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Tag network_motif [29 articles]

Recent papers classified by the tag network_motif.
  • Network motifs: simple building blocks of complex networks.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827.
    by R Milo, S Shen-Orr, S Itzkovitz, N Kashtan, D Chklovskii, U Alon
    posted to network_motif by tny on 2006-04-10 07:35:26 as ** along with 42 people and 8 groups galyardt cswinburne mullonc camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Evangelia roys tfogal zibuyu maralena stefanoallesina pbull cmor renatomilani shikin carlk applesnow subhacom i-stevenson ethkim Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes GeneGo
  • Dynamic Properties of Network Motifs Contribute to Biological Network Organization.
    PLoS Biol, Vol. 3, No. 11. (4 October 2005)
    by Robert J J Prill, Pablo A A Iglesias, Andre Levchenko
    posted to network_motif by phoenixzxl on 2008-06-10 15:29:16 as ** along with 10 people and 1 group tmmurali monod textoris bayesian luispedro xinian jdiggans watson stefanoallesina marck NeuralNetworks
  • A review on models and algorithms for motif discovery in protein-protein interaction networks
    Brief Funct Genomic Proteomic (28 April 2008), eln015.
    by Giovanni Ciriello, Concettina Guerra
    posted to network_motif network_ppi by phoenixzxl on 2008-06-10 13:34:50 as **
  • Network motif analysis of a multi-mode genetic-interaction network
    Genome Biology, Vol. 8 (02 August 2007), R160.
    by James R Taylor, Andrew F Siegel, Timothy Galitski
    posted to network_motif by phoenixzxl on 2008-06-03 11:08:50 as ** along with 3 people tmmurali maralena marck
  • Detection of topological patterns in complex networks: correlation profile of the internet
    Physica A: Statistical and Theoretical Physics, Vol. 333 (15 February 2004), pp. 529-540.
    by Sergei Maslov, Kim Sneppen, Alexei Zaliznyak
    posted to network_dynamic network_motif by phoenixzxl on 2008-06-06 08:06:21 as ** along with 2 people gcalda cjeans
  • Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network.
    Proc Natl Acad Sci U S A, Vol. 100, No. 23. (11 November 2003), pp. 13134-13139.
    by I Famili, J Forster, J Nielsen, BO Palsson
    posted to metabolic network_motif phenotype reconstruction by koller on 2006-08-31 06:47:37 as *** along with 1 person JeremyZucker
  • Target hub proteins serve as master regulators of development in yeast.
    Genes Dev, Vol. 20, No. 4. (15 February 2006), pp. 435-448.
    by AR Borneman, JA Leigh-Bell, H Yu, P Bertone, M Gerstein, M Snyder
    posted to network network_motif regulatory by koller on 2006-08-31 01:37:20 as *** along with 3 people and 1 group nickluscombe aswin carlk EBI-regulation
  • Role of duplicate genes in genetic robustness against null mutations
    Nature, Vol. 421, No. 6918. (2 January 2003), pp. 63-66.
    by Zhenglong Gu, Lars M Steinmetz, Xun Gu, Curt Scharfe, Ronald W Davis, Wen-Hsiung Li
    posted to evolution network network_motif regulatory by koller on 2006-08-25 23:31:42 as *** along with 3 people and 1 group cite0000 lingchong adepace EisenLab
  • The regulatory utilization of genetic redundancy through responsive backup circuits.
    Proc Natl Acad Sci U S A (21 July 2006)
    by Ran Kafri, Melissa Levy, Yitzhak Pilpel
    posted to evolution network network_motif regulatory by koller on 2006-08-25 23:17:32 as **** along with 2 people cconboy lshaw
  • Effect of sampling on topology predictions of protein-protein interaction networks
    Nature Biotechnology, Vol. 23, No. 7. (07 July 2005), pp. 839-844.
    by Jing-Dong J Han, Denis Dupuy, Nicolas Bertin, Michael E Cusick, Marc Vidal
    posted to network network_motif noise p2p by koller on 2006-08-31 02:22:00 as *** along with 11 people snuppepuppan kuhn rabbat gurkanbebek eukfn mikaelhuss grahamc cjeans iris_2001 paolomarcatili carlk
  • Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes.
    PLoS Comput Biol, Vol. 2, No. 8. (4 August 2006)
    by C Haynes, CJ Oldfield, F Ji, N Klitgord, ME Cusick, P Radivojac, VN Uversky, M Vidal, LM Iakoucheva
    posted to network network_motif p2p sequence_motif by koller on 2006-08-31 02:48:06 as *** along with 3 people and 1 group agustinarce indigoviolet carlk EisenLab
  • Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae.
