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Tag parsimony [59 articles]

Recent papers classified by the tag parsimony.
  • How should gaps be treated in parsimony? A comparison of approaches using simulation
    Molecular Phylogenetics and Evolution, Vol. 42, No. 3. (March 2007), pp. 817-826.
    by Heath T Ogden, Michael S Rosenberg
    posted to simulation parsimony indels gaps dna alignments accuracy 2007 by treangen on 2008-11-25 11:52:53 as ** along with 1 person TaqSys
  • Reconstructing evolution of sequences subject to recombination using parsimony.
    Mathematical biosciences, Vol. 98, No. 2. (March 1990), pp. 185-200.
    by J Hein
    posted to reconstruction recombination phylogeny parsimony hgt by treangen on 2008-11-25 18:50:02 as **
  • DupTree: A program for large-scale phylogenetic analyses using gene tree parsimony.
    Bioinformatics (Oxford, England) (12 May 2008)
    by André Wehe, Mukul S S Bansal, J Gordon G Burleigh, Oliver Eulenstein
    posted to software phylogeny phylogenetics parsimony large-scale gene evolution by treangen on 2008-11-21 09:36:27 as ** along with 3 people and 1 group operon tharris stajich Berkeley Mycology
  • Survival of the sparsest: robust gene networks are parsimonious
    Mol Syst Biol, Vol. 4 (2008)
    by Robert D Leclerc
    posted to robustgene parsimony network by sg45653 on 2008-09-05 23:01:29 as ** along with 6 people Borelli bootsy Retchless maralena bpcusack reyez
  • Direct maximum parsimony phylogeny reconstruction from genotype data
    BMC Bioinformatics, Vol. 8, No. 1. (2007), 472.
    by Srinath Sridhar, Fumei Lam, Guy Blelloch, R Ravi, Russell Schwartz
    posted to bio-tools parsimony phylogeny to-update by ryanraaum on 2007-12-05 17:53:23 as **
  • The Problem of Rooting Rapid Radiations
    Mol Biol Evol, Vol. 24, No. 11. (1 November 2007), pp. 2400-2411.
    by Liat Shavit, David Penny, Michael D Hendy, Barbara R Holland
    posted to adaptation diversification likelihood parsimony phylogeny radiation substitution-models by rvosa on 2007-11-28 02:49:08 as ** along with 1 group FAB-lab
  • Cases in which Parsimony or Compatibility Methods Will be Positively Misleading
    Systematic Zoology, Vol. 27, No. 4. (1978), pp. 401-410.
    by Joseph Felsenstein
    posted to characters inference methods parsimony phylogeny by rvosa on 2008-08-12 05:17:15 as ** along with 1 group FAB-lab
  • Parsimony, likelihood, and the role of models in molecular phylogenetics.
    Mol Biol Evol, Vol. 17, No. 6. (June 2000), pp. 839-850.
    by M Steel, D Penny
    posted to evolution likelihood parsimony by redelings on 2006-08-29 22:01:52 as ** along with 1 person bayesian
  • Dynamic homology and the likelihood criterion
    Cladistics, Vol. 22, No. 2. (2006), pp. 157-170.
    by Ward C Wheeler
    posted to evolution likelihood parsimony by redelings on 2006-08-29 21:22:33 as **
  • Parsimony analysis of endemicity and its application to animal and plant geographical distributions in the Ibero-Balearic region (western Mediterranean)
    Journal of Biogeography, Vol. 29, No. 1. (2002), pp. 109-124.
    by Enrique García-Barros, Pilar Gurrea, María J Luciáñez, José M Cano, Miguel L Munguira, Juan C Moreno, Helios Sainz, María J Sanz, Carlos J Simón
    posted to parsimony endemism analysis by mkjana on 2008-09-13 20:06:46 as **
  • Language Evolution and Information Theory
    Journal of Theoretical Biology, Vol. 205, No. 1. (7 July 2000), pp. 147-159.
    by Joshua B Plotkin, Martin A Nowak
    posted to communication error evolution informationtheory language parsimony by livingthingdan on 2007-03-29 12:03:25 as **** along with 3 people and 3 groups garyfeng voiklis chaosPanda ReadingLab livingthing ColDyn
  • Hindsight bias: How knowledge and heuristics affect our reconstruction of the past
    Memory, Vol. 11, No. 4-5. (2003), pp. 357-377.
