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Tag omics [97 articles]

Recent papers classified by the tag omics.
  • Metabolomics reviewed: a new "omics" platform technology for systems biology and implications for natural products research.
    J Nat Prod, Vol. 68, No. 12. (December 2005), pp. 1813-1820.
    by S Rochfort
    posted to omics by wilbur on 2008-01-04 11:50:37 as ** along with 3 people and 1 group irenas imouthesmp daniel_schober dbk-lab
  • Establishing reporting standards for metabolomic and metabonomic studies: a call for participation.
    OMICS, Vol. 10, No. 2. (2006), pp. 158-163.
    by O Fiehn, B Kristal, B van Ommen, LW Sumner, SA Sansone, C Taylor, N Hardy, R Kaddurah-Daouk
    posted to omics by wilbur on 2008-01-04 12:33:01 as *** along with 1 person BIBLIOma
  • Inferring Transcriptional Networks by Mining 'Omics' Data
    Current Bioinformatics, Vol. 1, No. 3. (August 2006), pp. 301-313.
    by Tim Van den Bulcke, Karen Lemmens, Yves Van de Peer, Kathleen Marchal
    posted to network omics by tomhebbron on 2008-08-13 09:26:48 as ** along with 1 person kentz
  • Correlating the Transcriptome, Proteome, and Metabolome in the Environmental Adaptation of a Hyperthermophile
    J. Proteome Res. (2 February 2008)
    by Sunia A Trauger, Ewa Kalisak, Jaroslaw Kalisiak, Hirotoshi Morita, Michael V Weinberg, Angeli L Menon, Poole, Michael W Adams, Gary Siuzdak
    posted to dataset omics by thomaskelder on 2008-02-08 07:47:38 as * along with 2 people neils GeeSharpMinor
  • OmicsViz: Cytoscape plug-in for visualizing Omics data across species.
    Bioinformatics (Oxford, England) (8 September 2008)
    by Tian Xia, Julie A A Dickerson
    posted to visualisation software plugin omics cytoscape by sjcockell on 2008-09-10 13:14:46 as ** along with 5 people guhjy natstreet cjhall druvus aconesa
  • Editorial [ Omics: An Approach for Drug Targets Guest Editor: Virendra S. Gomase Co-Guest Editor: Somnath Tagore ]
    Current Drug Metabolism, Vol. 9, No. 3. (March 2008), pp. 189-189.
    by Gomase, S Virendra, Tagore, Somnath
    posted to omics by renatomilani on 2008-04-03 14:13:53 as **
  • Kinomics
    Current Drug Metabolism, Vol. 9, No. 3. (March 2008), pp. 255-258.
    by Gomase, S Virendra, Tagore, Somnath
    posted to kinome omics by renatomilani on 2008-04-03 14:13:35 as **
  • OmicBrowse: a browser of multidimensional omics annotations.
    Bioinformatics (31 October 2006)
    by Tetsuro Toyoda, Yoshiki Mochizuki, Keith Player, Naohiko Heida, Yoshiyuki Sakaki
    posted to omics visualization by plofje on 2006-11-04 05:24:26 as ** along with 1 person guhjy
  • No place like Ome
    Genome Biology, Vol. 3, No. 7. (2002), pp. comment1010.1-comment1010.2.
    by Gregory Petsko
    posted to bioinformatic diplomarbeit omics by moborg on 2007-11-06 17:40:30 as **
  • Cancer genetics: Looking at the big picture
    Nature Reviews Genetics, Vol. 9, No. 7. (10 June 2008), pp. 498-499.
    by Patrick Goymer
    posted to __cancer omics by marck on 2008-06-28 08:25:39 as ** along with 1 person reyez
  • notes Novel integrative genomics strategies to identify genes for complex traits.
    Anim Genet, Vol. 37 Suppl 1 (August 2006), pp. 18-23.
    by EE Schadt
    posted to f1000 omics by manduca on 2006-10-31 22:06:01 as ** along with 1 person fisherp
  • The model organism as a system: integrating 'omics' data sets
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 3., pp. 198-210.
    by Andrew R Joyce, Bernhard
    posted to integrating omics review by lylu on 2008-01-08 08:12:20 as read along with 10 people guhjy yaredo balajis wnpx dgront mmt lh1 vietanh0 maburkitt csanford
  • Metabolome Analysis of Biosynthetic Mutants Reveals a Diversity of Metabolic Changes and Allows Identification of a Large Number of New Compounds in Arabidopsis
    Plant Physiol., Vol. 147, No. 4. (1 August 2008), pp. 2107-2120.
    by Christoph Bottcher, Edda von Roepenack-Lahaye, Jurgen Schmidt, Constanze Schmotz, Steffen Neumann, Dierk Scheel, Stephan Clemens
    posted to flavonoid metabolite omics by kengg on 2008-08-13 02:39:24 as **
  • Metabolic Engineering in the -omics Era: Elucidating and Modulating Regulatory Networks.
