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Tag pathwayanalysis [17 articles]

Recent papers classified by the tag pathwayanalysis.
  • Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses
    Science (4 September 2008), 1164368.
    by Sian Jones, Xiaosong Zhang, Williams D Parsons, Jimmy C Lin, Rebecca J Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, Hirohiko Kamiyama, Antonio Jimeno, Seung-Mo Hong, Baojin Fu, Ming-Tseh Lin, Eric S Calhoun, Mihoko Kamiyama, Kimberly Walter, Tatiana Nikolskaya, Yuri Nikolsky, James Hartigan, Douglas R Smith, Manuel Hidalgo, Steven D Leach, Alison P Klein, Elizabeth M Jaffee, Michael Goggins, Anirban Maitra, Christine Iacobuzio-Donahue, James R Eshleman, Scott E Kern, Ralph H Hruban, Rachel Karchin, Nickolas Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E Velculescu, Kenneth W Kinzler
    posted to pathways pathwayanalysis by thomaskelder on 2008-10-20 14:31:51 as ** along with 13 people and 3 groups srp33 jfr whh98 roys cmzmasek fongkoh AlexanderPico SaraNasser renatomilani brianb shikin songpku giovenko ConklinLab GeneGo Roswell Cancer Crosstalk
  • Comparative Pathway Analyzer--a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms.
    Nucleic acids research (6 June 2008)
    by Sebastian Oehm, David Gilbert, Andreas Tauch, Jens Stoye, Alexander Goesmann
    posted to pathwayanalysis by thomaskelder on 2008-06-12 06:54:33 as ** along with 4 people maralena renatomilani guhjy beete
  • MassTRIX: mass translator into pathways.
    Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008)
    by K Suhre, P Schmitt-Kopplin
    posted to pathwayanalysis by thomaskelder on 2008-08-06 09:39:31 as ** along with 1 person guhjy
  • Incorporating gene networks into statistical tests for genomic data via a spatially correlated mixture model
    Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 404-411.
    by Peng Wei, Wei Pan
    posted to pathwayanalysis pathwaystatistics by thomaskelder on 2008-02-19 12:03:18 as * along with 1 person ptrobajo
  • Signature pathways identified from gene expression profiles in the human uterine cervix before and after spontaneous term parturition
    American Journal of Obstetrics and Gynecology, Vol. 197, No. 3. (September 2007), pp. 250.e1-250.e7.
    by Sonia S Hassan, Roberto Romero, Adi L Tarca, Sorin Draghici, Beth Pineles, Andrej Bugrim, Nahla Khalek, Natalia Camacho, Pooja Mittal, Bo H Yoon, Jimmy Espinoza, Chong J Kim, Yoram Sorokin, Malone
    posted to pathwayanalysis by thomaskelder on 2008-02-19 12:30:50 as **
  • A Global Pathway Crosstalk Network
    Bioinformatics (23 April 2008), btn200.
    by Yong Li, Pankaj Agarwal, Dilip Rajagopalan
    posted to networkanalysis pathwayanalysis pathways by thomaskelder on 2008-04-27 12:01:21 as *** along with 6 people maralena bootsy renatomilani AlexanderPico guhjy balicea
  • Exploring the metabolic and genetic control of gene expression on a genomic scale.
    Science, Vol. 278, No. 5338. (24 October 1997), pp. 680-686.
    by JL DeRisi, VR Iyer, PO Brown
    posted to pathwayanalysis microarray by thomaskelder on 2008-09-19 09:02:16 as ** along with 8 people and 3 groups macowell lfriedl lyongu fisherp raiyar incovoma dbenn michaelbarton kdl BUiGEM steinmetzlab
  • Pathway mapping tools for analysis of high content data.
