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Tag ode [47 articles]

Recent papers classified by the tag ode.
  • The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks.
    Bioinformatics (9 March 2006)
    by Rainer Machné, Andrew Finney, Stefan Müller, James Lu, Stefanie Widder, Christoph Flamm
    posted to dynamic library modeling ode sbml software solver by wnpx on 2006-09-02 11:28:31 as ** along with 4 people eckart_bindewald ilh mhucka josepe
  • Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments.
    Brief Bioinform (14 November 2006)
    by Natal A W A van Riel
    posted to dt modeling ode by wnpx on 2007-03-18 21:35:16 as ** along with 2 people and 1 group raiyar fishtank steinmetzlab
  • Global parameter optimization for cardiac potassium channel gating models.
    Biophys J, Vol. 57, No. 3. (March 1990), pp. 433-444.
    by JR Balser, DM Roden, PB Bennett
    posted to ode modelling by tomb on 2007-01-30 21:45:03 as ***
  • Mathematical Models In Biology
    (01 January 1988)
    by Leah Edelstein-Keshet
    posted to biology math modelling ode by sstoma on 2008-07-07 18:33:23 as ** along with 1 group VirtualPlants
  • notes Biological pattern formation: from basic mechanisms to complex structures
    Reviews of Modern Physics, Vol. 66, No. 4. (October 1994), 1481.
    by AJ Koch, H Meinhardt
    posted to developement diffusion math ode patterns by sstoma on 2007-06-18 09:40:10 as read along with 1 person and 1 group tyvokka VirtualPlants
  • Understanding NF-[kappa]B signaling via mathematical modeling
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Raymond Cheong, Alexander Hoffmann, Andre Levchenko
    posted to modelling ode signaling by renatomilani on 2008-05-07 19:47:16 as ** along with 3 people ptrobajo Borelli csgillespie
  • Stability of the method of lines
    Numerische Mathematik, Vol. 62, No. 1. (21 December 1992), pp. 235-267.
    by Satish C Reddy, Lloyd N Trefethen
    posted to ode pde scientificcomputing stiffness by rblake on 2007-04-23 17:20:50 as read along with 1 group uiuc-cs
  • notes Stiffness of ODEs
    BIT Numerical Mathematics, Vol. V33, No. 2. (1 June 1993), pp. 285-303.
    by Desmond J Higham, Lloyd N Trefethen
    posted to ode scientificcomputing stiffness by rblake on 2007-02-23 03:59:48 as read along with 1 group uiuc-cs
  • Numerical analysis of the master equation
    (26 Oct 2001)
    by Ronald Dickman
    posted to ode master_equation markov by rblake on 2008-10-30 21:49:43 as **
  • Reaction kinetics in intracellular environments with macromolecular crowding: simulations and rate laws.
    Prog Biophys Mol Biol, Vol. 85, No. 2-3. (l 2004), pp. 235-260.
    by S Schnell, TE Turner
    posted to crowding ode rates simulation by ras on 2008-03-19 18:17:49 as **** along with 3 people and 1 group m_j schnell csanford IU_Informatics_CX
  • A comparison of non-standard solvers for ODEs describing cellular reactions in the heart
    Computer Methods in Biomechanics and Biomedical Engineering, Vol. 10, No. 5. (October 2007), pp. 317-326.
    by Maclachlan, Mary, Sundnes, Joakim, Spiteri, Raymond
    posted to implicit nsfd ode by plank on 2008-04-08 10:00:48 as read along with 1 person vgurev
  • LSODE and LSODI, two new initial value ordinary differnetial equation solvers
    SIGNUM Newsl., Vol. 15, No. 4. (December 1980), pp. 10-11.
    by Alan C Hindmarsh
    posted to algorithm mathematics ode by muraken on 2007-03-07 18:05:03 as ** along with 1 person dagmar
  • Automatic Selection of Methods for Solving Stiff and Nonstiff Systems of Ordinary Differential Equations
    SIAM Journal on Scientific and Statistical Computing, Vol. 4, No. 1. (1983), pp. 136-148.
    by Linda Petzold
    posted to algorithm mathematics ode by muraken on 2007-03-07 18:07:20 as ** along with 2 people and 1 group dagmar pmendes compneur
  • Numerical Algorithms with C
    (02 July 1996)
    by Giesela Engeln-Müllges, Frank Uhlig
    posted to algorithm integration leapfrog numeric ode predictor-corrector runge-kutta step verlet by michaelbussmann on 2008-02-28 15:44:54 as read
  • The use of genetic algorithms for the development of sensorimotor control systems
    From Perception to Action Conference, 1994., Proceedings (1994), pp. 110-121.
    by P Husbands, I Harvey, D Cliff, G Miller
    posted to 94 ga genetic-algorithm neuroevolution ode by mahmoodr on 2008-08-08 11:15:56 as **
  • Analysis of global control of Escherichia coli carbohydrate uptake.