    by R Hertwig, C Fanselow, U Hoffrage
    posted to folk heuristics memory mind parsimony by livingthingdan on 2007-03-22 03:31:56 as read along with 1 group livingthing
  • Genetic parsimony: a factor in the evolution of complexity, order and emergence
    pp. 295-308.
    by ARD Stebbing
    posted to complexity evolution genetic parsimony by livingthingdan on 2006-09-20 08:02:01 as ***** along with 1 group livingthing
  • notes Simple Heuristics That Make Us Smart
    by Gerd Gigerenzer, Peter M Todd, Abc_research_group
    posted to evolution mind parsimony rationality statistics by livingthingdan on 2006-12-05 05:29:04 as read along with 7 people and 3 groups MehdiMoussaid heintz dartar achiar ethicshare fabianhemmert mits folk_epistemology VirtualPatient livingthing
  • Reverse engineering of biological complexity.
    Science, Vol. 295, No. 5560. (1 March 2002), pp. 1664-1669.
    by ME Csete, JC Doyle
    posted to cell design intro metabolism parsimony by livingthingdan on 2006-09-21 03:15:09 as *** along with 18 people and 6 groups reyez camster snuppepuppan barry monod lyongu wnpx ddahlem dullhunk adepace javierFellow OriginalLurch anatiferous timflutre dbilar jrbanga edvin bayesian dbk-lab structural_bioinformatics Bioinformatics EisenLab livingthing clab
  • Reasoning the fast and frugal way: models of bounded rationality.
    Psychol Rev, Vol. 103, No. 4. (October 1996), pp. 650-669.
    by Gerd Gigerenzer, DG Goldstein
    posted to evolution learning modelling parsimony rationality by livingthingdan on 2007-05-03 11:46:52 as ***** along with 2 people and 2 groups davclark mpromber Motor, Learning, Models and Methods livingthing
  • Information compression by multiple alignment
    (1996)
    by J Wolff
    posted to parsimony mind compsci by livingthingdan on 2007-01-11 05:26:37 as **** along with 1 group livingthing
  • A comparison of catchment water quality models and direct estimation techniques
    (2002), pp. 77-85.
    by RA Letcher
    posted to catchment parsimony policy sensitivity simulation by livingthingdan on 2006-09-20 07:07:20 as ** along with 1 group livingthing
  • Simplicity: a unifying principle in cognitive science
    (2003)
    by N Chater, P Vitanyi
    posted to parsimony modelling mind informationtheory by livingthingdan on 2007-01-11 02:08:25 as **** along with 1 group livingthing
  • notes Essays in Positive Economics (Phoenix Books)
    (15 August 1966)
    by Milton Friedman
    posted to agents economics parsimony rationality by livingthingdan on 2007-06-01 03:03:38 as * along with 1 group livingthing
  • notes The Use of Knowledge in Society
    The American Economic Review, Vol. 35, No. 4. (1945), pp. 519-530.
    by FA Hayek
    posted to 5 economics informationtheory knowledge parsimony by livingthingdan on 2007-05-22 15:40:48 as read along with 5 people and 2 groups mbliemel bigbossman ddries rlai franzkurfess livingthing MITCCI
  • Imitation as behaviour parsing.
    Philos Trans R Soc Lond B Biol Sci, Vol. 358, No. 1431. (29 March 2003), pp. 529-536.
    by RW Byrne
    posted to distributed grammar inferring learning mind modelling parsimony by livingthingdan on 2006-12-18 00:10:51 as read along with 1 group livingthing
  • notes Computational Mechanics: Pattern and Prediction, Structure and Simplicity
    (19 June 2000)
    by Cosma R Shalizi, James P Crutchfield
    posted to complexity epsilonmachine inferring parsimony statistics by livingthingdan on 2007-01-30 04:51:51 as *** along with 7 people and 2 groups ansobol jrw jack BarrosH scis0000001 qwermish abominable Vision livingthing
  • Theories of Diagrammatic Reasoning: Distinguishing Component Problems
    Minds Mach., Vol. 8, No. 4. (December 1998), pp. 533-557.
