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Tag module [100 articles]

Recent papers classified by the tag module.
  • From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions
    Mol Syst Biol, Vol. 4 (15 July 2008)
    by Igor Ulitsky, Tomer Shlomi, Martin Kupiec, Ron Shamir
    posted to module interaction genetic by zwang on 2008-07-22 06:55:53 as **
  • Pairing of competitive and topologically distinct regulatory modules enhances patterned gene expression
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Itai Yanai, Ryan L Baugh, Jessica J Smith, Casey Roehrig, Shai S Shen-Orr, Julia M Claggett, Andrew A Hill, Donna K Slonim, Craig P Hunter
    posted to geneexpression module regulatory by zwang on 2008-02-17 10:41:25 as ** along with 1 person roys
  • MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e216.
    by Saurabh Sinha, Xin He
    posted to alignment hmm modeling module regulatory by zwang on 2007-12-10 04:29:31 as *** along with 7 people and 2 groups ana dpollard cjeans maximilianh hpaces Ema uwe EisenLab cis-regulatory-evolution
  • Distributed modules for text annotation and IE applied to the biomedical domain
    International Journal of Medical Informatics, Vol. In Press, Corrected Proof
    by Harald Kirsch, Sylvain Gaudan, Dietrich Rebholz-Schuhmann
    posted to textmining ner module java ie component by yggdrasil on 2008-04-23 10:30:26 as ** along with 3 people and 2 groups irenas yas gaudan dbk-lab T_lab
  • Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.
    Nat Genet, Vol. 34, No. 2. (June 2003), pp. 166-176.
    by E Segal, M Shapira, A Regev, D Pe'er, D Botstein, D Koller, N Friedman
    posted to data expression gene module networks by wnpx on 2006-04-18 14:38:44 as ** along with 13 people chrisamiller pkm tvdbulck dragonrez tuck bayesian tabu koller olympos fishtank dimatura karfunkel roys
  • Transcriptional Regulation by Competing Transcription Factor Modules
    PLoS Computational Biology, Vol. 2, No. 12. (1 December 2006), e164.
    by Rutger Hermsen, Sander Tans, Ten
    posted to gene module network regulation by wnpx on 2007-01-06 18:22:41 as ** along with 3 people nirfriedman zwang nklee
  • A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules
    Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255.
    by Joshua M Stuart, Eran Segal, Daphne Koller, Stuart K Kim
    posted to gene module network by wnpx on 2006-07-30 16:45:34 as ** along with 13 people and 5 groups dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav neveaire macle raylim lp2 karfunkel kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience
  • Computational discovery of gene modules and regulatory networks.
    Nat Biotechnol, Vol. 21, No. 11. (November 2003), pp. 1337-1342.
    by Z Bar-Joseph, GK Gerber, TI Lee, NJ Rinaldi, JY Yoo, F Robert, DB Gordon, E Fraenkel, TS Jaakkola, RA Young, DK Gifford
    posted to gene module network regulation by wnpx on 2006-01-03 18:45:33 as ** along with 12 people and 1 group balicea dquest carlk tvdbulck ggrot dragonrez bayesian nickluscombe koller frohike karfunkel roys EBI-regulation
  • A Novel Computational Approach for the Prediction of Networked Transcription Factors of Aryl Hydrocarbon-Receptor-Regulated Genes
    Mol Pharmacol, Vol. 66, No. 6. (1 December 2004), pp. 1557-1572.
    by Alexander Kel, Susanne Reymann, Volker Matys, Paul Nettesheim, Edgar Wingender, Jurgen Borlak
    posted to genetic_algorithm module transcription by tuck on 2005-12-30 01:18:30 as **
  • Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors,
    Journal of Molecular Biology, Vol. 309, No. 1. (25 May 2001), pp. 99-120.
    by Alexander E Kel, Olga V Kel-Margoulis, Peggy J Farnham, Stephanie M Bartley, Edgar Wingender, Michael Q Zhang
    posted to module regulation transcription transcription_factor by tuck on 2006-03-06 02:13:51 as ** along with 1 person nklee
  • An introduction to plant demography with special reference to New Zealand trees.
