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Tag paramestim [24 articles]

Recent papers classified by the tag paramestim.
  • Bridging from molecular simulation to biochemical networks.
    Curr Opin Struct Biol, Vol. 17, No. 2. (April 2007), pp. 166-172.
    by M Stein, RR Gabdoulline, RC Wade
    posted to bioinformatics paramestim by julius on 2007-09-28 15:58:41 as ** along with 6 people ocs aqeel Borelli cmmorel ras higueruelo
  • Numerical Matrices Method for Nonlinear System Identification and Description of Dynamics of Biochemical Reaction Networks
    Biophys. J., Vol. 92, No. 10. (15 May 2007), pp. 3459-3473.
    by Alexey V Karnaukhov, Elena V Karnaukhova, James R Williamson
    posted to discrimination paramestim sysbio by julius on 2007-06-01 16:46:14 as *** along with 2 people and 1 group Borelli dylan77 SysbioMPI-TCells
  • A hybrid approach for efficient and robust parameter estimation in biochemical pathways.
    Biosystems, Vol. 83, No. 2-3. (r 2006), pp. 248-265.
    by M Rodriguez-Fernandez, P Mendes, JR Banga
    posted to paramestim by julius on 2006-06-28 13:24:34 as read along with 2 people and 1 group jrbanga pmendes SysbioMPI-TCells
  • Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2396-2405.
    by DE Zak, GE Gonye, JS Schwaber, FJ Doyle
    posted to identification oed paramestim sysbio by jrbanga on 2007-03-05 16:04:31 as read along with 5 people ryang wnpx bertelsen lukaswindhager aheilbut
  • Optimization in computational systems biology
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Julio Banga
    posted to dynamic_optimization global_optimization identification oed optimization paramestim review sysbio by jrbanga on 2008-05-30 12:41:03 as read along with 7 people mazloom guhjy tmmurali reyez biehl balicea phoenixzxl
  • A benchmark for methods in reverse engineering and model discrimination: problem formulation and solutions.
    Genome Res, Vol. 14, No. 9. (September 2004), pp. 1773-1785.
    by A Kremling, S Fischer, K Gadkar, FJ Doyle, T Sauter, E Bullinger, F Allgöwer, ED Gilles
    posted to discrimination identification oed paramestim sysbio by jrbanga on 2007-02-21 18:06:01 as read along with 2 people and 2 groups rhem1224 wnpx TCR_Signaling SysbioMPI-TCells
  • Global optimization of dynamic systems
    Computers and Chemical Engineering, Vol. 28, No. 3. (15 March 2004), pp. 403-415.
    by I Papamichail, CS Adjiman
    posted to dynamic_optimization global_optimization optimization paramestim by jrbanga on 2007-07-26 12:18:25 as read
  • Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems
    BMC Bioinformatics, Vol. 7 (02 November 2006), 483.
    by Maria Rodriguez-Fernandez, Jose A Egea, Julio R Banga
    posted to identification paramestim sysbio by jrbanga on 2007-02-15 15:55:44 as read
  • Parameter Estimation in Biochemical Pathways: A Comparison of Global Optimization Methods
    Genome Res., Vol. 13, No. 11. (1 November 2003), pp. 2467-2474.
    by Carmen G Moles, Pedro Mendes, Julio R Banga
    posted to identification paramestim pathways sysbio by jrbanga on 2007-02-16 12:25:34 as read along with 6 people and 3 groups Borelli os252 nojhan petrposik lord_weldaan pmendes EvolutionaryComputation Metaheuristics Optimization
  • notes Computation of optimal identification experiments for nonlinear dynamic process models: A stochastic global optimization approach
    Ind. Eng. Chem. Res., Vol. 41, No. 10. (2002), pp. 2425-2430.
    by JR Banga, KJ Versyck, JF Van Impe
    posted to identification oed paramestim sysbio by jrbanga on 2007-02-16 15:48:01 as read
  • Numerical parameter identifiability and estimability: Integrating identifiability, estimability, and optimal sampling design
    MATH. BIOSCI., Vol. 77, No. 1-2. (1985), pp. 201-227.
    by JA Jacquez, P Greif
    posted to general identification paramestim sysbio by jrbanga on 2007-02-21 18:13:52 as **
  • SBML-PET: a Systems Biology Markup Language-based parameter estimation tool
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2704-2705.