    Methods in molecular biology (Clifton, N.J.), Vol. 356 (2007), pp. 319-350.
    by S Ekins, Y Nikolsky, A Bugrim, E Kirillov, T Nikolskaya
    posted to pathwayanalysis pathways pathwaytools by thomaskelder on 2008-05-04 10:38:02 as ***** along with 2 people and 1 group shikin AlexanderPico GeneGo
  • SPIKE - a database, visualization and analysis tool of cellular signaling pathways
    BMC Bioinformatics, Vol. 9 (20 February 2008), 110.
    by Ran Elkon, Rita Vesterman, Nira Amit, Igor Ulitsky, Idan Zohar, Mali Weisz, Gilad Mass, Nir Orlev, Giora Sternberg, Ran Blekhman, Jackie Assa, Yosef Shiloh, Ron Shamir
    posted to pathwayanalysis pathways by thomaskelder on 2008-02-26 10:21:29 as ***** along with 4 people guhjy renatomilani maralena AlexanderPico
  • Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.
    Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934.
    by T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, R Bumgarner, DR Goodlett, R Aebersold, L Hood
    posted to pathwayanalysis pathways systemsbiology by thomaskelder on 2008-05-13 09:58:29 as ** along with 11 people and 3 groups isimpson snuppepuppan BioGeek dragonrez bpb okarsligil opheliav wnpx gurkanbebek raiyar shikin Bioinformatics steinmetzlab GeneGo
  • The public road to high-quality curated biological pathways.
    Drug discovery today (21 July 2008)
    by Michiel E E Adriaens, Magali Jaillard, Andra Waagmeester, Susan L M L Coort, Alex R R Pico, Chris T A T Evelo
    posted to pathwayanalysis pathways by thomaskelder on 2008-07-28 07:17:43 as ** along with 5 people nicklynch jfr ptrobajo AlexanderPico guhjy
  • Building pathway clusters from Random Forests classification using class votes
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Herbert Pang, Hongyu Zhao
    posted to pathwayanalysis pathwaystatistics statistics by thomaskelder on 2008-02-07 08:35:19 as *** along with 4 people xtizon guhjy jfr AlexanderPico
  • A systems biology approach for pathway level analysis
    Genome Res. (4 September 2007), gr.6202607.
    by Sorin Draghici, Purvesh Khatri, Adi L Tarca, Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero
    posted to pathwayanalysis pathwaystatistics by thomaskelder on 2008-02-19 12:05:06 as read along with 17 people and 3 groups ptrobajo pengchy tmmurali dragonrez jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu shikin idonaldson Pao-Yang heliopais AlexanderPico Bioinformatics ParkinsonLab_at_MaRS OPIG
  • Identification of key processes underlying cancer phenotypes using biologic pathway analysis.
    PLoS ONE, Vol. 2, No. 5. (2007)
    by S Efroni, CF Schaefer, KH Buetow
    posted to pathwayanalysis by thomaskelder on 2008-08-25 09:57:46 as ** along with 6 people cswinburne ptrobajo dragonrez jfr AlexanderPico daed
  • GenMAPP 2: New Features and Resources for Pathway Analysis
    BMC Bioinformatics, Vol. 8 (24 June 2007), 217.
    by Nathan Salomonis, Kristina Hanspers, Alexander C Zambon, Karen Vranizan, Steven C Lawlor, Kam D Dahlquist, Scott W Doniger, Joshua M Stuart, Bruce R Conklin, Alexander R Pico
    posted to pathwayanalysis pathway microarray by thomaskelder on 2008-11-17 12:42:40 as ** along with 2 people and 1 group jfr AlexanderPico ConklinLab
  • Gene-set approach for expression pattern analysis
    Brief Bioinform (17 January 2008), bbn001.
    by Dougu Nam, Seon-Young Kim
    posted to pathwayanalysis pathways pathwaystatistics by thomaskelder on 2008-03-04 10:44:16 as ** along with 12 people ihpark ptrobajo guhjy seemu lp2 giovenko AlexanderPico heliopais tmmurali yas beete klo
  • A Novel Signaling Pathway Impact Analysis (SPIA)
    Bioinformatics (5 November 2008), btn577.
    by Adi L Tarca, Sorin Draghici, Purvesh Khatri, Sonia S Hassan, Pooja Mittal, Jung-Sun Kim, Chong J Kim, Juan P Kusanovic, Roberto Romero
    posted to pathwaystatistics pathwayanalysis by thomaskelder on 2008-11-17 10:42:31 as ** along with 3 people and 1 group AlexanderPico guhjy renatomilani ConklinLab
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