    New Zealand Journal of Botany, Vol. 23, No. 4. (1985), pp. 751-772.
    by J Ogden
    posted to demography module by Stockman on 2008-04-22 06:09:19 as **
  • Searching for statistically significant regulatory modules.
    Bioinformatics, Vol. 19 Suppl 2 (October 2003)
    by TL Bailey, WS Noble
    posted to cis-regulatory methods module motif by stajich on 2007-12-05 18:30:08 as ** along with 2 people and 2 groups xili03 indigoviolet EisenLab Berkeley Mycology
  • Validating module network learning algorithms using simulated data
    BMC Bioinformatics, Vol. 8, No. Suppl 2. (2007)
    by Tom Michoel, Steven Maere, Eric Bonnet, Anagha Joshi, Yvan Saeys, Tim Van den Bulcke, Koenraad Van Leemput, Piet van Remortel, Martin Kuiper, Kathleen Marchal, Yves Van de Peer
    posted to module networkestimation by shigepong on 2007-05-13 07:31:49 as ***** along with 4 people and 2 groups mattjb ajgentles erbon vietanh0 DSTO-CAS ComplexAdaptiveSystems
  • Learning probabilistic models of cis-regulatory modules that represent logical and spatial aspects.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007)
    by K Noto, M Craven
    posted to module by shigepong on 2007-01-26 10:23:09 as **
  • Tissue-driven hypothesis of genomic evolution and sequence-expression correlations.
    Proc Natl Acad Sci U S A (14 February 2007)
    by Xun Gu, Zhixi Su
    posted to module system by shigepong on 2007-02-23 21:56:00 as **** along with 4 people xwbcn gpalidwor cjeans ghattem
  • Detecting Program Modules with Low Testability
    pp. 242-250.
    by TM Khoshgoftaar, RM Szabo, JM Voas
    posted to epistemology measure measurement module survivability test testability by scis0000001 on 2006-10-07 15:23:20 as **
  • Network motifs: simple building blocks of complex networks.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827.
    by R Milo, S Shen-Orr, S Itzkovitz, N Kashtan, D Chklovskii, U Alon
    posted to network module by renatomilani on 2008-06-20 19:39:16 as ** along with 38 people and 8 groups subhacom cmor carlk pbull i-stevenson applesnow shikin camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Evangelia roys tfogal zibuyu maralena stefanoallesina GeneGo Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes
  • The identification of functional modules from the genomic association of genes.
    Proc Natl Acad Sci U S A, Vol. 99, No. 9. (30 April 2002), pp. 5890-5895.
    by B Snel, P Bork, MA Huynen
    posted to protein network module function by renatomilani on 2008-06-20 19:31:56 as ** along with 3 people ujh ichbins81 karfunkel
  • Function prediction and protein networks
    Current Opinion in Cell Biology, Vol. 15, No. 2. (April 2003), pp. 191-198.
    by Martijn A Huynen, Berend Snel, Christian Mering, Peer Bork
    posted to protein network module function by renatomilani on 2008-06-20 19:27:50 as **
  • Biomolecular network motif counting and discovery by color coding
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i241-249.
    by Noga Alon, Phuong Dao, Iman Hajirasouliha, Fereydoun Hormozdiari, Cenk S Sahinalp
    posted to network module bioinformatics by renatomilani on 2008-06-27 16:16:16 as **
  • Identifying functional modules in protein-protein interaction networks: an integrated exact approach
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i223-231.
