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Tag omr [45 articles]

Recent papers classified by the tag omr.
  • Integrative genomic and proteomic analysis of prostate cancer reveals signatures of metastatic progression
    Cancer Cell, Vol. 8, No. 5. (November 2005), pp. 393-406.
    by Sooryanarayana Varambally, Jianjun Yu, Bharathi Laxman, Daniel R Rhodes, Rohit Mehra, Scott A Tomlins, Rajal B Shah, Uma Chandran, Federico A Monzon, Michael J Becich
    posted to omr by waghsk on 2008-01-08 07:15:49 as ** along with 2 people abhik jfr
  • A Latent Variable Approach for Meta-Analysis of Gene Expression Data from Multiple Microarray Experiments
    BMC Bioinformatics, Vol. 8 (27 September 2007), 364.
    by Hyungwon Choi, Ronglai Shen, Arul M Chinnaiyan, Debashis Ghosh
    posted to omr by waghsk on 2007-12-06 05:20:33 as **** along with 3 people jfr akastrin julesyoo
  • From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550.
    by Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander, Jill P Mesirov
    posted to omr by waghsk on 2008-01-08 17:58:30 as ** along with 20 people and 4 groups ellakat ihpark srp33 dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin roys Bioinformatics BioinfoCIPF GeschwindLab Indigene
  • Oncogenic pathway signatures in human cancers as a guide to targeted therapies
    Nature (06 November 2005)
    by Andrea H Bild, Guang Yao, Jeffrey T Chang, Quanli Wang, Anil Potti, Dawn Chasse, Mary-Beth Joshi, David Harpole, Johnathan M Lancaster, Andrew Berchuck, John A Olson, Jeffrey R Marks, Holly K Dressman, Mike West, Joseph R Nevins
    posted to omr by waghsk on 2007-12-07 08:03:24 as ***** along with 11 people srp33 Yanno jyuh kentsis mfenner ajeffs tuck maryee eckart_bindewald frohike Ao_Li2007
  • Chromosome translocations: dangerous liaisons revisited.
    Nat Rev Cancer, Vol. 1, No. 3. (December 2001), pp. 245-250.
    by JD Rowley
    posted to omr by waghsk on 2008-02-02 17:17:26 as ** along with 1 person emb51
  • Absolute enrichment: gene set enrichment analysis for homeostatic systems.
    Nucleic Acids Res, Vol. 34, No. 22. (2006)
    by V Saxena, D Orgill, I Kohane
    posted to omr by waghsk on 2008-01-08 18:24:44 as ** along with 1 person kentsis
  • Chromosome studies on normal and leukemic human leukocytes.
    J Natl Cancer Inst, Vol. 25 (July 1960), pp. 85-109.
    by PC NOWELL, DA HUNGERFORD
    posted to omr by waghsk on 2008-02-02 17:13:45 as **
  • Gene expression profiling predicts clinical outcome of breast cancer.
    Nature, Vol. 415, No. 6871. (31 January 2002), pp. 530-536.
    by LJ van 't Veer, H Dai, MJ van de Vijver, YD He, AA Hart, M Mao, HL Peterse, K van der Kooy, MJ Marton, AT Witteveen, GJ Schreiber, RM Kerkhoven, C Roberts, PS Linsley, R Bernards, SH Friend
    posted to omr by waghsk on 2008-01-08 17:53:02 as ** along with 12 people and 1 group jo_davies nedwards jfr tuck bedo giovanni frohike Ao_Li2007 lyndon macavity1g winterschlaefer Lara GeschwindLab
  • BRCA1: cell cycle checkpoint, genetic instability, DNA damage response and cancer evolution.
    Nucleic Acids Res, Vol. 34, No. 5. (2006), pp. 1416-1426.
    by CX Deng
    posted to omr by waghsk on 2008-01-08 07:01:36 as **
  • PAGE: parametric analysis of gene set enrichment.
    BMC Bioinformatics, Vol. 6 (2005)
    by SY Kim, DJ Volsky
    posted to omr by waghsk on 2008-01-08 18:23:34 as ** along with 5 people and 1 group giovenko heliopais srp33 ealloza jdiggans BioinfoCIPF
  • Grouping Gene Ontology terms to improve the assessment of gene set enrichment in microarray data
    BMC Bioinformatics, Vol. 7 (03 October 2006), 426.
    by Alex Lewin, Ian C Grieve
    posted to omr by waghsk on 2008-01-08 18:21:22 as ** along with 5 people and 2 groups ealloza giovanni jdiggans uprock heliopais BioinfoCIPF GeschwindLab
  • Extensions to gene set enrichment
    Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 306-313.