    Microbiol Mol Biol Rev, Vol. 69, No. 2. (June 2005), pp. 197-216.
    by GN Vemuri, AA Aristidou
    posted to fba metabolic-engineering omics regulatory-networks by JeremyZucker on 2007-10-17 19:43:40 as ** along with 3 people and 1 group operon kuhn athleem MetabolicModeling
  • Impact of `ome' analyses on inverse metabolic engineering
    Metabolic Engineering, Vol. 6, No. 3. (July 2004), pp. 204-211.
    by Christoffer Bro, Jens Nielsen
    posted to metabolic-engineering omics by JeremyZucker on 2007-10-17 20:57:32 as **
  • Fusion of mass spectrometry-based metabolomics data.
    Anal Chem, Vol. 77, No. 20. (15 October 2005), pp. 6729-6736.
    by AK Smilde, MJ van der Werf, S Bijlsma, BJ van der Werff-van der Vat, RH Jellema
    posted to metab new omics by irenas on 2006-01-19 14:16:55 as ***** along with 2 people and 1 group andytseng rvosa dbk-lab
  • Metabolomics breaks the silence.
    Trends Microbiol, Vol. 9, No. 4. (April 2001)
    by GH Thomas
    posted to memo metab omics by irenas on 2005-03-23 12:51:52 as ** along with 1 person and 1 group andytseng dbk-lab
  • Common interchange standards for proteomics data: Public availability of tools and schema.
    Proteomics, Vol. 4, No. 2. (February 2004), pp. 490-491.
    by S Orchard, H Hermjakob, RK Julian, K Runte, D Sherman, J Wojcik, W Zhu, R Apweiler
    posted to memo omics prote standard by irenas on 2005-04-07 12:06:40 as ** along with 2 people and 1 group andytseng katerinakal dbk-lab
  • Metabolomics shows the way to new discoveries.
    Genome Biol, Vol. 6, No. 11. (2005)
    by R Goodacre
    posted to metab new omics by irenas on 2006-01-19 14:13:01 as ** along with 1 person and 1 group daniel_schober dbk-lab
  • The -omics era and its impact.
    Arch Pathol Lab Med, Vol. 128, No. 12. (December 2004), pp. 1337-1345.
    by FL Kiechle, X Zhang, CA Holland-Staley
    posted to omics by irenas on 2005-03-24 11:53:14 as ** along with 1 person and 1 group andytseng dbk-lab
  • The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.
    Nat Biotechnol, Vol. 22, No. 2. (February 2004), pp. 177-183.
    by H Hermjakob, L Montecchi-Palazzi, G Bader, J Wojcik, L Salwinski, A Ceol, S Moore, S Orchard, U Sarkans, C von Mering, B Roechert, S Poux, E Jung, H Mersch, P Kersey, M Lappe, Y Li, R Zeng, D Rana, M Nikolski, H Husi, C Brun, K Shanker, SG Grant, C Sander, P Bork, W Zhu, A Pandey, A Brazma, B Jacq, M Vidal, D Sherman, P Legrain, G Cesareni, I Xenarios, D Eisenberg, B Steipe, C Hogue, R Apweiler
    posted to memo omics prote standard by irenas on 2005-04-07 11:35:12 as ** along with 5 people and 1 group balajis grahamc jmuhlich lpfernandes lenov dbk-lab
  • Metabolomics or metabolite profiles?
    Trends Biotechnol, Vol. 23, No. 8. (August 2005), pp. 385-386.
    by SG Villas-Bôas, S Rasmussen, GA Lane
    posted to metab new omics by irenas on 2006-01-19 14:10:22 as ** along with 2 people and 1 group daniel_schober westoll dbk-lab
  • Potential of metabolomics as a functional genomics tool.
