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Tag packing [185 articles]

Recent papers classified by the tag packing.
  • Performance Bounds for Level-Oriented Two-Dimensional Packing Algorithms
    SIAM Journal on Computing, Vol. 9, No. 4. (1980), pp. 808-826.
    by Jr, MR Garey, DS Johnson, RE Tarjan
    posted to packing by zubow on 2007-08-27 15:34:44 as **
  • Comparison of helix interactions in membrane and soluble alpha-bundle proteins.
    Biophys J, Vol. 82, No. 5. (May 2002), pp. 2720-2736.
    by M Eilers, AB Patel, W Liu, SO Smith
    posted to mp_properties packing by thaliana on 2005-12-19 12:05:26 as **
  • The Calpha ---H...O hydrogen bond: a determinant of stability and specificity in transmembrane helix interactions.
    Proc Natl Acad Sci U S A, Vol. 98, No. 16. (31 July 2001), pp. 9056-9061.
    by A Senes, I Ubarretxena-Belandia, DM Engelman
    posted to mp_properties packing by thaliana on 2005-12-19 12:00:11 as ** along with 1 person and 1 group xdeupi LabCompMed
  • Sequence motifs, polar interactions and conformational changes in helical membrane proteins.
    Curr Opin Struct Biol, Vol. 13, No. 4. (August 2003), pp. 412-417.
    by AR Curran, DM Engelman
    posted to mp_properties packing by thaliana on 2005-12-19 12:07:45 as **
  • The role of extra-membranous inter-helical loops in helix-helix interactions.
    Protein Eng Des Sel, Vol. 18, No. 12. (December 2005), pp. 563-570.
    by MB Ulmschneider, DP Tieleman, MS Sansom
    posted to loops mp_properties packing by thaliana on 2005-12-19 12:04:53 as ** along with 2 people and 1 group xdeupi allanlo LabCompMed
  • Rendezvous in a membrane: close packing, hydrogen bonding, and the formation of transmembrane helix oligomers.
    FEBS Lett, Vol. 577, No. 1-2. (5 November 2004), pp. 5-8.
    by D Schneider
    posted to mp_properties packing by thaliana on 2005-12-19 11:59:19 as **
  • Folding of helical membrane proteins: the role of polar, GxxxG-like and proline motifs.
    Curr Opin Struct Biol, Vol. 14, No. 4. (August 2004), pp. 465-479.
    by A Senes, DE Engel, WF DeGrado
    posted to mp_properties packing by thaliana on 2005-12-19 12:02:13 as ** along with 1 person and 1 group xdeupi LabCompMed
  • Interaction of transmembrane helices by a knobs-into-holes packing characteristic of soluble coiled coils.
    Proteins, Vol. 31, No. 2. (1 May 1998), pp. 150-159.
    by D Langosch, J Heringa
    posted to mp_properties packing by thaliana on 2005-12-19 12:11:47 as **
  • Helix-packing motifs in membrane proteins.
    Proc Natl Acad Sci U S A (5 September 2006)
    by R F S F Walters, W F F Degrado
    posted to packing tm_helices by thaliana on 2007-03-21 10:35:32 as ** along with 5 people and 1 group hc5428 xdeupi dgront sebk chgjb LabCompMed
  • Helical packing patterns in membrane and soluble proteins.
    Biophys J, Vol. 87, No. 6. (December 2004), pp. 4075-4086.
    by M Gimpelev, LR Forrest, D Murray, B Honig
    posted to mp_properties packing by thaliana on 2005-12-19 11:57:50 as **
  • Peptides as transmembrane segments: Decrypting the determinants for helix-helix interactions in membrane proteins
    Peptide Science, Vol. 88, No. 2. (2007), pp. 217-232.
    by Arianna Rath, Rachel M Johnson, Charles M Deber
    posted to mp_properties packing by thaliana on 2007-05-04 14:33:12 as ** along with 1 person viktor21614
  • The GxxxG motif: a framework for transmembrane helix-helix association.
    J Mol Biol, Vol. 296, No. 3. (25 February 2000), pp. 911-919.
    by WP Russ, DM Engelman
    posted to mp_properties packing by thaliana on 2005-12-19 12:13:48 as **
  • Interhelical hydrogen bonds and spatial motifs in membrane proteins: polar clamps and serine zippers.