    Genome Res, Vol. 16, No. 5. (May 2006), pp. 627-635.
    by MJ Herrgård, BS Lee, V Portnoy, BØ Palsson
    posted to chip2 metabolic network network_motif reconstruction regulatory transcription by koller on 2006-08-31 06:35:02 as **** along with 7 people and 3 groups JeremyZucker nickluscombe aswin kengg raiyar cjeans edwardmorrissey EBI-regulation steinmetzlab Plantandetc
  • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    Nature, Vol. 430, No. 6995. (01 July 2004), pp. 88-93.
    by Jing-Dong J Han, Nicolas Bertin, Tong Hao, Debra S Goldberg, Gabriel F Berriz, Lan V Zhang, Denis Dupuy, Albertha JM Walhout, Michael E Cusick, Frederick P Roth, Marc Vidal
    posted to dynamic network network_motif p2p by koller on 2006-08-31 02:19:04 as **** along with 24 people and 2 groups davidecellai dragonrez lfriedl balajis yoh j3xucite kintoki mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer Evangelia cdeane shung phoenixzxl stefanoallesina ellakat frohike shikin ksiek carlk kdl GeneGo
  • Core transcriptional regulatory circuitry in human embryonic stem cells.
    Cell, Vol. 122, No. 6. (23 September 2005), pp. 947-956.
    by LA Boyer, TI Lee, MF Cole, SE Johnstone, SS Levine, JP Zucker, MG Guenther, RM Kumar, HL Murray, RG Jenner, DK Gifford, DA Melton, R Jaenisch, RA Young
    posted to chip2 cis-regulation network network_motif reconstruction by koller on 2006-08-25 21:02:21 as *** along with 13 people rklancer kentsis tardigrade balicea tabu cconboy Stew faisalm mikaelhuss tdmckee brant dquest kengg
  • The synthetic genetic interaction spectrum of essential genes
    Nat Genet, Vol. 37, No. 10. (October 2005), pp. 1147-1152.
    by Armaity P Davierwala, Jennifer Haynes, Zhijian Li, Renee L Brost, Mark D Robinson, Lisa Yu, Sanie Mnaimneh, Huiming Ding, Hongwei Zhu, Yiqun Chen, Xin Cheng, Grant W Brown, Charles Boone, Brenda J Andrews, Timothy R Hughes
    posted to genetic-inter network network_motif by koller on 2006-08-31 02:51:27 as *** along with 7 people and 2 groups tmmurali textoris okarsligil nirfriedman nickluscombe patrycjam patrycja_missiuro Bioinformatics EBI-regulation
  • Design principles of molecular networks revealed by global comparisons and composite motifs
    Genome Biology, Vol. 7 (19 July 2006), R55.
    by Haiyuan Yu, Yu Xia, Valery Trifonov, Mark Gerstein
    posted to metabolic network network_motif p2p regulatory by koller on 2006-09-11 05:32:17 as *** along with 5 people and 2 groups indigoviolet jdiggans Takayuki beete vertikalist EisenLab BTS-PT-AS-CS
  • Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: large-scale organization and robustness.
    Proteomics, Vol. 6, No. 2. (January 2006), pp. 456-461.
    by D Li, J Li, S Ouyang, J Wang, S Wu, P Wan, Y Zhu, X Xu, F He
    posted to network network_motif p2p by koller on 2006-08-29 17:57:22 as ** along with 3 people and 1 group tharris tny mmt C. elegans / WormBase
  • Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks.
    J Mol Biol, Vol. 360, No. 1. (30 June 2006), pp. 204-212.
    by S Balaji, LM Iyer, L Aravind, MM Babu
    posted to network network_motif regulatory transcription by koller on 2006-08-25 23:38:33 as *** along with 1 person mmt
  • Dynamics of the p53-Mdm2 feedback loop in individual cells.
    Nat Genet, Vol. 36, No. 2. (February 2004), pp. 147-150.
    by G Lahav, N Rosenfeld, A Sigal, N Geva-Zatorsky, AJ Levine, MB Elowitz, U Alon
    posted to biochemical dynamic network_motif regulatory by koller on 2006-08-26 00:29:45 as ** along with 5 people and 2 groups rklancer aheilbut bayesian mattjb ucbpdku ComplexAdaptiveSystems DSTO-CAS
  • Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae.
    Nat Biotechnol, Vol. 22, No. 1. (January 2004), pp. 86-92.
    by J Ihmels, R Levy, N Barkai
    posted to metabolic network network_motif regulatory transcription by koller on 2006-08-25 22:39:58 as **** along with 7 people and 4 groups icases adepace nickluscombe arne shung hryk siebert EisenLab EBI-regulation TNT dIEMoSIRIS
  • Transcriptional reprogramming and backup between duplicate genes: is it a genomewide phenomenon?