    by Marcus T Dittrich, Gunnar W Klau, Andreas Rosenwald, Thomas Dandekar, Tobias Muller
    posted to protein network module interaction bioinformatics by renatomilani on 2008-06-27 16:14:43 as ** along with 2 people chad_davis marck
  • Deducing topology of protein-protein interaction networks from experimentally measured sub-networks
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ling Yang, Thomas Vondriska, Zhangang Han, Robb Maclellan, James Weiss, Zhilin Qu
    posted to protein network module interaction by renatomilani on 2008-07-04 18:49:31 as ** along with 2 people brianb neils
  • A 4×8 APD array, consisting of two monolithic silicon wafers, coupled to a 32-channel LSO matrix for high-resolution PET
    Nuclear Science, IEEE Transactions on, Vol. 48, No. 4. (2001), pp. 1391-1396.
    by BJ Pichler, F Bernecker, G Boning, M Rafecas, W Pimpl, M Schwaiger, E Lorenz, SI Ziegler
    posted to apd characterization crosstalk detector energy high lso module resolution scintillator by rbmoura on 2008-03-31 12:25:55 as **
  • Calibration of a PEM detector with depth of interaction measurement
    Nuclear Science, IEEE Transactions on, Vol. 51, No. 3. (2004), pp. 775-781.
    by GC Wang, JS Huber, WW Moses, WS Choong, JS Maltz
    posted to calibration crystal detector doi energy module pem pixel by rbmoura on 2008-04-04 17:35:19 as **
  • Study of spatial resolution and depth of interaction of APD-based PET detector modules using light sharing schemes
    Nuclear Science, IEEE Transactions on, Vol. 50, No. 5. (2003), pp. 1415-1419.
    by P Bruyndonckx, S Leonard, Jiangui Liu, S Tavernier, P Szupryczynski, A Fedorov
    posted to apd detector doi light module pet resolution spatial by rbmoura on 2008-04-07 15:37:44 as **
  • Performance and quality control of Clear-PEM detector modules
    Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Vol. 580, No. 2. (1 October 2007), pp. 1123-1126.
    by Pedro Amaral, Bruno Carriço, Miguel Ferreira, Rui Moura, Catarina Ortigão, Pedro Rodrigues, José C Da Silva, Andreia Trindade, João Varela
    posted to quality performance modules module measurement detector control clearpem characterization by rbmoura on 2008-06-12 18:41:54 as **
  • Clear-PEM: A PET imaging system dedicated to breast cancer diagnostics
    Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Vol. 571, No. 1-2. (1 February 2007), pp. 81-84.
    by MC Abreu, D Aguiar, E Albuquerque, FG Almeida, P Almeida, P Amaral, E Auffray, P Bento, P Bruyndonckx, R Bugalho, B Carrico, H Cordeiro, M Ferreira, NC Ferreira, F Goncalves, P Lecoq, C Leong, F Lopes, P Lousa, J Luyten, MV Martins, N Matela, PR Mendes, R Moura, J Nobre, N Oliveira, C Ortigao, L Peralta, J Rego, R Ribeiro, P Rodrigues, AI Santos, JC Silva, MM Silva, S Tavernier, IC Teixeira, JP Teixeira, A Trindade, J Trummer, J Varela
    posted to apd breast cancer clearpem dae daq design lyso matrix module pem system by rbmoura on 2008-04-04 12:44:11 as ** along with 1 person danabl
  • An LSO scintillator array for a PET detector module with depth of interaction measurement
    Nuclear Science, IEEE Transactions on, Vol. 48, No. 3. (2001), pp. 684-688.
    by JS Huber, WW Moses, MS Andreaco, O Petterson
    posted to array detector doi lso measurement module pet scintillator by rbmoura on 2008-04-07 12:14:59 as **
  • Extracting expression modules from perturbational gene expression compendia
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Steven Maere, Patrick Van Dijck, Martin Kuiper
    posted to perturbation module knockout emiel compendium by ptrobajo on 2008-06-05 13:49:21 as ** along with 2 people lp2 barriot
  • Module-based outcome prediction using breast cancer compendia.