    by Corin Gurr, John Lee, Keith Stenning
    posted to diagram logic mind modelling parsimony by livingthingdan on 2006-09-27 03:30:11 as read along with 1 group livingthing
  • notes Effective Diagrammatic Communication: Syntactic, Semantic and Pragmatic Issues
    Journal of Visual Languages and Computing, Vol. 10, No. 4. (1999), pp. 317-342.
    by Corin A Gurr
    posted to diagram mind parsimony transdisciplinary by livingthingdan on 2006-09-27 02:37:52 as *** along with 1 group livingthing
  • Evolution in the Social Brain
    Science, Vol. 317, No. 5843. (7 September 2007), pp. 1344-1347.
    by RIM Dunbar, Susanne Shultz
    posted to evolution mind modelling parsimony primate by livingthingdan on 2007-09-07 16:44:27 as **** along with 4 people and 2 groups shivakmr lackaff cannon heliopais VisionLab livingthing
  • Detecting deception by manipulating cognitive load
    Trends in Cognitive Sciences, Vol. 10, No. 4. (April 2006), pp. 141-142.
    by Aldert Vrij, Ronald Fisher, Samantha Mann, Sharon Leal
    posted to communication compsci embodied epistemology mind parsimony by livingthingdan on 2007-03-29 12:13:59 as *** along with 8 people and 5 groups voiklis stefanherzog garyfeng koba224 heintz craigtalbert leo_20 suizan Intention_Reading ReadingLab ACS-Basel folk_epistemology livingthing
  • Relevance: Communication and Cognition
    (02 December 1995)
    by Dan Sperber, Deirdre Wilson
    posted to communication distributed dynamicalsystems metaphor norms parsimony systems by livingthingdan on 2007-03-03 10:27:06 as **** along with 3 people and 2 groups ruzel facopad heintz folk_epistemology livingthing
  • notes Golden Eggs and Hyperbolic Discounting
    The Quarterly Journal of Economics, Vol. 112, No. 2. (1997), pp. 443-477.
    by David Laibson
    posted to ethics parsimony rationality uncertainty by livingthingdan on 2007-06-01 04:11:13 as **** along with 2 people and 1 group kenjimyzk kericson livingthing
  • Cognitive Emergence
    Philosophy of Science, Vol. 64, No. Supplement. (1997), pp. S346-S358.
    by Fritz Rohrlich
    posted to emergence hierarchy hps mind modelling parsimony by livingthingdan on 2007-05-18 14:22:32 as **** along with 1 person and 1 group jgoodwin livingthing
  • A modular minimal cell model: Purine and pyrimidine transport and metabolism
    PNAS, Vol. 101, No. 17. (27 April 2004), pp. 6681-6686.
    by M Castellanos, DB Wilson, ML Shuler
    posted to cell parsimony simulation by livingthingdan on 2006-09-21 02:08:42 as ** along with 1 group livingthing
  • The intelligibility of the universe and the notions of simplicity, complexity and irreducibility
    (2002)
    by G Chaitin
    posted to compsci hps informationtheory modelling parsimony teachmyself by livingthingdan on 2007-05-17 14:05:46 as **** along with 1 person and 1 group sdvillal livingthing
  • notes Reasoning with Multiple Diagrams: Focusing on the Cognitive Integration Process
    by Jinwoo Kim, Jungpil Hahn
    posted to cld diagram embodied inferring mind parsimony by livingthingdan on 2006-10-09 03:10:32 as **** along with 1 group livingthing
  • The Predictive Paradigm - Compression and Model Bias in Human Cognition
    by Mark Davis
    posted to prediction parsimony modelling mind compsci by livingthingdan on 2007-01-11 05:26:11 as read along with 1 group livingthing
  • notes Future Directions of Conceptual Modeling
    Lecture Notes in Computer Science : Conceptual Modeling: Current Issues and Future Directions (1999), 287.
    by Peter P Chen, Bernhard Thalheim, Leah Y Wong
    posted to compsci modelling parsimony by livingthingdan on 2006-12-18 03:58:45 as **** along with 1 group livingthing
  • An agent-based perspective on imitation
    (2002)
    by K Dautenhahn, C Nehaniv
    posted to rationality parsimony learning distributed agents by livingthingdan on 2006-12-18 00:24:14 as *** along with 1 group livingthing
  • A Note on the Pure Theory of Consumer's Behaviour
    Economica, Vol. 51, No. 17. (1938)
    by PA Samuelson
    posted to agents economics methodology modelling parsimony rationality simulation by livingthingdan on 2007-06-01 02:36:19 as ***** along with 1 person and 1 group toomash livingthing
  • notes Policy sensitivity analysis: simple versus complex fishery models
    System Dynamics Review, Vol. 21, No. 2. (2005), pp. 123-145.