    Genetics, Vol. 172, No. 2. (February 2006), pp. 1363-1367.
    by X He, J Zhang
    posted to evolution network network_motif regulatory transcription by koller on 2006-08-25 23:29:56 as ****
  • Systems-level analyses identify extensive coupling among gene expression machines
    Mol Syst Biol, Vol. 2, No. 1. (17 January 2006), pp. msb4100045-E1-msb4100045-E14.
    by Karolina Maciag, Steven J Altschuler, Michael D Slack, Nevan J Krogan, Andrew Emili, Jack F Greenblatt, Tom Maniatis, Lani F Wu
    posted to network network_motif p2p reconstruction by koller on 2006-08-25 21:58:20 as ** along with 2 people tmmurali tuck
  • Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network.
    J Biol, Vol. 4, No. 2. (2005)
    by LV Zhang, OD King, SL Wong, DS Goldberg, AH Tong, G Lesage, B Andrews, H Bussey, C Boone, FP Roth
    posted to expression genetic-inter network network_motif p2p transcription by koller on 2006-08-31 06:58:25 as *** along with 10 people and 1 group lfriedl marcora jjray ssb benny nirfriedman iris_2001 gwcarter carlk ksiek kdl
  • Domains, Motifs, and Scaffolds: The Role of Modular Interactions in the Evolution and Wiring of Cell Signaling Circuits.
    Annu Rev Biochem (17 March 2006)
    by Roby P P Bhattacharyya, Attila Reményi, Brian J J Yeh, Wendell A A Lim
    posted to evolution network network_motif regulatory review signaling by koller on 2006-08-26 01:20:37 as *** along with 9 people laurabailey rklancer matzke imouthesmp choonpeng cjeans melting carlk gulkur
  • Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction.
    Proc Natl Acad Sci U S A, Vol. 101, No. 16. (20 April 2004), pp. 5934-5939.
    by E Yeger-Lotem, S Sattath, N Kashtan, S Itzkovitz, R Milo, RY Pinter, U Alon, H Margalit
    posted to network network_motif p2p regulatory by koller on 2006-09-11 06:37:45 as ** along with 9 people and 4 groups camster snuppepuppan dbk korakot LeightonP hununu jtextori maralena carlk streptomyces Philosophy_of_Information dbk-lab Blog_and_Wiki_Research
  • Core transcriptional regulatory circuitry in human hepatocytes.
    Mol Syst Biol, Vol. 2 (2006)
    by DT Odom, RD Dowell, ES Jacobsen, L Nekludova, PA Rolfe, TW Danford, DK Gifford, E Fraenkel, GI Bell, RA Young
    posted to cis-regulation network network_motif regulatory by koller on 2006-09-19 01:35:52 as ** along with 5 people and 1 group Schmidtc cconboy kengg jdiggans gdb Plantandetc
  • Network motifs: theory and experimental approaches
    Nature Reviews Genetics, Vol. 8, No. 6., pp. 450-461.
    by Uri Alon
    posted to motif network network_motif by cmmorel on 2007-05-24 13:18:28 as ** along with 17 people and 4 groups cswinburne dlobo kentz icases aalibes jtaylor dbikard margaritis shigepong zwang grinfish Pascalichouchou xingxu karfunkel vietanh0 haarcuba Borelli GEB TNT Centre de Recherches Interdisciplinaires SynBioSys
  • Spontaneous evolution of modularity and network motifs.
    Proc Natl Acad Sci U S A, Vol. 102, No. 39. (20 September 2005), pp. 13773-13778.
    by Nadav Kashtan, Uri Alon
    posted to network_motif networks systems_biology by alexg on 2005-10-24 15:18:46 as ** along with 15 people and 6 groups mcphee marimo monod Borelli i41m cmm Peterfine javierFellow rgb mattjb rebeccamancy cwr phreeza stefanoallesina carlk MathBio FAB-lab ComplexAdaptiveSystems pileWorks DSTO-CAS ColDyn
  • Structure and function of the feed-forward loop network motif.
    Proc Natl Acad Sci U S A, Vol. 100, No. 21. (14 October 2003), pp. 11980-11985.
    by S Mangan, U Alon
    posted to network_motif networks by alexg on 2005-10-24 15:17:36 as ** along with 12 people and 3 groups camster rklancer korakot zqshen jstajic jjray balicea ddahlem jtaylor gcalda marck hannahrajasingh Philosophy_of_Information dbk-lab Blog_and_Wiki_Research
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