29 February 2008)
    by K&#xf3, Zolt&#xe1 Ta, , P&#xe1, Tibor Li, Neil Dixon, Terry P Kee, Michael A Harrison, John B Findlay, Malcolm E Finbow, Derek Marsh
    posted to incorporation membrane peptide proton pump by paulschlesinger on 2008-03-01 00:04:55 as **
  • Hydrophobic Mismatch between Helices and Lipid Bilayers
    Biophys. J., Vol. 84, No. 1. (1 January 2003), pp. 379-385.
    by Thomas M Weiss, Patrick C van der Wel, Antoinette J Killian, Roger E Koeppe, Huey W Huang
    posted to weiss03pdf protein peptide mismatch membrane lipid by paulschlesinger on 2008-09-22 18:46:48 as **
  • Interaction of an artificial antimicrobial peptide with lipid membranes
    Biochimica et Biophysica Acta (BBA) - Biomembranes (25 October 2008)
    by L Yu, L Guo, J Ding, B Ho, S Feng, J Popplewell, M Swann, T Wohland
    posted to yu08pdf synthetic peptide membranes lipid antimicrobial by paulschlesinger on 2008-10-29 01:21:04 as **
  • Structures of Rat and Human Islet Amyloid Polypeptide IAPP1−19 in Micelles by NMR Spectroscopy
    Biochemistry (7 November 2008)
    by Ravi P Nanga, Jeffrey R Brender, Jiadi Xu, Gianluigi Veglia, Ayyalusamy Ramamoorthy
    posted to strucutre peptide nanga08pdf micelles islet amiloid by paulschlesinger on 2008-11-07 23:08:13 as **
  • Structure of the Alamethicin Pore Reconstructed by X-ray Diffraction Analysis
    Biophys. J. (16 January 2008), biophysj.107.126474.
    by Shuo Qian, Wangchen Wang, Lin Yang, Huey W Huang
    posted to membranes peptide pore by paulschlesinger on 2008-01-24 20:42:07 as ** along with 1 person agrossfield
  • Effect of Antimicrobial Peptides from Australian Tree Frogs on Anionic Phospholipid Membranes
    Biochemistry (25 July 2008)
    by John D Gehman, Fiona Luc, Kristopher Hall, Tzong-Hsien Lee, Martin P Boland, Tara L Pukala, John H Bowie, Marie-Isabel Aguilar, Frances Separovic
    posted to antimicrobial frog gehman08pdf membrane peptide tree by paulschlesinger on 2008-08-10 02:55:51 as ** along with 1 person agrossfield
  • Melittin: a membrane-active peptide with diverse functions.
    Bioscience reports, Vol. 27, No. 4-5. (October 2007), pp. 189-223.
    by H Raghuraman, A Chattopadhyay
    posted to raghur07pdf peptide membrane melittin active by paulschlesinger on 2008-10-20 23:47:29 as **
  • Interactions of Cationic-Hydrophobic Peptides with Lipid Bilayers: A Monte Carlo Simulation Method
    Biophys. J., Vol. 93, No. 6. (15 September 2007), pp. 1858-1871.
    by Dalit Shental-Bechor, Turkan Haliloglu, Nir Ben-Tal
    posted to energetics membrane peptide simulation by paulschlesinger on 2007-12-18 01:37:19 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Coarse-grained simulation studies of peptide-induced pore formation
    Biophys. J. (18 July 2008), biophysj.108.131300.
    by Gregoria Illya, Markus Deserno
    posted to simulation pore peptide mechanisn illya08pdf formation analysis by paulschlesinger on 2008-08-12 23:12:18 as ** along with 1 person agrossfield
  • Cholesterol, lanosterol, and ergosterol attenuate the membrane association of LL-37(W27F) and temporin L
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. In Press, Accepted Manuscript
    by Rohit Sood, Paavo K Kinnunen
    posted to binding integration membrane peptide by paulschlesinger on 2008-03-06 20:23:58 as ** along with 1 person Terkko
  • Computationally Designed Peptide Inhibitors of Protein−Protein Interactions in Membranes
    Biochemistry (22 July 2008)
    by Gregory A Caputo, Rustem I Litvinov, Wei Li, Joel S Bennett, William F Degrado, Hang Yin
    posted to caputo08pdf inhibitors interaction membrane peptide by paulschlesinger on 2008-08-10 03:00:13 as **
  • Small Changes in the Primary Structure of Transportan 10 Alter the Thermodynamics and Kinetics of its Interaction with Phospholipid Vesicles
    Biochemistry (9 February 2008)
    by Lindsay E Yandek, Antje Pokorny, Paulo F Almeida
    posted to membrane peptide thermodynamics transportan by paulschlesinger on 2008-02-13 19:38:47 as **
  • Fluorescent sterols monitor cell penetrating peptide Pep-1 mediated uptake and intracellular targeting of cargo protein in living cells
    Biochimica et Biophysica Acta (BBA) - Biomembranes (17 October 2008)
    by A Petrescu, A Vespa, H Huang, A Mcintosh, F Schroeder, A Kier
    posted to vespa08pdf sterol peptide penetration fluorescent by paulschlesinger on 2008-10-20 01:08:22 as **
  • Membrane Interactions of Cell-Penetrating Peptides Probed by Tryptophan Fluorescence and Dichroism Techniques: Correlations of Structure to Cellular Uptake
    Biochemistry, Vol. 45, No. 24. (20 June 2006), pp. 7682-7692.