    Proteins, Vol. 47, No. 2. (1 May 2002), pp. 209-218.
    by L Adamian, J Liang
    posted to mp_properties packing by thaliana on 2005-12-19 12:09:25 as ** along with 1 person and 1 group xdeupi LabCompMed
  • How do helix-helix interactions help determine the folds of membrane proteins? Perspectives from the study of homo-oligomeric helical bundles.
    Protein Sci, Vol. 12, No. 4. (April 2003), pp. 647-665.
    by WF DeGrado, H Gratkowski, JD Lear
    posted to mp_properties packing by thaliana on 2005-12-19 12:00:55 as ** along with 1 person sebk
  • Internal packing of helical membrane proteins.
    Proc Natl Acad Sci U S A, Vol. 97, No. 11. (23 May 2000), pp. 5796-5801.
    by M Eilers, SC Shekar, T Shieh, SO Smith, PJ Fleming
    posted to mp_properties packing by thaliana on 2005-12-19 12:03:54 as ** along with 1 person hc5428
  • Motifs of two small residues can assist but are not sufficient to mediate transmembrane helix interactions.
    J Mol Biol, Vol. 343, No. 4. (29 October 2004), pp. 799-804.
    by D Schneider, DM Engelman
    posted to mp_properties packing by thaliana on 2005-12-19 12:03:07 as **
  • notes A genetic algorithm for solving the two-dimensional assortment problem
    Comput. Ind. Eng., Vol. 50, No. 1. (May 2006), pp. 175-184.
    by Chang-Chun Lin
    posted to dimensional genetic packing reduction by tangbeili on 2006-12-25 20:45:01 as read
  • On Chain Statistics and Entanglement of Flexible Linear Polymer Melts
    Macromolecules, Vol. 40, No. 24. (27 November 2007), pp. 8684-8694.
    by SQ Wang
    posted to entanglement packing review by sas on 2007-11-21 18:54:32 as ** along with 2 people kaz229 gsub
  • A Strong Cutting Plane/Branch-and-Bound Algorithm for Node Packing
    The Journal of the Operational Research Society, Vol. 43, No. 5. (1992), pp. 443-457.
    by GL Nemhauser, G Sigismondi
    posted to algorithms branch-and-bound cutting-plane forestry graph harvest node packing by rocarvaj on 2008-01-09 18:57:09 as ***** along with 1 group Management Science - UAI
  • Search Strategies for Rectangle Packing
    Principles and Practice of Constraint Programming (2008), pp. 52-66.
    by Helmut Simonis, Barry O’sullivan
    posted to search rectangle packing by pwais on 2008-10-04 21:18:15 as **
  • Cholesterol Packing around Lipids with Saturated and Unsaturated Chains: A Simulation Study
    Langmuir (3 June 2008)
    by Sagar A Pandit, See-Wing Chiu, Eric Jakobsson, Ananth Grama, HL Scott
    posted to cholesterol lipid packing pandit08pdf simulation by paulschlesinger on 2008-06-04 01:50:47 as ** along with 2 people and 1 group sobolevnrm dimka baker-group
  • Interaction of LL-37 with model membrane systems of different complexity - Influence of the lipid matrix
    Biophys. J. (7 March 2008), biophysj.107.123620.
    by Eva Sevcsik, Georg Pabst, Walter Richter, Sabine Danner, Heinz Amenitsch, Karl Lohner
    posted to binding composition membrane packing peptide by paulschlesinger on 2008-03-10 17:58:31 as **
  • High-Vapor Pressure Perfluorocarbons Cause Vesicle Fusion and Changes in Membrane Packing
    Biophys. J. (8 August 2008), biophysj.108.133496.
    by Berenice Venegas, Marla Wolfson, Peter Cooke, Parkson L Chong
    posted to fusion membrane packing perfluorcarbons veneg08pdf by paulschlesinger on 2008-08-12 22:23:10 as **
  • Impact of cholesterol on voids in phospholipid membranes.