    by Zi, Zhike, Klipp, Edda
    posted to paramestim pathways sysbio by jrbanga on 2007-02-16 15:21:36 as read along with 3 people dullhunk csgillespie Ronalddonald
  • Optimal Identification of Biochemical Reaction Networks
    Biophys. J., Vol. 86, No. 3. (2004), pp. 1270-1281.
    by XJ Feng, H Rabitz
    posted to identification paramestim sysbio by jrbanga on 2007-02-21 18:04:08 as **
  • Extraction of elementary rate constants from global network analysis of E. coli central metabolism
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Jiao Zhao, Douglas Ridgway, Gordon Broderick, Andriy Kovalenko, Michael Ellison
    posted to optimization paramestim sysbio by jrbanga on 2008-05-13 08:51:17 as *** along with 1 person pmendes
  • Parameter estimation in models combining signal transduction and metabolic pathways: The dependent input approach
    IEE Proc. Syst. Biol., Vol. 153, No. 4. (2006), pp. 263-274.
    by NAW van Riel, ED Sontag
    posted to metabolic paramestim pathways sysbio by jrbanga on 2007-02-15 15:58:56 as read
  • Designing experiments that aid in the identification of regulatory networks
    Brief Funct Genomic Proteomic, Vol. 4, No. 4. (1 February 2006), pp. 331-342.
    by Kenneth J Kauffman, Babatunde A Ogunnaike, Jeremy S Edwards
    posted to identification oed paramestim pathways sysbio by jrbanga on 2007-02-16 11:51:29 as ***
  • Efficient classification of complete parameter regions based on semidefinite programming
    BMC Bioinformatics, Vol. 8 (15 January 2007), 12.
    by Lars Kuepfer, Uwe Sauer, Pablo A Parrilo
    posted to paramestim sysbio by jrbanga on 2007-07-26 10:52:13 as *** along with 1 person and 1 group julius SysbioMPI-TCells
  • Global identifiability of nonlinear models of biological systems
    IEEE Trans. Biomed. Eng., Vol. 48, No. 1. (2001), pp. 55-65.
    by S Audoly, G Bellu, L D'Angio?, MP Saccomani, C Cobelli
    posted to identification paramestim sysbio by jrbanga on 2007-02-21 18:12:16 as **
  • Computation of Optimal Identification Experiments for Nonlinear Dynamic Process Models: a Stochastic Global Optimization Approach
    Ind. Eng. Chem. Res., Vol. 41, No. 10. (15 May 2002), pp. 2425-2430.
    by JR Banga, KJ Versyck, JF Van Impe
    posted to oed optimization paramestim by jrbanga on 2007-06-25 12:53:39 as read along with 1 person and 1 group arne dIEMoSIRIS
  • Optimal sampling time selection for parameter estimation in dynamic pathway modeling
    BioSystems, Vol. 75, No. 1-3. (2004), pp. 43-55.
    by Z Kutalik, KH Cho, O Wolkenhauer
    posted to identification paramestim sysbio by jrbanga on 2007-02-21 18:02:25 as read along with 1 person wnpx
  • Parameter estimation: Local identifiability of parameters
    AM. J. PHYSIOL. ENDOCRINOL. METAB., Vol. 258, No. 4 21-4. (1990)
    by JA Jacquez, T Perry
    posted to identification paramestim sysbio by jrbanga on 2007-02-21 18:14:45 as **
  • Exploiting the bootstrap method for quantifying parameter confidence intervals in dynamical systems
    Metab. Eng., Vol. 8, No. 5. (2006), pp. 447-455.
    by M Joshi, A Seidel-Morgenstern, A Kremling
    posted to identification paramestim sysbio by jrbanga on 2007-02-21 18:07:31 as read
  • Iterative approach to model identification of biological networks.
    BMC Bioinformatics, Vol. 6 (2005), 155.
    by KG Gadkar, R Gunawan, Doyle
    posted to identification paramestim pathways sysbio by jrbanga on 2007-02-16 15:22:30 as read along with 1 person wnpx
  • Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data
    Theoretical Biology and Medical Modelling, Vol. 3 (15 December 2006), 42.
    by Wolfram Liebermeister, Edda Klipp
    posted to identification paramestim pathways sysbio by jrbanga on 2007-03-06 08:39:59 as ** along with 5 people and 1 group lflorez guhjy wnpx raiyar fishtank steinmetzlab
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