    Trends Plant Sci, Vol. 9, No. 9. (September 2004), pp. 418-425.
    by RJ Bino, RD Hall, O Fiehn, J Kopka, K Saito, J Draper, BJ Nikolau, P Mendes, U Roessner-Tunali, MH Beale, RN Trethewey, BM Lange, ES Wurtele, LW Sumner
    posted to memo metab omics standard by irenas on 2005-03-23 12:27:32 as ** along with 3 people and 1 group katerinakal BIBLIOma pmendes dbk-lab
  • PEDRo: a database for storing, searching and disseminating experimental proteomics data.
    BMC Genomics, Vol. 5, No. 1. (17 September 2004)
    by K Garwood, T McLaughlin, C Garwood, S Joens, N Morrison, CF Taylor, K Carroll, C Evans, AD Whetton, S Hart, D Stead, Z Yin, AJ Brown, A Hesketh, K Chater, L Hansson, M Mewissen, P Ghazal, J Howard, KS Lilley, SJ Gaskell, A Brass, SJ Hubbard, SG Oliver, NW Paton
    posted to model omics xml by irenas on 2004-11-12 15:24:04 along with 4 people and 1 group andytseng dullhunk agileproteomics guhjy dbk-lab
  • Metabolomics: from pattern recognition to biological interpretation.
    Drug Discov Today, Vol. 10, No. 22. (15 November 2005), pp. 1551-1558.
    by W Weckwerth, K Morgenthal
    posted to metab new omics by irenas on 2006-01-19 14:02:40 as ** along with 1 person and 1 group daniel_schober dbk-lab
  • An extensible application for assembling annotation for genomic data.
    Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 155-156.
    by J Zhang, V Carey, R Gentleman
    posted to model omics by irenas on 2005-03-23 12:54:13 as ** along with 1 person and 1 group aalibes dbk-lab
  • Proteomics. Public-private group maps out initiatives.
    Science, Vol. 296, No. 5569. (3 May 2002)
    by J Kaiser
    posted to memo omics prote standard by irenas on 2005-04-07 11:55:33 as ** along with 2 people and 2 groups andytseng fgibson dbk-lab GelML
  • Metabolomics applications of FT-ICR mass spectrometry.
    Mass Spectrom Rev, Vol. 24, No. 2. (r 2005), pp. 223-231.
    by SC Brown, G Kruppa, JL Dasseux
    posted to metab new omics by irenas on 2006-01-19 14:11:02 as ** along with 1 group dbk-lab
  • Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 365-371.
    by A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, C Stoeckert, J Aach, W Ansorge, CA Ball, HC Causton, T Gaasterland, P Glenisson, FC Holstege, IF Kim, V Markowitz, JC Matese, H Parkinson, A Robinson, U Sarkans, S Schulze-Kremer, J Stewart, R Taylor, J Vilo, M Vingron
    posted to memo model omics standard trans by irenas on 2005-04-07 12:34:01 as ** along with 9 people and 3 groups gabe_rosser setar jandot fisherp jeremymiller aconesa sgoetz katerinakal shikin dbk-lab GeschwindLab GeneGo
  • notes Biomedical literature mining: challenges and solutions in the 'omics' era.
    Am J Pharmacogenomics, Vol. 4, No. 6. (2004), pp. 383-393.
    by D Chaussabel
    posted to bib bio med nemam nlp omics txtmining by irenas on 2005-03-23 11:32:20 as ** along with 4 people and 1 group Enro andytseng qfwills daniel_schober dbk-lab
  • Plant metabolomics: large-scale phytochemistry in the functional genomics era.
    Phytochemistry, Vol. 62, No. 6. (March 2003), pp. 817-836.
    by LW Sumner, P Mendes, RA Dixon
    posted to metab new omics by irenas on 2006-01-19 14:04:06 as ** along with 1 person and 1 group pmendes dbk-lab
  • Metabolomics: opening another window into aging.
    Sci Aging Knowledge Environ, Vol. 2005, No. 26. (29 June 2005)
    by BS Kristal, YI Shurubor
    posted to metab new omics by irenas on 2006-01-19 14:09:41 as ** along with 1 group dbk-lab
  • A systematic approach to modeling, capturing, and disseminating proteomics experimental data.