    The Journal of chemical physics, Vol. 121, No. 24. (22 December 2004), pp. 12676-12689.
    by E Falck, M Patra, M Karttunen, MT Hyvönen, I Vattulainen
    posted to falck04apdf cholesterol area packing membranes free by paulschlesinger on 2008-09-01 18:41:50 as **
  • Cardiolipin packing ability studied by grazing incidence X-ray diffraction
    Chemistry and Physics of Lipids, Vol. In Press, Corrected Proof
    by F Etienne, Y Roche, P Peretti, S Bernard
    posted to cardiolipin membrane packing structure by paulschlesinger on 2008-02-27 19:05:26 as **
  • Symmetry, shape, and order
    (17 Dec 2007)
    by Antonio Trovato, Trinh X Hoang, Jayanth R Banavar, Amos Maritan
    posted to physics packing by pak on 2008-09-15 16:51:06 as **
  • Pentagon deposits unpack under gentle tapping
    (8 Oct 2007)
    by Ana M Vidales, Luis A Pugnaloni, Irene Ippolito
    posted to packing physics simulation by pak on 2008-07-28 12:02:34 as *
  • Probabilistic analysis of shelf algorithms for strip packing
    Discrete Mathematics and Applications, Vol. 16, No. 1. (2006), pp. 61-72.
    by NN Kuzyurin, AI Pospelov
    posted to optimization packing performance-assessment shelf by nojhan on 2006-08-31 18:47:09 as *** along with 1 person and 3 groups ima EvolutionaryComputation Metaheuristics Optimization
  • Architecture of cluster-based FPGAs with memory
    Custom Integrated Circuits Conference, 2000. CICC. Proceedings of the IEEE 2000 (2000), pp. 131-134.
    by J Clifford, S Wilton
    posted to clustering cpsc521 fpga packing by nathalie on 2005-04-26 19:03:22 as **
  • RPack: routability-driven packing for cluster-based FPGAs
    (2001), pp. 629-634.
    by Elaheh Bozorgzadeh, Seda Ogrenci-Memik, Majid Sarrafzadeh
    posted to clustering cpsc521 fpga packing by nathalie on 2005-04-20 08:20:16 as ***
  • Using cluster-based logic blocks and timing-driven packing to improve FPGA speed and density
    (1999), pp. 37-46.
    by Alexander ( Marquardt, Vaughn Betz, Jonathan Rose
    posted to clustering cpsc521 fpga packing by nathalie on 2005-04-20 08:22:05 as ***
  • VPR: A new packing, placement and routing tool for FPGA research
    (1997), pp. 213-222.
    by Vaughn Betz, Jonathan Rose
    posted to clustering fpga packing placement routing by nathalie on 2005-04-26 19:23:17 as **
  • Langevin Dynamics Simulations of Genome Packing in Bacteriophage
    Biophys. J., Vol. 91, No. 1. (1 July 2006), pp. 25-41.
    by Christopher Forrey, M Muthukumar
    posted to biophysics langevin packing phage simulation virus by kupopo on 2006-07-03 20:09:10 as **
  • Dynamics of DNA Ejection from Bacteriophage
    Biophys. J., Vol. 91, No. 2. (15 July 2006), pp. 411-420.
    by Mandar M Inamdar, William M Gelbart, Rob Phillips
    posted to biophysics dna model packing phage theory by kupopo on 2006-07-05 23:03:49 as **
  • Jamming at zero temperature and zero applied stress: The epitome of disorder
    Physical Review E, Vol. 68, No. 1. (25 July 2003), 011306.
    by Corey S O’hern, Leonardo E Silbert, Andrea J Liu, Sidney R Nagel
    posted to granular jamming packing qualifier by kdesmond on 2008-01-01 22:16:03 as ** along with 4 people cgguido weeks dchen ghunter
  • Random Packings of Frictionless Particles
    Physical Review Letters, Vol. 88, No. 7. (31 January 2002), 075507.
    by Corey S O'Hern, Stephen A Langer, Andrea J Liu, Sidney R Nagel
    posted to packing qualifier by kdesmond on 2008-01-24 05:20:03 as ** along with 2 people softsimu dchen
  • Geometry of frictionless and frictional sphere packings
    Physical Review E, Vol. 65, No. 3. (21 February 2002), 031304.
    by Leonardo E Silbert, Deniz Ertaş, Gary S Grest, Thomas C Halsey, Dov Levine
    posted to packing qualifier by kdesmond on 2008-01-24 05:19:36 as ** along with 1 person ghunter
  • Computer simulation of the packing of fine particles
    Physical Review E, Vol. 62, No. 3. (2000), 3900.