    BMC systems biology, Vol. 1, No. 42. (2007)
    by A Kremling, K Bettenbrock, ED Gilles
    posted to modelling ode systemsbiology by lukaswindhager on 2008-05-08 16:46:27 as read
  • Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2396-2405.
    by DE Zak, GE Gonye, JS Schwaber, FJ Doyle
    posted to modelling ode systemsbiology by lukaswindhager on 2008-05-09 12:18:47 as read along with 5 people ryang wnpx jrbanga bertelsen aheilbut
  • Modelling the dynamics of the yeast pheromone pathway.
    Yeast, Vol. 21, No. 10. (30 July 2004), pp. 831-850.
    by B Kofahl, E Klipp
    posted to modelling ode pheromone systemsbiology yeast by lukaswindhager on 2008-05-08 14:59:16 as read along with 2 people tmt pmendes
  • The branching problem in generalized power solutions to differential equations
    Mathematics and Computers in Simulation, Vol. 67, No. 1-2. (3 September 2004), pp. 45-54.
    by Alejandro S Jakubi
    posted to math methods numerical ode by josepe on 2007-05-13 02:55:08 as **
  • Bifurcations of plane wave (CW) solutions in the complex cubic-quintic Ginzburg-Landau equation
    Mathematics and Computers in Simulation, Vol. 74, No. 4-5. (30 March 2007), pp. 266-280.
    by Stefan C Mancas, Choudhury
    posted to bifurcation chaos dynamical ode oscillations pde systems waves by josepe on 2007-05-12 23:34:02 as **
  • Numerical solution of differential equations using Haar wavelets
    Mathematics and Computers in Simulation, Vol. 68, No. 2. (20 April 2005), pp. 127-143.
    by U Lepik
    posted to methods numerical ode pde wavelets by josepe on 2007-05-13 02:57:54 as **
  • Parameter independent model order reduction
    Mathematics and Computers in Simulation, Vol. 68, No. 3. (1 May 2005), pp. 221-234.
    by Lihong Feng
    posted to complexity math methods numerical ode by josepe on 2007-05-13 02:58:50 as **
  • A First Course in Differential Equations
    (14 May 2008)
    by Dennis G Zill
    posted to pde ode book by jjrohal on 2008-10-01 05:35:25 as read
  • Comparing Partial Consistencies
    (1999), pp. 213-228.
    by Fran\ccois, Michel Rueher
    edited by Tibor Csendes
    posted to constraint interval ode by ishii on 2006-06-19 11:23:46 as **
  • A Constraint Satisfaction Approach for Enclosing Solutions to Parametric Ordinary Differential Equations
    No. CS-01-05. (2001)
    by Micha Janssen, Pascal Van Hentenryck, Yves Deville
    posted to constraint interval ode by ishii on 2006-06-19 11:19:05 as **
  • Consistency Techniques in Ordinary Differential Equations
    Lecture Notes in Computer Science, Vol. 1520 (1998), pp. 162-??.
    by Yves Deville, Micha Janssen, Pascal Van Hentenryck
    posted to constraint interval ode by ishii on 2006-06-19 11:21:11 as **
  • Propagation completeness of reactive constraints
    (2002)
    by M Maher
    posted to constraint interval ode by ishii on 2006-06-19 11:30:42 as **
  • Nonlinear oscillations in a MEMS energy scavenger
    Mathematical and Computer Modelling, Vol. 43, No. 11-12. (June 2006), pp. 1412-1423.
    by F Peano, G Coppa, C Serazio, F Peinetti, A D'Angola
    posted to capacitive electret nonlinear ode by ingedwar on 2007-06-14 06:36:11 as **
  • Schemes of flux control in a model of Saccharomyces cerevisiae glycolysis.
    Eur J Biochem, Vol. 269, No. 16. (August 2002), pp. 3894-3904.
    by L Pritchard, DB Kell
    posted to coefficients control mca modelling ode by dbk to the group streptomyces on 2004-11-13 13:28:15 along with 2 people and 1 group LeightonP dullhunk dbk-lab
  • Mathematical and computational techniques to deduce complex biochemical reaction mechanisms.
    Progress in Biophysics and Molecular Biology, Vol. 86, No. 1. (September 2004), pp. 77-112.
    by EJ Crampin, S Schnell, PE Mcsharry
    posted to ode by dagmar to the group compneur on 2007-08-04 15:14:05 as ** along with 3 people and 3 groups alexr aheilbut schnell Autoregulation IU_Informatics_CX dIEMoSIRIS
  • Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell.