    by Zhen Jiang, Robert Gentleman
    posted to omr by waghsk on 2008-01-08 18:19:26 as ** along with 5 people and 1 group magusina giovenko heliopais ealloza djkt BioinfoCIPF
  • The Gene Ontology (GO) database and informatics resource.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by MA Harris, J Clark, A Ireland, J Lomax, M Ashburner, R Foulger, K Eilbeck, S Lewis, B Marshall, C Mungall, J Richter, GM Rubin, JA Blake, C Bult, M Dolan, H Drabkin, JT Eppig, DP Hill, L Ni, M Ringwald, R Balakrishnan, JM Cherry, KR Christie, MC Costanzo, SS Dwight, S Engel, DG Fisk, JE Hirschman, EL Hong, RS Nash, A Sethuraman, CL Theesfeld, D Botstein, K Dolinski, B Feierbach, T Berardini, S Mundodi, SY Rhee, R Apweiler, D Barrell, E Camon, E Dimmer, V Lee, R Chisholm, P Gaudet, W Kibbe, R Kishore, EM Schwarz, P Sternberg, M Gwinn, L Hannick, J Wortman, M Berriman, V Wood, N de la Cruz, P Tonellato, P Jaiswal, T Seigfried, R White,
    posted to omr by waghsk on 2008-01-14 08:29:39 as ** along with 8 people and 1 group setar balajis nuke2005 benny dullhunk bundschu sgoetz talponer generif_paper
  • The countercurrent principle in invasion and metastasis of cancer cells. Recent insights on the roles of chemokines.
    Int J Dev Biol, Vol. 48, No. 5-6. (2004), pp. 519-527.
    by G Opdenakker, J Van Damme
    posted to omr by waghsk on 2008-01-08 06:57:02 as **
  • Enrichment analysis in high-throughput genomics--accounting for dependency in the NULL.
    Brief Bioinform (31 October 2006)
    by David L L Gold, Kevin R R Coombes, Jing Wang, Bani Mallick
    posted to omr by waghsk on 2008-01-08 18:16:33 as ** along with 1 person and 1 group jfr Bioinformatics
  • Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles.
    Neoplasia, Vol. 9, No. 2. (February 2007), pp. 166-180.
    by DR Rhodes, S Kalyana-Sundaram, V Mahavisno, R Varambally, J Yu, BB Briggs, TR Barrette, MJ Anstet, C Kincead-Beal, P Kulkarni, S Varambally, D Ghosh, AM Chinnaiyan
    posted to omr by waghsk on 2007-12-04 11:55:37 as ***** along with 2 people jfr frohike
  • Computational analysis of microarray data.
    Nat Rev Genet, Vol. 2, No. 6. (June 2001), pp. 418-427.
    by J Quackenbush
    posted to omr by waghsk on 2008-01-14 08:24:24 as ** along with 5 people and 1 group frohike shikin bryank chad_davis atombjut GeneGo
  • Improving gene set analysis of microarray data by SAM-GS
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Irina Dinu, John Potter, Thomas Mueller, Qi Liu, Adeniyi Adewale, Gian Jhangri, Gunilla Einecke, Konrad Famulski, Philip Halloran, Yutaka Yasui
    posted to omr by waghsk on 2008-01-08 18:14:33 as ** along with 7 people and 1 group heliopais jfr ealloza shigepong ghattem GeeSharpMinor LuigiAugugliaro BioinfoCIPF
  • Meta-Analysis of Microarrays: Interstudy Validation of Gene Expression Profiles Reveals Pathway Dysregulation in Prostate Cancer
    Cancer Res, Vol. 62, No. 15. (1 August 2002), pp. 4427-4433.
    by Daniel R Rhodes, Terrence R Barrette, Mark A Rubin, Debashis Ghosh, Arul M Chinnaiyan
    posted to omr by waghsk on 2007-12-04 11:52:38 as ***** along with 3 people and 1 group srp33 hawkeyehammer ugengma Indigene
  • Pathway level analysis of gene expression using singular value decomposition.
    BMC Bioinformatics, Vol. 6 (2005)
    by J Tomfohr, J Lu, TB Kepler
    posted to omr by waghsk on 2008-01-08 18:48:59 as ** along with 2 people and 1 group fisherp ealloza BioinfoCIPF
  • Cancer genes and the pathways they control.
    Nat Med, Vol. 10, No. 8. (August 2004), pp. 789-799.
    by B Vogelstein, KW Kinzler
    posted to omr by waghsk on 2008-01-08 06:54:17 as ** along with 5 people dragonrez rdiaz OscarRueda massivemayhem cpnP
  • GoMiner: a resource for biological interpretation of genomic and proteomic data.