    by RY Yang, RP Zou, AB Yu
    posted to granular_cohesive packing qualifier by kdesmond on 2008-03-15 22:30:38 as **
  • On the relationship between porosity and interparticle forces
    Powder Technology, Vol. 130, No. 1-3. (19 February 2003), pp. 70-76.
    by AB Yu, CL Feng, RP Zou, RY Yang
    posted to granular_cohesive packing qualifier by kdesmond on 2008-03-15 22:36:53 as **
  • Effect of material properties on the packing of fine particles
    Journal of Applied Physics, Vol. 94, No. 5. (2003), pp. 3025-3034.
    by RY Yang, RP Zou, AB Yu
    posted to granular_cohesive packing qualifier by kdesmond on 2008-03-15 22:46:46 as **
  • Random close packing revisited: Ways to pack frictionless disks
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 71, No. 6. (2005)
    by Ning Xu, Jerzy Blawzdziewicz, Corey S O'Hern
    posted to granular jamming packing by kdesmond on 2008-01-01 22:16:45 as ** along with 2 people ghunter dchen
  • Understanding the Frequency Distribution of Mechanically Stable Disk Packings
    (8 Jun 2006)
    by Guo-Jie Gao, Jerzy Blawzdziewicz, Corey S O'hern
    posted to granular jamming packing by kdesmond on 2008-01-01 22:20:00 as **
  • Random loose packing of cohesive granular materials
    EPL (Europhysics Letters), Vol. 75, No. 6. (2006), pp. 985-991.
    by JM Valverde, A Castellanos
    posted to granular_cohesive packing qualifier by kdesmond on 2008-02-24 06:40:58 as **
  • DiMoVo: a Voronoi tessellation-based method for discriminating crystallographic and biological protein-protein interactions.
    Bioinformatics (19 January 2008)
    by Julie Bernauer, Ranjit Prasad P Bahadur, Francis Rodier, Joël Janin, Anne Poupon
    posted to packing ppi software by jteyra on 2008-08-06 10:19:40 as ** along with 3 people kintoki higueruelo bicko
  • 3D Complex: A Structural Classification of Protein Complexes
    PLoS Computational Biology, Vol. 2, No. 11. (1 November 2006), e155.
    by Emmanuel D Levy, Jose B Pereira-Leal, Cyrus Chothia, Sarah A Teichmann
    posted to oligomerization packing ppi_homology by jteyra on 2008-07-10 17:13:15 as ** along with 2 people aalibes krishnaJCSG
  • NOXclass: prediction of protein-protein interaction types.
    BMC Bioinformatics, Vol. 7 (2006)
    by H Zhu, FS Domingues, I Sommer, T Lengauer
    posted to packing ppi software by jteyra on 2008-08-04 11:04:40 as ** along with 4 people bicko chad_davis conkymacro marti
  • A unified geometric approach to graph separators
    (1991), pp. 538-547.
    by Gary L Miller, Shang-Hua Teng, Stephen A Vavasis
    posted to packing sphere by jn on 2005-08-09 13:44:09 as *** along with 1 person and 4 groups euclid Algorithms metric_embeddings TCS Polytopes
  • Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins.
    J Comput Chem, Vol. 25, No. 5. (15 April 2004), pp. 712-724.
    by E Eyal, R Najmanovich, BJ McConkey, M Edelman, V Sobolev
    posted to packing protein side-chain by j3xucite on 2007-02-19 18:59:22 as ** along with 2 people blackbart mirzazadeh
  • Bayesian statistical analysis of protein side-chain rotamer preferences.
    Protein Sci, Vol. 6, No. 8. (August 1997), pp. 1661-1681.
    by RL Dunbrack, FE Cohen
    posted to packing protein side-chain by j3xucite on 2007-05-23 17:02:41 as ** along with 12 people and 1 group karbak nknii dgront blackbart kazemi rsantana hmk LamBras mijam jwm phoenixzxl zwang TCR_Signaling
  • An algebra of polygons through the notion of negative shapes
    CVGIP: Image Understanding, Vol. 54, No. 1. (July 1991), pp. 119-144.
    by Pijush K Ghosh
    posted to irregular nesting packing by ima on 2005-12-19 06:52:35 as **
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