    PLoS ONE, Vol. 2, No. 10. (2007)
    by MH van Vliet, CN Klijn, LF Wessels, MJ Reinders
    posted to cancer classification geneset module by ptrobajo on 2008-03-30 23:25:03 as *** along with 2 people jfr macavity1g
  • A functional and regulatory map of asthma.
    American journal of respiratory cell and molecular biology, Vol. 38, No. 3. (March 2008), pp. 324-336.
    by N Novershtern, Z Itzhaki, O Manor, N Friedman, N Kaminski
    posted to regulatory pathways mouse module asthma by ptrobajo on 2008-06-18 08:31:28 as **
  • Revealing targeted therapy for human cancer by gene module maps.
    Cancer research, Vol. 68, No. 2. (15 January 2008), pp. 369-378.
    by DJ Wong, DS Nuyten, A Regev, M Lin, AS Adler, E Segal, MJ van de Vijver, HY Chang
    posted to module map cancer by ptrobajo on 2008-06-18 10:24:24 as ** along with 1 person chrisamiller
  • Module map of stem cell genes guides creation of epithelial cancer stem cells.
    Cell stem cell, Vol. 2, No. 4. (10 April 2008), pp. 333-344.
    by DJ Wong, H Liu, TW Ridky, D Cassarino, E Segal, HY Chang
    posted to stem module map cell cancer by ptrobajo on 2008-06-18 10:18:41 as **
  • A modular approach for integrative analysis of large-scale gene-expression and drug-response data
    Nature Biotechnology, Vol. 26, No. 5. (08 May 2008), pp. 531-539.
    by Zoltán Kutalik, Jacques S Beckmann, Sven Bergmann
    posted to module interaction gene expression drug by ptrobajo on 2008-06-18 12:53:05 as ** along with 3 people oelemento stringertheory tmmurali
  • Beyond Modularity: A Developmental Perspective on Cognitive Science
    (25 September 1995)
    by Annette Karmiloff-Smith
    posted to book development module pagetian representational-redescription schema by paulclinger on 2007-03-18 03:53:01 as read along with 2 people and 1 group crispinb heintz folk_epistemology
  • DAVID Gene Functional Classification Tool: A novel biological module-centric algorithm to functionally analyze large gene list
    Genome Biology, Vol. 8 (04 September 2007), R183.
    by Da W Huang, Brad T Sherman, Qina Tan, Jack R Collins, Gregory W Alvord, Jean Roayaei, Robert Stephens, Michael W Baseler, Clifford H Lane, Richard A Lempicki
    posted to bioinformatics module tool by mellabee on 2007-10-05 11:18:53 as *** along with 6 people heliopais jyuh aalibes dragonrez jfr rdiaz
  • Subpixel motion computing architecture
    IEE Proceedings Vision, Image and Signal Processing, Vol. 153, No. 6. (December 2006), pp. 869-880.
    by J Diaz, E Ros, S Mota, F Pelayo, EM Ortigosa
    posted to analysis architecture arrays board circuitry computing co-processing device field fpga frame fully gate grabber image module motion optical-flow output pci pipelined processing programmable sensor sensors sequences stand-alone storage subpixel system virtual working by masaakif on 2008-02-20 06:59:50 as **
  • GraphWeb: mining heterogeneous biological networks for gene modules with functional significance.
    Nucleic acids research (6 May 2008)
    by Jüri Reimand, Laur Tooming, Hedi Peterson, Priit Adler, Jaak Vilo
    posted to network module functional by maralena on 2008-05-09 07:52:09 as ** along with 4 people ptrobajo jyuh shigepong pinney
  • Prediction of regulatory modules comprising microRNAs and target genes.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by S Yoon, G De Micheli
    posted to microrna module regulation target by maralena on 2008-03-06 08:50:23 as ** along with 3 people and 1 group eckart_bindewald mortenlindow noano microRNA
  • CFinder: Locating cliques and overlapping modules in biological networks
    eprint arXiv:q-bio/0602004 (February 2006)
    by B Adamcsek, G Palla, IJ Farkas, I Derenyi, T Vicsek
    posted to clique module network by maralena on 2008-02-10 12:00:26 as ** along with 1 person Scis0000002
  • Detecting functional modules in the yeast proteinprotein interaction network
    Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2283-2290.