    Nat Biotechnol, Vol. 21, No. 3. (March 2003), pp. 247-254.
    by CF Taylor, NW Paton, KL Garwood, PD Kirby, DA Stead, Z Yin, EW Deutsch, L Selway, J Walker, I Riba-Garcia, S Mohammed, MJ Deery, JA Howard, T Dunkley, R Aebersold, DB Kell, KS Lilley, P Roepstorff, JR Yates, A Brass, AJ Brown, P Cash, SJ Gaskell, SJ Hubbard, SG Oliver
    posted to memo model omics xml by irenas on 2005-03-23 12:46:30 as ** along with 5 people and 3 groups tomhebbron dbk andytseng katerinakal fgibson streptomyces dbk-lab GelML
  • One-stop shop for microarray data.
    Nature, Vol. 403, No. 6771. (17 February 2000), pp. 699-700.
    by A Brazma, A Robinson, G Cameron, M Ashburner
    posted to memo model omics standard trans by irenas on 2005-04-07 12:18:46 as ** along with 1 person and 1 group andytseng dbk-lab
  • Metabolomics in systems biology.
    Annu Rev Plant Biol, Vol. 54 (2003), pp. 669-689.
    by W Weckwerth
    posted to metab omics sysbio by irenas on 2005-03-23 12:45:01 as ** along with 3 people and 2 groups jo_davies Einat katerinakal dbk-lab structural_bioinformatics
  • A functional genomics approach using metabolomics and in silico pathway analysis.
    Biotechnol Bioeng, Vol. 79, No. 7. (30 September 2002), pp. 703-712.
    by J Förster, AK Gombert, J Nielsen
    posted to class memo metab omics by irenas on 2005-03-23 12:49:26 as ** along with 1 group dbk-lab
  • Metabolomics takes its place as latest up-and-coming "omic" science.
    J Natl Cancer Inst, Vol. 96, No. 10. (19 May 2004), pp. 732-734.
    by C Schmidt
    posted to metab omics by irenas on 2005-03-23 12:31:18 as ** along with 1 person and 1 group daniel_schober dbk-lab
  • Summary recommendations for standardization and reporting of metabolic analyses.
    Nat Biotechnol, Vol. 23, No. 7. (July 2005), pp. 833-838.
    by JC Lindon, JK Nicholson, E Holmes, HC Keun, A Craig, JT Pearce, SJ Bruce, N Hardy, SA Sansone, H Antti, P Jonsson, C Daykin, M Navarange, RD Beger, ER Verheij, A Amberg, D Baunsgaard, GH Cantor, L Lehman-McKeeman, M Earll, S Wold, E Johansson, JN Haselden, K Kramer, C Thomas, J Lindberg, I Schuppe-Koistinen, ID Wilson, MD Reily, DG Robertson, H Senn, A Krotzky, S Kochhar, J Powell, F van der Ouderaa, R Plumb, H Schaefer, M Spraul
    posted to metab omics standard by irenas on 2005-07-11 10:20:05 as ***** along with 4 people and 1 group betainverse andytseng daniel_schober BIBLIOma dbk-lab
  • GMD@CSB.DB: the Golm Metabolome Database.
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1635-1638.
    by J Kopka, N Schauer, S Krueger, C Birkemeyer, B Usadel, E Bergmüller, P Dörmann, W Weckwerth, Y Gibon, M Stitt, L Willmitzer, AR Fernie, D Steinhauser
    posted to db memo metab omics by irenas on 2005-04-14 14:13:56 as read along with 2 people and 1 group andytseng daniel_schober dbk-lab
  • High-throughput data analysis for detecting and identifying differences between samples in GC/MS-based metabolomic analyses.
    Anal Chem, Vol. 77, No. 17. (1 September 2005), pp. 5635-5642.
    by P Jonsson, AI Johansson, J Gullberg, J Trygg, J A, B Grung, S Marklund, M Sjöström, H Antti, T Moritz
    posted to metab new omics spectro by irenas on 2006-01-19 14:05:00 as ** along with 1 group dbk-lab
  • Metabolomics and biochemical profiling in drug discovery and development.
    Curr Opin Mol Ther, Vol. 4, No. 3. (June 2002), pp. 224-228.
    by SM Watkins, JB German
    posted to metab new omics by irenas on 2006-01-19 14:17:53 as ** along with 1 group dbk-lab
  • Pedro: a configurable data entry tool for XML.
    Bioinformatics, Vol. 20, No. 15. (12 October 2004), pp. 2463-2465.
    by KL Garwood, CF Taylor, KJ Runte, A Brass, SG Oliver, NW Paton
    posted to memo model omics prote xml by irenas on 2004-11-12 15:23:28 along with 2 people and 1 group andytseng dullhunk dbk-lab
  • Design and implementation of microarray gene expression markup language (MAGE-ML).