    Curr Opin Cell Biol, Vol. 15, No. 2. (April 2003), pp. 221-231.
    by JJ Tyson, KC Chen, B Novak
    posted to pathways ode modularity dynamic by carmaus to the group MoSi-Rostock on 2007-07-30 07:44:18 as ** along with 5 people and 4 groups camster rklancer monod rhem1224 bayesian dbk-lab TCR_Signaling SysbioMPI-TCells dIEMoSIRIS
  • Integration of Stiff Equations.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 38, No. 3. (March 1952), pp. 235-243.
    by CF Curtiss, JO Hirschfelder
    posted to math numerical ode sstoma by sstoma to the group VirtualPlants on 2008-04-09 13:43:55 as **
  • Transition to chaos in nonlinear dynamical systems described by ordinary differential equations
    Computational Mathematics and Modeling, Vol. 18, No. 2. (12 April 2007), pp. 128-147.
    by N Magnitskii, S Sidorov
    posted to chaos dynamics nonlinear ode by dylan77 on 2007-04-23 05:58:32 as **
  • On smooth dependence on initial conditions for dissipative PDEs, an ODE-type approach
    Journal of Differential Equations, Vol. 195, No. 2. (10 December 2003), pp. 271-283.
    by Piotr Zgliczynski
    posted to navierstokes ode by dguibert on 2006-04-22 12:40:55 as **
  • Parameter estimation of high-dimensional linear differential equations
    (27 Apr 2008)
    by Heng Lian
    posted to arxiv lasso ode parameter_estimation scad sysbio by dah on 2008-04-29 09:55:51 as **
  • Simulating cell biology.
    Curr Biol, Vol. 16, No. 14. (25 July 2006)
    by SS Andrews, AP Arkin
    posted to ode simulation_algorithms by dagmar on 2007-11-26 17:06:33 as ** along with 1 person heliopais
  • notes Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i70-75.
    by Pei Gao, Antti Honkela, Magnus Rattray, Neil D Lawrence
    posted to uncertainty transcription-factor ode modeling microarray latent analysis by bertelsen on 2008-11-19 12:44:09 as ****
  • Introduction to the Galois Theory of Linear Differential Equations
    (26 Dec 2007)
    by Michael F Singer
    posted to algebra algorithm category-theory linear-equation ode by ansobol on 2007-12-28 09:05:11 as ** along with 3 people yakovenko jrw proportional
  • Transport equation: extension of classical results for div $b∈$ BMO
    (11 Jun 2008)
    by Piotr B Mucha
    posted to nonsmooth ode pde transport by ansobol on 2008-06-15 09:19:00 as **
  • On periodic boundary value problem for the Sturm-Liouville operator
    (18 Jan 2006)
    by Alexander Makin
    posted to 1d fourier-transform ode periodic sturm-liouville by ansobol on 2006-01-19 10:41:47 as **
  • Towards a Theory of Chaos Explained as Travel on Riemann Surfaces
    (27 May 2008)
    by F Calogero, D Gomez-Ullate, P Santini, M Sommacal
    posted to chaos complex-variable dynamical-system ode riemann-surface-complex by ansobol on 2008-06-15 09:59:45 as **
  • A quantitative investigation into the accumulation of rounding errors in the numerical solution of ODEs
    (15 Dec 2005)
    by Sebastian Mosbach, Amanda G Turner
    posted to chaos numerical ode rounding-error by ansobol on 2005-12-16 17:54:44 as **
  • Ordinary differential equations which linearize on differentiation
    (26 Aug 2006)
    by EV Ferapontov, SR Svirshchevskii
    posted to veselov linear ode by ansobol on 2006-08-29 20:23:08 as **
  • Towards a new ODE-solver based on Cartan's method
    (30 Nov 2007)
    by Raouf Dridi, Michel Petitot
    posted to numerical ode by ansobol on 2007-12-04 19:20:47 as **
  • Linearizable ordinary differential equations
    (26 Oct 2007)
    by Hector Giacomini, Jaume Gine, Maite Grau
    posted to integrable linear ode by ansobol on 2007-10-30 19:46:02 as ** along with 1 person yakovenko
  • Differential equations driven by H\
    (1 Feb 2006)
    by Yaozhong
    posted to fbm hoelder hurst ode stochastic-ode by ansobol on 2006-02-02 08:51:12 as **
  • Uniqueness of the particle trajectories of the weak solutions of the two-dimensional Navier-Stokes equations
    (30 Oct 2007)
    by Masoumeh Dashti, James C Robinson
    posted to 2d navier-stokes nonsmooth ode by ansobol on 2007-11-01 11:23:49 as **
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