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Tag overrepresentation [18 articles]

Recent papers classified by the tag overrepresentation.
  • Discovery of novel transcription factor binding sites by statistical overrepresentation.
    Nucleic Acids Res, Vol. 30, No. 24. (15 December 2002), pp. 5549-5560.
    by S Sinha, M Tompa
    posted to motif overrepresentation regulation tfbs by pradiptaray on 2008-08-07 16:24:03 as ** along with 10 people GustavoLacerda kaarsinogen dquest xiaobeizhao smiddha GeeSharpMinor xi03 xili03 ep161302 wenhan
  • Global functional profiling of gene expression.
    Genomics, Vol. 81, No. 2. (February 2003), pp. 98-104.
    by S Draghici, P Khatri, RP Martins, GC Ostermeier, SA Krawetz
    posted to go ora overrepresentation by incovoma on 2007-08-30 23:57:39 as ** along with 2 people and 1 group tardigrade ealloza BioinfoCIPF
  • A new computational approach to analyze human protein complexes and predict novel protein interactions
    Genome Biology, Vol. 8, No. 12. (2007)
    by Sara Zanivan, Ilaria Cascone, Chiara Peyron, Ivan Molineris, Serena Marchio, Michele Caselle, Federico Bussolino
    posted to complex enrichment expressiondata gorelated overrepresentation proteininteraction by barriot on 2007-12-05 07:55:10 as ** along with 3 people neils grahamc zdai
  • How to decide which are the most pertinent overly-represented features during gene set enrichment analysis
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Roland Barriot, David Sherman, Isabelle Dutour
    posted to enrichment me overrepresentation sets by barriot on 2007-10-18 06:18:57 as read along with 8 people and 2 groups guhjy ealloza waghsk mcgannd jfr Eugene AlexanderPico heliopais Bioinformatics BioinfoCIPF
  • Testing gene set enrichment for subset of genes:Sub-GSE
    BMC Bioinformatics, Vol. 9 (02 September 2008), 362.
    by Xiting Yan, Fengzhu Sun
    posted to overrepresentation microarrays enrichment by barriot on 2008-09-04 08:53:20 as ** along with 7 people guhjy jfr dipenps ptrobajo trevinor ealloza paszkows
  • Gene set analyses for interpreting microarray experiments on prokaryotic organisms
    BMC Bioinformatics, Vol. 9 (05 November 2008), 469.
    by Nathan L Tintle, Aaron A Best, Matthew Dejongh, Dirk Vanbruggen, Fred Heffron, Steffen Porwollik, Ronald C Taylor
    posted to p overrepresentation enrichment by barriot on 2008-11-07 06:05:37 as ** along with 2 people pengchy dswan
  • ProbCD: enrichment analysis accounting for categorization uncertainty
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Ricardo Vencio, Ilya Shmulevich
    posted to overrepresentation sets statistics by barriot on 2007-10-17 10:01:27 as read along with 2 people and 1 group sobolevnrm heliopais baker-group
  • Microarray-based gene set analysis: a comparison of current methods
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Sarah Song, Michael Black
    posted to review overrepresentation expressiondata enrichment by barriot on 2008-11-28 07:00:22 as ** along with 6 people nuin hersh006 behindtherabbit colinDotAIBN druvus GeeSharpMinor
  • GObar: A Gene Ontology based analysis and visualization tool for gene sets
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Jason Lee, Gurpreet Katari, Ravi Sachidanandam
    posted to sets gorelated overrepresentation enrichment statistics by barriot on 2007-10-23 06:17:17 as **
  • GONOME: measuring correlations between GO terms and genomic positions
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Stefan Stanley, Timothy Bailey, John Mattick
    posted to cerevisiae enrichment gorelated neighborhood overrepresentation pge saccharomyces sets statistics by barriot on 2007-10-23 05:55:23 as **
  • Ontologizer 2.0 - A Multifunctional Tool for GO Term Enrichment Analysis and Data Exploration.
    Bioinformatics (Oxford, England) (29 May 2008)
    by Sebastian Bauer, Steffen Grossmann, Martin Vingron, Peter N N Robinson
    posted to enrichment go overrepresentation by barriot on 2008-07-07 09:56:57 as ** along with 5 people cmzmasek diamantis dullhunk guhjy kluck
  • Consistent dissection of the protein interaction network by combining global and local metrics
    Genome Biology, Vol. 8 (21 December 2007), R271.
    by Chunlin Wang, Chris Ding, Qiaofeng Yang, Stephen R Holbrook
    posted to clustering enrichment graph network overrepresentation proteininteraction by barriot on 2008-01-03 09:31:20 as ** along with 3 people grahamc cjeans carlk
  • GSEA-P: A desktop application for Gene Set Enrichment Analysis
    Bioinformatics (20 July 2007), btm369.
    by Aravind Subramanian, Heidi Kuehn, Joshua Gould, Pablo Tamayo, Jill P Mesirov
    posted to enrichment expressiondata microarray microarrays overrepresentation sets by barriot on 2007-11-28 08:08:48 as ** along with 9 people and 1 group idonaldson guhjy cassj ealloza schuylrp waszak dmontaner Eugene heliopais BioinfoCIPF
  • Assessment of protein set coherence using functional annotations
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Monica Chagoyen, Jose Carazo, Alberto P Montano
    posted to sets proteininteraction overrepresentation neighborhood modules enrichment coherence by barriot on 2008-10-21 06:58:14 as ** along with 7 people taguchi imina Keywan druvus grahamc lptolik GeeSharpMinor
  • A probabilistic generative model for GO enrichment analysis
    Nucl. Acids Res. (1 August 2008), gkn434.
    by Yong Lu, Roni Rosenfeld, Itamar Simon, Gerard J Nau, Ziv Bar-Joseph
    posted to overrepresentation gorelated expressiondata enrichment by barriot on 2008-09-29 06:14:18 as ** along with 10 people jfr guhjy inesdesantiago yaredo rdiaz paszkows waszak tmmurali raiyar jandot
  • A general strategy to determine the congruence between a hierarchical and a non-hierarchical classification
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Antonio Marco, Ignacio Marin
    posted to enrichment microarrays overrepresentation proteininteraction similarity by barriot on 2007-11-16 07:25:07 as ** along with 3 people jfr ryanraaum joshuabhk
  • Gene set enrichment analysis for non-monotone association and multiple experimental categories
    BMC Bioinformatics, Vol. 9 (14 November 2008), 481.
    by Rongheng, Leping Li
    posted to overrepresentation enrichment by barriot on 2008-11-18 10:23:55 as ** along with 2 people imina lptolik
  • SNPtoGO: characterizing SNPs by enriched GO terms
    Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 146-148.
    by Daniel F Schwarz, Oliver Hadicke, Jeanette Erdmann, Andreas Ziegler, Daniel Bayer, Steffen Moller
    posted to enrichment gorelated overrepresentation snp by barriot on 2007-12-20 05:57:57 as ** along with 1 person guhjy
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