    by Erling Moxnes
    posted to economics modelling parsimony policy simulation uncertainty by livingthingdan on 2006-10-09 06:15:03 as *** along with 1 group livingthing
  • The Implications of a Cosmological Information Bound for Complexity, Quantum Information and the Nature of Physical Law
    (6 Mar 2007)
    by PCW Davies
    posted to complexity informationtheory intro parsimony physics thermodynamics by livingthingdan on 2008-01-02 04:32:53 as **
  • Parsing as information compression by multiple alignment
    (1998)
    by J Wolff
    posted to parsing parsimony language grammar compsci by livingthingdan on 2007-01-11 05:27:11 as **** along with 1 group livingthing
  • notes Imitation in Animals and Artifacts (Complex Adaptive Systems)
    (21 May 2002)
    by Kerstin Dautenhahn, Chrystopher L Nehaniv
    posted to distributed grammar learning modelling neuron parsimony by livingthingdan on 2006-12-18 00:15:50 as *** along with 1 group livingthing
  • notes The complexity of simplicity.
    Genome Biol, Vol. 2, No. 2. (2001)
    by SN Peterson, CM Fraser
    posted to complexity genetic intro parsimony by livingthingdan on 2006-09-21 05:14:45 as ** along with 3 people and 1 group operon madhadron nicg livingthing
  • notes Complexity Compression and Evolution
    (JanuaryMay-JanuarySeptember 1995), pp. 310-317.
    by Peter Nordin, Wolfgang Banzhaf
    edited by L Eshelman
    posted to parsimony evolution compsci by livingthingdan on 2007-01-11 02:11:50 as ***** along with 1 group livingthing
  • Algorithmic information theory
    (1987)
    by Gregory J Chaitin
    posted to complexity compsci evolution genetic parsimony teachmyself by livingthingdan on 2007-05-17 12:23:44 as ***** along with 1 group livingthing
  • Simplicity out of complexity in environmental modelling: Occam's razor revisited
    Vol. 23, No. 2. (1996), pp. 165-210.
    by Peter Young, Stuart Parkinson, Matthew Lees
    posted to catchment complexity parsimony simulation statistics by livingthingdan on 2006-09-20 07:58:55 as *** along with 1 group livingthing
  • Computing, Cognition and Information Compression
    AI Communications, Vol. 6, No. 2. (1993), pp. 107-127.
    by Gerard J Wolff
    posted to parsimony mind informationtheory compsci by livingthingdan on 2007-01-11 02:09:09 as ***** along with 1 person and 1 group josepe livingthing
  • Extreme genome reduction in Buchnera spp.: Toward the minimal genome needed for symbiotic life
    PNAS, Vol. 99, No. 7. (2 April 2002), pp. 4454-4458.
    by Rosario Gil, Beatriz Sabater-Munoz, Amparo Latorre, Francisco J Silva, Andres Moya
    posted to evolution genetic parsimony by livingthingdan on 2006-09-21 02:15:17 as ** along with 1 person and 1 group operon livingthing
  • When a good fit can be bad
    Trends in Cognitive Sciences, Vol. 6, No. 10. (1 October 2002), pp. 421-425.
    by Mark A Pitt, In J Myung
    posted to explanation fit parsimony modelling equation structural by gareth on 2007-11-15 14:53:20 as read along with 1 person usr
  • Models in Ecosystem Science
    (10 November 2003)
    by CD Canham
    posted to fit history modelling parsimony philosophy science by gareth on 2007-11-19 14:24:37 as read
  • Gene family evolution and homology: genomics meets phylogenetics.
    Annu Rev Genomics Hum Genet, Vol. 1 (2000), pp. 41-73.
    by JW Thornton, R DeSalle
    posted to transfer parsimony orthology lateral homology hgt gene evolution duplication by fhsantanna on 2008-05-26 00:47:45 as ** along with 1 person Schmidtc
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