    Genome Biol, Vol. 3, No. 9. (23 August 2002)
    by PT Spellman, M Miller, J Stewart, C Troup, U Sarkans, S Chervitz, D Bernhart, G Sherlock, C Ball, M Lepage, M Swiatek, WL Marks, J Goncalves, S Markel, D Iordan, M Shojatalab, A Pizarro, J White, R Hubley, E Deutsch, M Senger, BJ Aronow, A Robinson, D Bassett, CJ Stoeckert, A Brazma
    posted to memo model omics trans xml by irenas on 2004-11-15 14:02:17 along with 3 people and 1 group shikin katerinakal dansullivanblk dbk-lab
  • A common open representation of mass spectrometry data and its application to proteomics research
    Nature Biotechnology, Vol. 22, No. 11. (04 November 2004), 1459.
    by Patrick GA Pedrioli, Jimmy K Eng, Robert Hubley, Mathijs Vogelzang, Eric W Deutsch, Brian Raught, Brian Pratt, Erik Nilsson, Ruth H Angeletti, Rolf Apweiler, Kei Cheung, Catherine E Costello, Henning Hermjakob, Sequin Huang, Randall K Julian, Eugene Kapp, Mark E Mccomb, Stephen G Oliver, Gilbert Omenn, Norman W Paton, Richard Simpson, Richard Smith, Chris F Taylor, Weimin Zhu, Ruedi Aebersold
    posted to memo model omics prote spectro xml by irenas on 2005-03-22 11:48:27 as ** along with 7 people and 1 group talponer lwilliams andytseng agileproteomics Gehrke nedwards alanrw dbk-lab
  • Sequencing and analysis of Neanderthal genomic DNA.
    Science, Vol. 314, No. 5802. (17 November 2006), pp. 1113-1118.
    by JP Noonan, G Coop, S Kudaravalli, D Smith, J Krause, J Alessi, F Chen, D Platt, S Pääbo, JK Pritchard, EM Rubin
    posted to genomics neanderthal omics by ibuch on 2007-11-06 17:23:44 as read along with 9 people and 1 group kaspermunch Archaeogenetics theseuskf biblio24 vplagnol Mochimasa ryanraaum hpaces myourshaw Bioinformatics
  • From XML to RDF: how semantic web technologies will change the design of 'omic' standards
    Nature Biotechnology, Vol. 23, No. 9. (07 September 2005), pp. 1099-1103.
    by Xiaoshu Wang, Robert Gorlitsky, Jonas S Almeida
    posted to bioinformatics omics rdf semanticweb standards xml by ibuch on 2007-08-01 10:49:45 as read along with 10 people and 2 groups irenas andytseng moborg wnpx dullhunk hpiwowar ianturton mza jmuhlich dansullivanblk dbk-lab SorgerLab
  • DAnTE: a statistical tool for quantitative analysis of -omics data
    Bioinformatics (3 May 2008), btn217.
    by Ashoka D Polpitiya, Wei-Jun Qian, Navdeep Jaitly, Vladislav A Petyuk, Joshua N Adkins, David G Camp, Gordon A Anderson, Richard D Smith
    posted to omics statistics by guhjy on 2008-05-18 04:13:38 as ** along with 3 people brianb renatomilani GeeSharpMinor
  • "Omics" research, monetization of intellectual property and fragmentation of knowledge: can clinical epidemiology strengthen integrative research?
    J Clin Epidemiol, Vol. 60, No. 12. (December 2007)
    by M Porta, I Hernández-Aguado, B Lumbreras, M Crous-Bou
    posted to omics by guhjy on 2008-11-11 05:18:35 as ** along with 1 person hpiwowar
  • New paradigm in protein function prediction for large scale omics analysis.
    Molecular bioSystems, Vol. 4, No. 3. (March 2008), pp. 223-231.
    by T Hawkins, M Chitale, D Kihara
    posted to protein omics function by guhjy on 2008-09-05 05:00:56 as **
  • Exon level integration of proteomics and microarray data
    BMC Bioinformatics, Vol. 9 (25 February 2008), 118.
    by Danny A Bitton, Michal J Okoniewski, Yvonne Connolly, Crispin J Miller
    posted to omics by guhjy on 2008-03-01 15:56:43 as ** along with 6 people GeeSharpMinor jo_davies thomaskelder phoenixzxl huali jfr
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