    by Chen, Jingchun, Yuan, Bo
    posted to functional module network ppi yeast by maralena on 2008-02-12 09:18:52 as ** along with 3 people ellakat tmmurali jfr
  • On the criteria to be used in decomposing systems into modules
    Commun. ACM, Vol. 15, No. 12. (December 1972), pp. 1053-1058.
    by DL Parnas
    posted to module by linekin on 2006-11-09 08:58:51 as read along with 19 people and 3 groups pridkett hamish kistijantoro lgaio grosskur mbravenboer ddahlem pverstra emerson schuh KarlKlose rsantana VRadenovic kklo RalfMitschke saintedlama buchgeher rdyer alphabetagamma macc DSTO-CAS Laboratory for Software Design
  • KERIS: evolving software with extensible modules: Research Articles
    J. Softw. Maint. Evol., Vol. 17, No. 5. (September 2005), pp. 333-362.
    by Matthias Zenger
    posted to extensible interface module by KarlKlose on 2007-05-15 11:25:05 as ***
  • Modular multiple dispatch with multiple inheritance
    (2007), pp. 1117-1121.
    by Eric Allen, JJ Hallett, Victor Luchangco, Sukyoung Ryu, Guy L Steele
    posted to type system module by KarlKlose on 2008-05-05 12:45:50 as **
  • A modular module system
    Journal of Functional Programming, Vol. 10, No. 3. (2000), pp. 269-303.
    by Xavier Leroy
    posted to system module modular by KarlKlose on 2008-06-09 14:34:51 as ** along with 5 people twleung JeffreyPalmer zednenem huitseeker Ema
  • Modular analysis of signal transduction networks
    Control Systems Magazine, IEEE, Vol. 24, No. 4. (2004), pp. 35-52.
    by Julio Saez-Rodriguez, Andreas Kremling, Holger Conzelmann, Katja Bettenbrock, Ernst D Gilles
    posted to module network signal_transduction by karfunkel on 2007-08-22 13:45:21 as ****
  • Revealing modular organization in the yeast transcriptional network.
    Nat Genet, Vol. 31, No. 4. (August 2002), pp. 370-377.
    by J Ihmels, G Friedlander, S Bergmann, O Sarig, Y Ziv, N Barkai
    posted to module network by karfunkel on 2007-08-17 13:57:24 as ** along with 4 people and 2 groups ellakat adepace nickluscombe natstreet EisenLab EBI-regulation
  • Functional modules by relating protein interaction networks and gene expression
    pp. 6283-6289.
    by Sabine Tornow
    posted to module network by karfunkel on 2007-09-14 13:22:27 as **
  • Analyzing yeast protein-protein interaction data obtained from different sources
    Nat Biotech, Vol. 20, No. 10. (October 2002), pp. 991-997.
    by Gary D Bader, Christopher W Hogue
    posted to module network by karfunkel on 2007-09-14 13:17:51 as ** along with 7 people and 1 group dragonrez lfriedl chad_davis balajis wnpx dgront iris_2001 kdl
  • Protein complexes and functional modules in molecular networks.
    Proc Natl Acad Sci U S A, Vol. 100, No. 21. (14 October 2003), pp. 12123-12128.
    by V Spirin, LA Mirny
    posted to module network by karfunkel on 2007-09-14 13:16:36 as ** along with 11 people and 4 groups ellakat carlk biehl grahamc camster kentsis ujh tmmurali dragonrez joseph_x_zhou Evangelia dbk-lab biophysics HIV_DR bioNetwork_sysBio
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