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Tag orthologs [17 articles]

Recent papers classified by the tag orthologs.
  • Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.
    J Mol Biol, Vol. 314, No. 5. (14 December 2001), pp. 1041-1052.
    by M Remm, CE Storm, EL Sonnhammer
    posted to clustering orthologs by wiedehopf on 2008-07-24 15:20:17 as ** along with 10 people and 3 groups tharris tmmurali indigoviolet Sharpshoot jhc gurkanbebek bluto incovoma ninch cerca C. elegans / WormBase EisenLab BioinfoCIPF
  • The quest for orthologs: finding the corresponding gene across genomes
    Trends in Genetics (24 September 2008)
    by A Kuzniar, R Vanham, S Pongor, J Leunissen
    posted to orthologs genome gene by treangen on 2008-11-25 15:22:22 as ** along with 7 people guhjy natstreet druvus skembel gjuggler dchughes operon
  • OMA Browser - Exploring orthologous relations across 352 complete genomes.
    Bioinformatics (1 June 2007)
    by Adrian Schneider, Christophe Dessimoz, Gaston H H Gonnet
    posted to software orthologs genome by treangen on 2008-11-21 11:28:34 as ** along with 2 people and 1 group guhjy grahamc ParkinsonLab_at_MaRS
  • Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e175.
    by Morgan N Price, Paramvir S Dehal, Adam P Arkin
    posted to phylogeny orthologs gene bbh bacteria by treangen on 2008-11-27 19:38:15 as ** along with 10 people and 3 groups druvus carlk operon dpollard dquest djkt zwang cabbagezs heliopais blobbybirdman EisenLab cis-regulatory-evolution Myxo group
  • Assessment of phylogenomic and orthology approaches for phylogenetic inference
    Bioinformatics, Vol. 23, No. 7. (1 April 2007), pp. 815-824.
    by Dutilh, , Van Noort, , van der Heijden, , Boekhout, , Snel, , Huynen,
    posted to orthologs orthology phylogenetics by svdate on 2007-12-04 15:52:57 as *** along with 1 person maximilianh
  • Orthology prediction at Scalable Resolution by Phylogenetic Tree analysis
    BMC Bioinformatics, Vol. 8 (08 March 2007), 83.
    by Rene TJM van der Heijden, Berend Snel, Vera van Noort, Martijn A Huynen
    posted to orthologs orthology by svdate on 2007-12-04 15:51:27 as *** along with 1 person operon
  • Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by A Matsuya, R Sakate, Y Kawahara, KO Koyanagi, Y Sato, Y Fujii, C Yamasaki, T Habara, H Nakaoka, F Todokoro, K Yamaguchi, T Endo, S Oota, W Makalowski, K Ikeo, Y Suzuki, K Hanada, K Hashimoto, M Hirai, H Iwama, N Saitou, AT Hiraki, L Jin, Y Kaneko, M Kanno, K Murakami, AO Noda, N Saichi, R Sanbonmatsu, M Suzuki, J Takeda, M Tanaka, T Gojobori, T Imanishi, T Itoh
    posted to orthologs evola by shirleym on 2008-09-18 15:51:46 as ** along with 2 people cmzmasek guhjy
  • HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms.
    BMC Bioinformatics, Vol. 6 Suppl 4 (1 December 2005)
    by M Persico, A Ceol, C Gavrila, R Hoffmann, A Florio, G Cesareni
    posted to interactomes networks orthologs protein proteome wiring by mariap3636 on 2008-07-15 11:02:23 as read along with 1 person maryee
  • Assessing performance of orthology detection strategies applied to eukaryotic genomes.
    PLoS ONE, Vol. 2 (2007)
    by F Chen, AJ Mackey, JK Vermunt, DS Roos
    posted to eukatior evolution orthologs by icases on 2007-04-20 07:54:40 as ** along with 10 people and 3 groups druvus operon rvosa indigoviolet stajich cjeans winterschlaefer bpcusack cerca natstreet EisenLab FAB-lab TNT
  • eggNOG: automated construction and annotation of orthologous groups of genes
    Nucl. Acids Res. (16 October 2007), gkm796.
    by Lars J Jensen, Philippe Julien, Michael Kuhn, Christian von Mering, Jean Muller, Tobias Doerks, Peer Bork
    posted to orthologs by hplatero on 2008-02-13 18:14:08 as ** along with 5 people guhjy jmeppley maximilianh Thaverkamp larsjuhljensen
  • Orthologs, paralogs, and evolutionary genomics.
    Annu Rev Genet, Vol. 39 (2005), pp. 309-338.
    by EV Koonin
    posted to evolutionary-genomics orthologs paralogs by dchughes to the group G4ID on 2006-04-27 11:55:21 as ** along with 6 people and 2 groups aprasad penka jdiezperezj fhsantanna BioNica cerca Nie Genetics-of-Gambling
  • Conservation versus parallel gains in intron evolution.
    Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1741-1748.
    by AV Sverdlov, IB Rogozin, VN Babenko, EV Koonin
    posted to introns orthologs by penka to the group Nie on 2006-05-01 23:40:20 as ****
  • notes Inparanoid: a comprehensive database of eukaryotic orthologs.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by KP O'Brien, M Remm, EL Sonnhammer
    posted to identification inparanoid orthologs paralogs by bluto on 2006-12-25 12:00:47 as read along with 8 people and 2 groups tharris mdimmic tmmurali dragonrez indigoviolet tny incovoma jandot C. elegans / WormBase EisenLab
  • notes The COG database: a tool for genome-scale analysis of protein functions and evolution.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 33-36.
    by RL Tatusov, MY Galperin, DA Natale, EV Koonin
    posted to cog cognitor identification orthologs paralogs by bluto on 2006-12-08 09:18:37 as read along with 2 people j3xucite Ema
  • notes Benchmarking ortholog identification methods using functional genomics data.
    Genome Biol, Vol. 7, No. 4. (13 April 2006)
    by Tim Hulsen, Martijn A Huynen, Jacob de Vlieg, Peter M Groenen
    posted to bbh cog identification inparanoid kog orthologs orthomcl z100 by bluto on 2006-12-12 15:35:05 as read along with 6 people and 1 group operon indigoviolet bootsy alpae tmmurali cerca EisenLab
  • OrthoMCL: identification of ortholog groups for eukaryotic genomes.
    Genome Res, Vol. 13, No. 9. (September 2003), pp. 2178-2189.
    by L Li, CJ Stoeckert, DS Roos
    posted to identification orthologs orthomcl by bluto on 2006-12-12 16:32:59 as ** along with 10 people and 2 groups dullhunk natstreet druvus tharris mdimmic operon indigoviolet AaronDarling maximilianh ninch C. elegans / WormBase EisenLab
  • notes The COG database: an updated version includes eukaryotes.
    BMC Bioinformatics, Vol. 4 (11 September 2003)
    by RL Tatusov, ND Fedorova, JD Jackson, AR Jacobs, B Kiryutin, EV Koonin, DM Krylov, R Mazumder, SL Mekhedov, AN Nikolskaya, BS Rao, S Smirnov, AV Sverdlov, S Vasudevan, YI Wolf, JJ Yin, DA Natale
    posted to cog kog orthologs by bluto on 2006-12-06 16:55:20 as read along with 8 people and 2 groups tharris dmp arve indigoviolet j3xucite treangen westoll natstreet C. elegans / WormBase EisenLab
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