    Genome Biol, Vol. 4, No. 4. (2003)
    by BR Zeeberg, W Feng, G Wang, MD Wang, AT Fojo, M Sunshine, S Narasimhan, DW Kane, WC Reinhold, S Lababidi, KJ Bussey, J Riss, JC Barrett, JN Weinstein
    posted to omr ora by waghsk on 2007-11-05 11:22:49 as **** along with 1 person Garamonfok
  • The hallmarks of cancer.
    Cell, Vol. 100, No. 1. (7 January 2000), pp. 57-70.
    by D Hanahan, RA Weinberg
    posted to omr by waghsk on 2008-02-02 18:03:42 as ** along with 17 people gwenknight catcremona frohike rklancer jyuh kentsis Borelli jfr laurabailey archroad iskanbasal mhucka holmesjo SeungjoonOh cerami tibbitts zebkhan
  • Interleukin-10 is an autocrine growth factor for acquired immunodeficiency syndrome-related B-cell lymphoma.
    Blood, Vol. 85, No. 12. (15 June 1995), pp. 3423-3430.
    by R Masood, Y Zhang, MW Bond, DT Scadden, T Moudgil, RE Law, MH Kaplan, B Jung, BM Espina, Y Lunardi-Iskandar
    posted to omr by waghsk on 2008-01-08 07:20:01 as **
  • A multivariate extension of the gene set enrichment analysis.
    J Bioinform Comput Biol, Vol. 5, No. 5. (October 2007), pp. 1139-1153.
    by L Klebanov, G Glazko, P Salzman, A Yakovlev, Y Xiao
    posted to omr by waghsk on 2008-01-08 18:04:47 as ** along with 2 people heliopais ealloza
  • The fundamental role of epigenetic events in cancer.
    Nat Rev Genet, Vol. 3, No. 6. (June 2002), pp. 415-428.
    by PA Jones, SB Baylin
    posted to omr by waghsk on 2008-02-02 18:00:57 as ** along with 1 person blackm0k
  • Molecular concepts analysis links tumors, pathways, mechanisms, and drugs.
    Neoplasia, Vol. 9, No. 5. (May 2007), pp. 443-454.
    by DR Rhodes, S Kalyana-Sundaram, SA Tomlins, V Mahavisno, N Kasper, R Varambally, TR Barrette, D Ghosh, S Varambally, AM Chinnaiyan
    posted to omr by waghsk on 2007-12-07 06:19:16 as ***** along with 2 people srp33 jfr
  • DACH1 is a cell fate determination factor that inhibits cyclin D1 and breast tumor growth.
    Mol Cell Biol, Vol. 26, No. 19. (October 2006), pp. 7116-7129.
    by K Wu, A Li, M Rao, M Liu, V Dailey, Y Yang, D Di Vizio, C Wang, MP Lisanti, G Sauter, RG Russell, A Cvekl, RG Pestell
    posted to omr by waghsk on 2008-01-08 07:18:15 as **
  • The epigenetic progenitor origin of human cancer
    Nature Reviews Genetics, Vol. 7, No. 1., pp. 21-33.
    by Andrew P Feinberg, Rolf Ohlsson, Steven Henikoff
    posted to omr by waghsk on 2008-02-02 17:58:31 as ** along with 6 people and 2 groups tuck sebastien_vigneau ealloza Garamonfok loopback007 tdmckee BioinfoCIPF Cancer_Stem_Cells
  • Alpha-methylacyl-CoA racemase protein expression is associated with the degree of differentiation in breast cancer using quantitative image analysis.
    Cancer Epidemiol Biomarkers Prev, Vol. 14, No. 6. (June 2005), pp. 1418-1423.
    by AK Witkiewicz, S Varambally, R Shen, R Mehra, MS Sabel, D Ghosh, AM Chinnaiyan, MA Rubin, CG Kleer
    posted to omr by waghsk on 2008-01-08 07:17:05 as **
  • Histone deacetylases and cancer: causes and therapies.
    Nat Rev Cancer, Vol. 1, No. 3. (December 2001), pp. 194-202.
    by P Marks, RA Rifkind, VM Richon, R Breslow, T Miller, WK Kelly
    posted to omr by waghsk on 2008-02-02 17:56:06 as **
  • Chromosomal aberrations and cancer risk.
    Hum Hered, Vol. 34, No. 2. (1984), pp. 76-81.
    by I Nordenson, L Beckman, S Lidén, N Stjernberg
    posted to omr by waghsk on 2008-02-02 17:54:05 as **
  • A breakpoint map of recurrent chromosomal rearrangements in human neoplasia.