    by CEB Caesar, EK Esbjorner, P Lincoln, B Norden
    posted to membrane penetration peptide tryptophan by paulschlesinger on 2008-07-21 18:04:48 as ** along with 1 person dereich
  • ALZHEIMER'S DISEASE: Fresh Evidence Points to an Old Suspect: Calcium
    Science, Vol. 318, No. 5849. (19 October 2007), pp. 384-385.
    by Jean Marx
    posted to channel ion membrane peptide by paulschlesinger on 2007-10-19 00:22:05 as read
  • Solvent Electrostriction-Driven Peptide Folding Revealed by Quasi-Gaussian Entropy Theory and Molecular Dynamics Simulation
    J. Phys. Chem. B (12 August 2008)
    by Frank Noé, Isabella Daidone, Jeremy C Smith, Alfredo di Nola, Andrea Amadei
    posted to electrostatics folding noe08pdf peptide by paulschlesinger on 2008-08-16 00:36:55 as **
  • Studies on Anticancer Activities of Antimicrobial Peptides
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. In Press, Accepted Manuscript
    by David W Hoskin, Ayyalusamy Ramamoorthy
    posted to cancer membrne peptide by paulschlesinger on 2007-11-25 02:20:22 as ** along with 2 people and 1 group sobolevnrm loison baker-group
  • Structural characterization of the pore forming protein TatAd of the twin-arginine translocase in membranes by solid-state 15N-NMR
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. In Press, Accepted Manuscript
    by Sonja D Muller, Anna A De Angelis, Torsten H Walther, Stephan L Grage, Christian Lange, Stanley J Opella, Anne S Ulrich
    posted to membrane peptide by paulschlesinger on 2007-10-08 02:18:48 as **
  • Perturbation of Lipopolysaccharide (LPS) Micelles by Sushi 3 (S3) Antimicrobial Peptide: THE IMPORTANCE OF AN INTERMOLECULAR DISULFIDE BOND IN S3 DIMER FOR BINDING, DISRUPTION, AND NEUTRALIZATION OF LPS
    J. Biol. Chem., Vol. 279, No. 48. (26 November 2004), pp. 50150-50156.
    by Peng Li, Thorsten Wohland, Bow Ho, Jeak L Ding
    posted to fcs micelle peptide spr by paulschlesinger on 2008-07-29 18:55:35 as **
  • Peptides derived from BH3 domains of Bcl-2 family members: a comparative analysis of inhibition of Bcl-2, Bcl-x(L) and Bax oligomerization, induction of cytochrome c release, and activation of cell death.
    Biochemistry, Vol. 41, No. 30. (30 July 2002), pp. 9485-9495.
    by S Shangary, DE Johnson
    posted to bclxl bh3 expression over peptide tumor by paulschlesinger on 2008-07-19 00:20:43 as **
  • The Dynamic Orientation of Membrane-Bound Peptides: Bridging Simulations and Experiments
    Biophys. J., Vol. 93, No. 12. (15 December 2007), pp. 4278-4288.
    by Santi Esteban-Martin, Jesus Salgado
    posted to peptide orientation membrane esteb07pdf by paulschlesinger on 2008-09-22 19:28:47 as ** along with 1 person sunhwan
  • Folding Peptides into Lipid Bilayer Membranes
    J. Chem. Theory Comput. (3 October 2008)
    by Martin B Ulmschneider, Jakob P Ulmschneider
    posted to ulmsch08pdf peptide membranes folding by paulschlesinger on 2008-10-09 00:41:16 as ** along with 1 person agrossfield
  • Energetics of peptide (pHLIP) binding to and folding across a lipid bilayer membrane
    Proceedings of the National Academy of Sciences (2008)
    by Yana K Reshetnyak, Oleg A Andreev, Michael Segala, Vladislav S Markin, Donald M Engelman
    posted to reshet08pdf peptide membrane interaction folding by paulschlesinger on 2008-10-10 01:33:39 as ** along with 1 person agrossfield
  • Voltage-dependent energetics of alamethicin monomers in the membrane
    Biophysical Chemistry, Vol. 122, No. 1. (20 June 2006), pp. 50-57.
    by Madhusoodanan Mottamal, Themis Lazaridis
    posted to amphiphaths channel dpendence peptide voltage by paulschlesinger on 2007-12-18 01:28:29 as **
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