    Nat Genet, Vol. 15 Spec No (April 1997), pp. 417-474.
    by F Mitelman, F Mertens, B Johansson
    posted to omr by waghsk on 2008-02-02 17:51:11 as ** along with 1 person and 1 group ealloza BioinfoCIPF
  • The impact of translocations and gene fusions on cancer causation
    Nature Reviews Cancer, Vol. 7, No. 4. (15 March 2007), pp. 233-245.
    by Felix Mitelman, Bertil Johansson, Fredrik Mertens
    posted to omr by waghsk on 2008-02-02 17:49:14 as ** along with 2 people and 1 group ealloza Garamonfok BioinfoCIPF
  • Identifying biological pathways via phase decomposition and profile extraction.
    Comput Syst Bioinformatics Conf (2006), pp. 269-280.
    by Y Zhang, Z Deng
    posted to omr by waghsk on 2008-01-08 18:34:23 as **
  • Clinical significance of cytogenetic findings in solid tumors.
    Cancer Genet Cytogenet, Vol. 95, No. 1. (May 1997), pp. 1-8.
    by F Mitelman, B Johansson, N Mandahl, F Mertens
    posted to omr by waghsk on 2008-02-02 17:47:15 as **
  • Nonparametric pathway-based regression models for analysis of genomic data.
    Biostatistics (13 June 2006)
    by Zhi Wei, Hongzhe Li
    posted to omr by waghsk on 2008-01-08 18:31:49 as ** along with 3 people jfr macavity1g ptrobajo
  • How will HPV vaccines affect cervical cancer?
    Nature Reviews Cancer, Vol. 6, No. 10., pp. 753-763.
    by Richard Roden, TC Wu
    posted to omr by waghsk on 2008-02-02 17:42:28 as **
  • The causal relation between human papillomavirus and cervical cancer.
    J Clin Pathol, Vol. 55, No. 4. (April 2002), pp. 244-265.
    by FX Bosch, A Lorincz, N Muñoz, CJ Meijer, KV Shah
    posted to omr by waghsk on 2008-02-02 17:40:14 as **
  • The LeFE algorithm: embracing the complexity of gene expression in the interpretation of microarray data
    Genome Biology, Vol. 8 (10 September 2007), R187.
    by Gabriel S Eichler, Mark Reimers, David Kane, John N Weinstein
    posted to omr by waghsk on 2008-01-08 18:28:32 as ** along with 3 people jfr rdiaz heliopais
  • Five-year follow-up of patients receiving imatinib for chronic myeloid leukemia.
    N Engl J Med, Vol. 355, No. 23. (7 December 2006), pp. 2408-2417.
    by BJ Druker, F Guilhot, SG O'Brien, I Gathmann, H Kantarjian, N Gattermann, MW Deininger, RT Silver, JM Goldman, RM Stone, F Cervantes, A Hochhaus, BL Powell, JL Gabrilove, P Rousselot, J Reiffers, JJ Cornelissen, T Hughes, H Agis, T Fischer, G Verhoef, J Shepherd, G Saglio, A Gratwohl, JL Nielsen, JP Radich, B Simonsson, K Taylor, M Baccarani, C So, L Letvak, RA Larson,
    posted to omr by waghsk on 2008-02-02 17:37:48 as ** along with 1 person Amazoness
  • The development of imatinib as a therapeutic agent for chronic myeloid leukemia.
    Blood, Vol. 105, No. 7. (1 April 2005), pp. 2640-2653.
    by M Deininger, E Buchdunger, BJ Druker
    posted to omr by waghsk on 2008-02-02 17:33:36 as **
  • How to decide which are the most pertinent overly-represented features during gene set enrichment analysis
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Roland Barriot, David Sherman, Isabelle Dutour
    posted to omr by waghsk on 2008-01-08 18:26:34 as ** along with 8 people and 2 groups AlexanderPico Eugene jfr heliopais jyuh ealloza barriot mcgannd Bioinformatics BioinfoCIPF
  • Mechanisms of BCR-ABL in the pathogenesis of chronic myelogenous leukaemia
    Nature Reviews Cancer, Vol. 5, No. 3. (01 March 2005), pp. 172-183.
    by Ruibao Ren
    posted to omr by waghsk on 2008-02-02 17:21:17 as ** along with 3 people mfenner markpoliz DevilInPgh
  • OMR: An Opportunistic Multi-Path Reliable Routing Protocol in Wireless Sensor Networks
    Parallel Processing Workshops, 2007. ICPPW 2007. International Conference on (2007), pp. 74-74.
    by Junzhao Du, Hui Liu, Ping Chen
    posted to multipath omr opportunistic routing by tianke on 2008-02-22 10:42:10 as **
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